Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B17
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    28   0.10 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    28   0.10 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.9  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   6.7  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 662 LLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLR 543
           LLV    F R Q+    + T VH IWN        D R+R
Sbjct: 331 LLVMVAMFSRTQQSANKTATFVHEIWNKYALKNEVDKRVR 370


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 662 LLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLR 543
           LLV    F R Q+    + T VH IWN        D R+R
Sbjct: 287 LLVMVAMFSRTQQSANKTATFVHEIWNKYALKNEVDKRVR 326


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 335 DDVKYESTIGPMTSTALLDNKMDVTDENVL 246
           DDV+   T GP++        +D +D + +
Sbjct: 87  DDVRSPGTPGPLSQAPASQQSLDASDPDAM 116


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 335 DDVKYESTIGPMTSTALLDNKMDVTDENVL 246
           DDV+   T GP++        +D +D + +
Sbjct: 243 DDVRSPGTPGPLSQAPASQQSLDASDPDAM 272


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = -2

Query: 728 RRYLXAVEERXPTPGVRHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDAR 549
           +R +  V ER  T  +    A L    P     +  ++ +  +  R  + +   LSN+  
Sbjct: 97  QRVMANVRERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTLKLAARYIDFLYHVLSNENA 156

Query: 548 LRCDLV 531
           L  DL+
Sbjct: 157 LDVDLI 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,460
Number of Sequences: 336
Number of extensions: 3197
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)