Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B17
         (819 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote...    34   0.13 
At1g69070.1 68414.m07903 expressed protein                             29   3.7  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   4.9  
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr...    28   6.5  
At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    28   6.5  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    28   6.5  
At4g01260.1 68417.m00166 hypothetical protein low similarity to ...    28   8.6  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    28   8.6  
At3g27320.1 68416.m03414 expressed protein low similarity to PrM...    28   8.6  

>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 753

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +1

Query: 46  SSFRGLNIPGSKPMGPEVPGIPGRATALSELNSRFESSL 162
           S+ + L++ G+K +GPEVP +P + T +S  N+ F S +
Sbjct: 179 SNLQELDLGGNK-LGPEVPSLPSKLTTVSLKNNSFRSKI 216


>At1g69070.1 68414.m07903 expressed protein
          Length = 901

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 498 PYLLSATRNTSDDKAEPSKRTRTP 427
           PYLLS    + + +A PS+RT+TP
Sbjct: 253 PYLLSLNDMSMEIRARPSERTKTP 276


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 632 AQRHRLDSETVVHRIWNNINSNLSNDARLRCD 537
           +Q+H L++ +++ R   N+NSNLS +A    D
Sbjct: 71  SQKHTLNAASILRRHEQNLNSNLSLNASFSSD 102


>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
           protein similar to the myc family of helix-loop-helix
           transcription factors; contains Pfam profile PF00010:
           Helix-loop-helix DNA-binding domain; PMID: 12679534
          Length = 423

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -2

Query: 350 IKQEIDDVKYESTIGPMTSTALLDNKMDVT-----DENVLPVPLSSIKEEDVKIDVTTVS 186
           +K +IDD++ E     MT T  LDN    T     +  V   P  S +  D+++ V  V 
Sbjct: 294 LKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVG 353

Query: 185 TEIPLRV 165
            E  +RV
Sbjct: 354 EEAIIRV 360


>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 680 RHGLARLLV-DTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTL 513
           R GL R++V    P+  A+R+    + ++HR++ N+  ++  DA+L+  +VD Y  L
Sbjct: 293 RVGLWRIIVVHNVPYTDARRNGKVPKLLLHRLFPNVRYSIWVDAKLQL-VVDPYQIL 348


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 680 RHGLARLLV-DTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTL 513
           R GL R++V    P+  A+R+    + ++HR++ N+  ++  DA+L+  +VD Y  L
Sbjct: 293 RVGLWRIIVVHNVPYTDARRNGKVPKLLLHRLFPNVRYSIWVDAKLQL-VVDPYQIL 348


>At4g01260.1 68417.m00166 hypothetical protein low similarity to
           storekeeper protein [Solanum tuberosum] GI:14268476;
           contains Pfam profile PF04504: Protein of unknown
           function, DUF573
          Length = 325

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -2

Query: 359 KPVIKQEIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTE 180
           KPV+  +    K  +T  P +STA      + TDE       +S+ EEDVK    T+   
Sbjct: 49  KPVVVSKPSGSK--TTTKPESSTAA-KRSFEKTDEMSKKKSKNSMGEEDVKKKDETLKKN 105

Query: 179 IPLRVFNDDSK 147
           + +R+F ++ +
Sbjct: 106 LFVRLFTEEDE 116


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 85  MGPEVPGIPGRATALSELNSRFESSLKTLKGISVETVVTSIFTSSSLILD 234
           +G   PGI  +  A  +   RF+ S+K LK IS  ++   +  S+  ILD
Sbjct: 725 VGHPSPGIK-QLNAYVDPEERFQKSMKKLKSISFISICGGVALSNKDILD 773


>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 460

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 149 KREFSSDNAVALPGIPGTSGPIGFEP 72
           + EFS D+  A P +PG S P+ F P
Sbjct: 357 EEEFSLDHQAANPLVPGRSPPLKFMP 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,396
Number of Sequences: 28952
Number of extensions: 291139
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)