Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B17
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 68 8e-12
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076) 31 1.1
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051) 30 2.6
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.4
SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2) 29 4.5
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9) 28 7.9
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 68.1 bits (159), Expect = 8e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = -2
Query: 779 ECLVEFVPRGREARGTWRRYLXAVEERXPTPGVRHGLARLLVDTPPFERAQRHRLDSETV 600
ECL ++ E +L + E+ P P +RH R+L D PPF R L ++ +
Sbjct: 705 ECLADYTKV--EVSEKTLNFLMEIVEKDPVPYIRHHTLRVLSDNPPFTRKSDSPLCTQVL 762
Query: 599 VHRIWNNINSNLSNDARLRCDLVDLYYTLYGAKRPICCP 483
V R+W+ + + +D RLRCD VDLY L+G P C P
Sbjct: 763 VERLWHFMCT--VHDWRLRCDAVDLYSALFGRLTPSCVP 799
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -2
Query: 362 LKPVIKQEIDDVKYESTIGPMT-STALLDNKMDVTDENVLPVP-LSSIKEEDVKIDVTTV 189
L P+ ++ +D + S+ T S+A + M +E+V P LSSI E+ + +V
Sbjct: 916 LSPIFERSEEDYRSSSSSASSTGSSAASSHHMMSRNESVAPQGHLSSIAEQHNHVSERSV 975
Query: 188 STEIPLRVFND 156
ST PL ND
Sbjct: 976 STNEPLVPMND 986
>SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076)
Length = 403
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -2
Query: 326 KYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDSK 147
K ST GP S A D D N+LP + I ED+++D+ + P + +
Sbjct: 120 KVTSTTGPTASQAQPDVHQDC---NLLPQVVQRISSEDIEVDIELIYIRYPPKCRTPNRC 176
Query: 146 REFSSDN 126
FS N
Sbjct: 177 MAFSMVN 183
>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
Length = 717
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -2
Query: 224 KEEDVKIDVTTVSTEIPLRVFNDDSKREFSSDNAVALPGIPGTSGPIGFE 75
K+++ ++D++T S E+ V+ + R FSS +A L G+P + I E
Sbjct: 522 KDQEGQLDLSTTSLELIWDVYTLVTSRFFSSKDASGLLGLPASLPEIDSE 571
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 94 EVPGIPGRATALSELNSRFESSLKTLKGISVETVVTSIFTSSSLI 228
E+ G G L ELNSR + ++K+LKG E S+ T L+
Sbjct: 33 EIRGCDGPLKVLDELNSRAKRTIKSLKGKIQEKGSHSLNTGHILL 77
>SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 616 RRCLCARSKGGVSTSRRARP----CRTPGVGXRSSTAXKXRRQVPRASRPRGTNSTRHSX 783
RRC+ A K + R+ P CR G+G RS T + R R + RG ++R +
Sbjct: 21 RRCMDAYCKVHLKRLRKGIPLPVPCRICGIGTRSET--RLRAHAERIVKGRGCVASRGAL 78
Query: 784 GRQS 795
G S
Sbjct: 79 GNGS 82
>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
Length = 610
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 615 EAVPLRALEGRRVDEQARQAVPHARGRGSLLHGRQVXTPGSSGFPSTRXELXQALEXPPV 794
E P+R + R E+ ++AV G+ HGR + G + P R + + + PPV
Sbjct: 441 ETKPIRVMPRRTRKEELQEAVRRGTGQYQTSHGRAMSLEGRNPAP-RRVKRSRVPKPPPV 499
>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
Length = 499
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -2
Query: 305 PMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDS 150
P+++T D ++ + + + VP + + E D+TT+ T++ + V D+S
Sbjct: 35 PLSATKARDARVTLAQKLLYAVPATPV--ESTASDITTLLTQLEIHVAEDES 84
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 149 KREFSSDNAVALPGIPGTSGPIGFEPGMFRPLKDELGAP 33
++ F D A+PG PG G +GF PG P + E G P
Sbjct: 569 QKGFKGDPGDAIPGNPGDPGVMGF-PG--EPQRGEPGDP 604
>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 31 LGAPSSSFRGLNIPGSKPMGPEVPGIPGRATALSELNSRFESSLKTLKGISVETVVTSIF 210
LG P S R +P + PEVPGI + A + F +T+ +S SI
Sbjct: 466 LGLPHSHGRPTVVPWPSGLPPEVPGIVAHSNAADQYVRDFND--ETVYTLSTSDDPRSIK 523
Query: 211 TSSSL 225
S SL
Sbjct: 524 RSQSL 528
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 293 TALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRV-FNDDSKREFSS 132
TAL+ +D + +LP L S KE+ + I T +S ++ + + F+ D K+E S
Sbjct: 552 TALVTKLLDAP-QGLLPRRLLSSKEQPLVISYTALSLQLSVHLYFSSDIKKERDS 605
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,488,928
Number of Sequences: 59808
Number of extensions: 446799
Number of successful extensions: 1450
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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