Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A19
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80216-3|CAB02280.1| 373|Caenorhabditis elegans Hypothetical pr... 194 5e-50
AL032648-5|CAA21698.1| 343|Caenorhabditis elegans Hypothetical ... 84 1e-16
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 34 0.13
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 32 0.53
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 31 0.93
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 31 0.93
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 31 0.93
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 31 0.93
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 30 1.6
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 29 3.8
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 5.0
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 5.0
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 5.0
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 5.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.0
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 29 5.0
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 28 8.7
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 28 8.7
Z11126-1|CAA77470.1| 292|Caenorhabditis elegans Hypothetical pr... 28 8.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.7
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.7
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.7
>Z80216-3|CAB02280.1| 373|Caenorhabditis elegans Hypothetical
protein F10G8.3 protein.
Length = 373
Score = 194 bits (474), Expect = 5e-50
Identities = 87/147 (59%), Positives = 107/147 (72%)
Frame = -1
Query: 620 FKDKKSKQPTGFALGSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIAF 441
FKDK ++ P GFALGS+EGRVA+QYV+ NPKDNFTFKCHR+ V G+Q+IYAVNDI F
Sbjct: 227 FKDKSNQNPAGFALGSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICF 286
Query: 440 HPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKG 261
HP HGTL T+GSDG +S WDKDARTKLK++E LT C + SG YA+GYDWS+G
Sbjct: 287 HPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHPMPLTCCDVHSSGAFLVYALGYDWSRG 346
Query: 260 HEHYNPNKKTFIYLRASYEELKARPTQ 180
HE N + I + E++K RPT+
Sbjct: 347 HEG-NTQPGSKIVIHKCIEDMKPRPTK 372
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/71 (45%), Positives = 36/71 (50%)
Frame = -3
Query: 777 LTXRAYXAXVEYPMAVVGTAXXGIXMXTLEGKPAEFKRIESPXKHQHRCVSIFQGQEEQA 598
L R Y A V YPMAVV A I + LE P E K IES K Q RC+SIF+ + Q
Sbjct: 175 LPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQN 234
Query: 597 ADGLRAGQRGG 565
G G G
Sbjct: 235 PAGFALGSIEG 245
>AL032648-5|CAA21698.1| 343|Caenorhabditis elegans Hypothetical
protein Y54G9A.6 protein.
Length = 343
Score = 83.8 bits (198), Expect = 1e-16
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Frame = -1
Query: 596 PTG--FALGSVEGRVAIQYVNPTNP---KDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPV 432
PTG F + S+EGRVA++YV+ + K + FKCHR G + I+ V+ +AFHP
Sbjct: 204 PTGEAFVVSSIEGRVAVEYVDQSGEEMMKRKYAFKCHREKDT-DGTELIHPVHTVAFHPK 262
Query: 431 HGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSK 264
+GT AT G+DG + WD R ++ + S++ +FN G A A Y + K
Sbjct: 263 YGTFATGGADGIVNIWDPFNRKRIIQLHKFETSISSLSFNEDGSQLAIATSYQYEK 318
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -3
Query: 663 IESPXKHQHRCVSIFQGQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQVPPDHGS- 487
+E + Q + + + GQ++Q + ++ Q+ +G V++P P GQ + +PP G+
Sbjct: 675 LEQQQQQQQQQMQAYYGQQQQQQERMQMMQQQQQQGQMVQQPGYP-GQGYPGMPPPQGAF 733
Query: 486 -GGRLPG 469
G LPG
Sbjct: 734 PPGYLPG 740
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 567 GPRGHPVREPDQPQGQLHVQVPPDHGSG 484
GP G P P Q H+Q PP HG G
Sbjct: 67 GPHGMPFMGGPPPHHQYHLQYPPPHGLG 94
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 594 DGLRAGQRGGPR---GHPVREPDQPQGQLHVQVPPDHGSGGRLPGHL 463
+G G GGP GHP +P+ Q H +PP G G P H+
Sbjct: 457 NGAPGGPPGGPPQFPGHPGMDPNYHYYQQHGMMPPHPGHPGYPPQHM 503
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVG 279
V+ +AFHP LAT D ++ +D + +L E +S+ AF+ G + A G
Sbjct: 299 VSKVAFHPNGHHLATACFDSTWRMYDLTTKKELLYQEGHSKSVADVAFHPDGSV-ALTGG 357
Query: 278 YD 273
+D
Sbjct: 358 HD 359
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 428 GTLATVGSDGSFSFW--DKDARTKLKSTELLDQSLTKCAF 315
GTL T GSDG+ FW + D+ K + +L SL K F
Sbjct: 404 GTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIF 443
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 428 GTLATVGSDGSFSFW--DKDARTKLKSTELLDQSLTKCAF 315
GTL T GSDG+ FW + D+ K + +L SL K F
Sbjct: 404 GTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIF 443
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 428 GTLATVGSDGSFSFW--DKDARTKLKSTELLDQSLTKCAF 315
GTL T GSDG+ FW + D+ K + +L SL K F
Sbjct: 404 GTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIF 443
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHS 306
V +AFHP L +V D + W+ A+ +K+ E + ++ AF+ +
Sbjct: 335 VRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAFHQT 385
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHS 306
V +AFHP L +V D + W+ A+ +K+ E + ++ AF+ +
Sbjct: 335 VRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAFHQT 385
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -1
Query: 446 AFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYD 273
+F+P +A+ G D + WD +K +T ++NH G A + YD
Sbjct: 304 SFNPQSSLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATS-SYD 360
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNH 309
V + FH + T G+ W+ D +T +K+ E+ ++S F H
Sbjct: 110 VKSVDFHSEKPWILTALHTGNVQIWNYDTKTLVKAMEVSEKSTRAAKFIH 159
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 591 GLRAGQRGGPRGHPVREPDQPQGQLHVQVPP 499
G Q+GGPRG P + QG + +Q PP
Sbjct: 485 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP 515
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 591 GLRAGQRGGPRGHPVREPDQPQGQLHVQVPP 499
G Q+GGPRG P + QG + +Q PP
Sbjct: 425 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP 455
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 591 GLRAGQRGGPRGHPVREPDQPQGQLHVQVPP 499
G Q+GGPRG P + QG + +Q PP
Sbjct: 422 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP 452
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 591 GLRAGQRGGPRGHPVREPDQPQGQLHVQVPP 499
G Q+GGPRG P + QG + +Q PP
Sbjct: 485 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP 515
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 612 QEEQAADGLRAGQRGGPRGHPVREPDQ 532
+ ++ +G R G RGGPRG P + ++
Sbjct: 370 ESSESREGPRGGPRGGPRGGPRKSSEE 396
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 615 GQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLP 472
GQ++Q +G R ++ P G P P P+G PP GSG P
Sbjct: 216 GQQQQTQNGFRGKRQAPPAGSP-PPPPPPKGS-----PPLAGSGSPPP 257
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 612 QEEQAADGLRAGQRGGPRGHPVREPDQ 532
+ ++ +G R G RGGPRG P + ++
Sbjct: 391 ESSESREGPRGGPRGGPRGGPRKSSEE 417
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 615 GQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLP 472
GQ++Q +G R ++ P G P P P+G PP GSG P
Sbjct: 237 GQQQQTQNGFRGKRQAPPAGSP-PPPPPPKGS-----PPLAGSGSPPP 278
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 612 QEEQAADGLRAGQRGGPRGHPVREPDQ 532
+ ++ +G R G RGGPRG P + ++
Sbjct: 376 ESSESREGPRGGPRGGPRGGPRKSSEE 402
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 615 GQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLP 472
GQ++Q +G R ++ P G P P P+G PP GSG P
Sbjct: 222 GQQQQTQNGFRGKRQAPPAGSP-PPPPPPKGS-----PPLAGSGSPPP 263
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 461 AVNDIAFHPVH-GTLATVGSDGSFSFWDKDARTK 363
+V D+A+ P G LA+ +DGS WD + K
Sbjct: 277 SVEDLAWSPTETGLLASCSADGSIKLWDTRSAPK 310
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 467 IYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQ--SLTKCAFNHSGQIF 294
I V I HP T SDGS W A+ + + + Q ++K AF+ +G F
Sbjct: 2668 IPGVRRIDSHPHAPFYVTGSSDGSIKVWKWGAKDTVYTARVAGQHAKVSKIAFSCNGNKF 2727
Query: 293 AYAVG 279
A G
Sbjct: 2728 AAVDG 2732
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDAR 369
++ + FHPV L T DG W+ D +
Sbjct: 361 SIRAMQFHPVEPVLFTASEDGLIKLWNLDQK 391
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 596 PTGFAL--GSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGT 423
PTG L G ++G + V +N ++ T + G+ D A+ +A+H +
Sbjct: 423 PTGDHLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLTETLTGHTD--AIWSVAYHSSNSR 480
Query: 422 LATVGSDGSFSFWD 381
L + SD + W+
Sbjct: 481 LVSASSDSTVRLWE 494
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDAR 369
++ + FHPV L T DG W+ D +
Sbjct: 361 SIRAMQFHPVEPVLFTASEDGLIKLWNLDQK 391
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 596 PTGFAL--GSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGT 423
PTG L G ++G + V +N ++ T + G+ D A+ +A+H +
Sbjct: 423 PTGDHLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLTETLTGHTD--AIWSVAYHSSNSR 480
Query: 422 LATVGSDGSFSFWD 381
L + SD + W+
Sbjct: 481 LVSASSDSTVRLWE 494
>Z11126-1|CAA77470.1| 292|Caenorhabditis elegans Hypothetical
protein ZK643.1 protein.
Length = 292
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 78 NQSLTFPAQYIARCLWAAG--GARRRPGVEESIVGLLCRTRFEFFVRCSQVNERLLI-GV 248
N SLT A I + A R R G++E + L+ +T+FE R VNE+ L +
Sbjct: 171 NMSLTRTAFRIGESIEAVVTINNRTRKGLKEVALQLIMKTQFEARSRYEHVNEKKLAEQL 230
Query: 249 VVLVTLRPVIPDC 287
+ +V L V C
Sbjct: 231 IEMVPLGAVKSRC 243
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 579 GQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLPGH 466
G G PRG P P G + PP HG G PGH
Sbjct: 159 GGGGDPRGPP-GGMGGPPGHGGMGGPPGHGGQGGPPGH 195
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 579 GQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLPGH 466
G G PRG P P G + PP HG G PGH
Sbjct: 439 GGGGDPRGPP-GGMGGPPGHGGMGGPPGHGGQGGPPGH 475
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = -3
Query: 687 GKPAEFKRIESPXKHQHRCVSIFQGQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQ 508
G P + R Q+ Q Q++ A ++ GP G P PQGQ +
Sbjct: 632 GPPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYG 691
Query: 507 VPPDHGSGGRLPG 469
PP G PG
Sbjct: 692 GPPPPGQPYGPPG 704
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = -3
Query: 687 GKPAEFKRIESPXKHQHRCVSIFQGQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQ 508
G P + R Q+ Q Q++ A ++ GP G P PQGQ +
Sbjct: 632 GPPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYG 691
Query: 507 VPPDHGSGGRLPG 469
PP G PG
Sbjct: 692 GPPPPGQPYGPPG 704
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,408
Number of Sequences: 27780
Number of extensions: 255520
Number of successful extensions: 865
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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