Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A12
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      122   2e-28
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   119   2e-27
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   118   5e-27
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    28   6.2  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  122 bits (295), Expect = 2e-28
 Identities = 58/110 (52%), Positives = 76/110 (69%)
 Frame = -3

Query: 577 KVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 398
           KVG+SEA LL  L I PFSYGLVV+ VYD+G++F PE+L++  +DL  KF AGV+ + AL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITAL 228

Query: 397 SLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 248
           SLAI YPT+A+APH   N +KN+L               +KEF+KDP+KF
Sbjct: 229 SLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = -2

Query: 758 KSQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 579
           K  APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GD
Sbjct: 109 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 578 Q 576
           +
Sbjct: 169 K 169


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  119 bits (287), Expect = 2e-27
 Identities = 55/110 (50%), Positives = 75/110 (68%)
 Frame = -3

Query: 577 KVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 398
           KVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227

Query: 397 SLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 248
           +LA+ YPT+A+APH   N +KN L               +KEF+KDPSKF
Sbjct: 228 ALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = -2

Query: 758 KSQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 579
           K  APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167

Query: 578 Q 576
           +
Sbjct: 168 K 168


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  118 bits (284), Expect = 5e-27
 Identities = 54/110 (49%), Positives = 75/110 (68%)
 Frame = -3

Query: 577 KVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 398
           KVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227

Query: 397 SLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 248
           +LA+ YPT+A+APH   N +KN L               +KE++KDPSKF
Sbjct: 228 ALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = -2

Query: 758 KSQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 579
           K  APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167

Query: 578 Q 576
           +
Sbjct: 168 K 168


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 677 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDQ 576
           E     + L +P +++KGT+E++ D  + + G Q
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQ 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,370,004
Number of Sequences: 28952
Number of extensions: 310892
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)