Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
31	O_BomaASG10028_complete:A_BomaASG_c28074_g1_i1 107bp
32	O_BomaASG10029_complete:A_BomaASG_c28075_g1_i1 300bp		mediator_of_RNA_polymerase_II_transcription_subunit_27_[Bombyx_mori]	GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated
33	O_BomaASG1002_complete:A_BomaASG_c6794_g1_i1 136bp		peptidyl-prolyl_cis-trans_isomerase_isoform_X1_[Bombyx_mori]	GO:0000413 P protein peptidyl-prolyl isomerization GO:0003677 F DNA binding GO:0003755 F peptidyl-prolyl cis-trans isomerase activity GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0005819 C spindle GO:0005856 C cytoskeleton GO:0008152 P metabolic process GO:0016853 F isomerase activity
34	O_BomaASG10030_5prime_partial:A_BomaASG_c28075_g1_i2 166bp		mediator_of_RNA_polymerase_II_transcription_subunit_27_[Bombyx_mori]	GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated
35	O_BomaASG10031_5prime_partial:A_BomaASG_c28078_g1_i1 246bp		nucleolar_MIF4G_domain-containing_protein_1_homolog_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0008150 P biological_process GO:0022008 P neurogenesis GO:0042274 P ribosomal small subunit biogenesis GO:0044822 F RNA binding
36	O_BomaASG10032_5prime_partial:A_BomaASG_c28078_g1_i1 123bp
37	O_BomaASG10033_5prime_partial:A_BomaASG_c28079_g2_i1 266bp		CMP-sialic_acid_transporter_1_[Helicoverpa_armigera]	GO:0000139 C Golgi membrane GO:0005351 F carbohydrate:proton symporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015992 P proton transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane
38	O_BomaASG10034_complete:A_BomaASG_c28081_g1_i1 102bp		presenilin_enhancer_[Bombyx_mori]	GO:0005770 C late endosome GO:0005886 C plasma membrane GO:0007219 P Notch signaling pathway GO:0007220 P Notch receptor processing GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055037 C recycling endosome GO:0070765 C gamma-secretase complex
39	O_BomaASG10035_internal:A_BomaASG_c28083_g1_i1 152bp		probable_Rho_GTPase-activating_protein_CG5521_isoform_X2_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0043547 P positive regulation of GTPase activity GO:0051056 P regulation of small GTPase mediated signal transduction
40	O_BomaASG10036_internal:A_BomaASG_c28083_g1_i2 101bp		probable_Rho_GTPase-activating_protein_CG5521_isoform_X1_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0043547 P positive regulation of GTPase activity GO:0051056 P regulation of small GTPase mediated signal transduction
41	O_BomaASG10037_internal:A_BomaASG_c28085_g1_i1 244bp		probable_malonyl-CoA-acyl_carrier_protein_transacylase,_mitochondrial_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity GO:0005739 C mitochondrion GO:0006629 P lipid metabolic process GO:0006631 P fatty acid metabolic process GO:0006633 P fatty acid biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity
42	O_BomaASG10038_5prime_partial:A_BomaASG_c28085_g1_i1 171bp
43	O_BomaASG10039_5prime_partial:A_BomaASG_c28085_g1_i1 106bp
44	O_BomaASG1003_3prime_partial:A_BomaASG_c6796_g1_i1 131bp		uncharacterized_protein_LOC101746464_isoform_X1_[Bombyx_mori]	GO:0006810 P transport GO:0015031 P protein transport
45	O_BomaASG10040_3prime_partial:A_BomaASG_c28085_g1_i2 311bp		probable_malonyl-CoA-acyl_carrier_protein_transacylase,_mitochondrial_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity GO:0005739 C mitochondrion GO:0006629 P lipid metabolic process GO:0006631 P fatty acid metabolic process GO:0006633 P fatty acid biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity
46	O_BomaASG10041_5prime_partial:A_BomaASG_c28085_g1_i2 171bp
47	O_BomaASG10042_5prime_partial:A_BomaASG_c28085_g1_i2 106bp
48	O_BomaASG10043_3prime_partial:A_BomaASG_c28085_g1_i3 311bp		probable_malonyl-CoA-acyl_carrier_protein_transacylase,_mitochondrial_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity GO:0005739 C mitochondrion GO:0006629 P lipid metabolic process GO:0006631 P fatty acid metabolic process GO:0006633 P fatty acid biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity
49	O_BomaASG10044_5prime_partial:A_BomaASG_c28085_g1_i3 171bp
50	O_BomaASG10045_5prime_partial:A_BomaASG_c28085_g1_i3 106bp
51	O_BomaASG10046_internal:A_BomaASG_c28086_g1_i1 338bp		alsin_[Bombyx_mori]	GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0007283 P spermatogenesis GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030154 P cell differentiation GO:0042787 P ubiquitin-dependent protein catabolic process GO:0061630 F ubiquitin protein ligase activity
52	O_BomaASG10047_3prime_partial:A_BomaASG_c28087_g1_i1 216bp		poly(U)-specific_endoribonuclease_homolog_[Bombyx_mori]	GO:0003723 F RNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0004521 F endoribonuclease activity GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
53	O_BomaASG10048_3prime_partial:A_BomaASG_c28088_g1_i1 147bp		DNA_repair_protein_RAD51_homolog_4_isoform_X4_[Bombyx_mori]
54	O_BomaASG10049_3prime_partial:A_BomaASG_c28088_g1_i2 147bp		DNA_repair_protein_RAD51_homolog_4_isoform_X4_[Bombyx_mori]
55	O_BomaASG1004_complete:A_BomaASG_c6807_g1_i1 575bp		moesin/ezrin/radixin_homolog_1_isoform_X1_[Bombyx_mori]	GO:0003779 F actin binding GO:0005737 C cytoplasm GO:0005856 C cytoskeleton GO:0005886 C plasma membrane GO:0005912 C adherens junction GO:0008092 F cytoskeletal protein binding GO:0016020 C membrane GO:0019898 C extrinsic component of membrane GO:0030054 C cell junction GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
56	O_BomaASG10050_3prime_partial:A_BomaASG_c28088_g1_i3 219bp		DNA_repair_protein_RAD51_homolog_4_isoform_X3_[Bombyx_mori]	GO:0000150 F DNA strand exchange activity GO:0000166 F nucleotide binding GO:0000400 F four-way junction DNA binding GO:0000707 P meiotic DNA recombinase assembly GO:0000722 P telomere maintenance via recombination GO:0000723 P telomere maintenance GO:0000724 P double-strand break repair via homologous recombination GO:0000781 C chromosome, telomeric region GO:0000784 C chromosome, telomeric region GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003697 F single-stranded DNA binding GO:0004520 F endodeoxyribonuclease activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005657 C replication fork GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0005813 C centrosome GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006310 P DNA recombination GO:0006312 P mitotic recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008094 F ATP-dependent activity, acting on DNA GO:0010212 P response to ionizing radiation GO:0033063 C Rad51B-Rad51C-Rad51D-XRCC2 complex GO:0036297 P interstrand cross-link repair GO:0042148 P strand invasion GO:0043015 F gamma-tubulin binding GO:0051276 P chromosome organization GO:0051726 P regulation of cell cycle
57	O_BomaASG10051_complete:A_BomaASG_c28090_g1_i1 794bp		cullin-4A_[Bombyx_mori]	GO:0003684 F damaged DNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0016567 P protein ubiquitination GO:0031175 P neuron projection development GO:0031461 C cullin-RING ubiquitin ligase complex GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex GO:0031625 F ubiquitin protein ligase binding GO:0035518 P histone H2A monoubiquitination GO:0042787 P ubiquitin-dependent protein catabolic process GO:0045732 P positive regulation of protein catabolic process GO:0061630 F ubiquitin protein ligase activity GO:0070062 C extracellular exosome GO:0070914 P UV-damage excision repair GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
58	O_BomaASG10052_complete:A_BomaASG_c28090_g1_i1 179bp
59	O_BomaASG10053_complete:A_BomaASG_c28091_g1_i1 102bp
60	O_BomaASG10054_3prime_partial:A_BomaASG_c28092_g1_i1 190bp		wiskott-Aldrich_syndrome_protein_family_member_3_[Bombyx_mori]	GO:0003674 F molecular_function GO:0003779 F actin binding GO:0005737 C cytoplasm GO:0005856 C cytoskeleton GO:0007010 P cytoskeleton organization GO:0008360 P regulation of cell shape GO:0014003 P oligodendrocyte development GO:0030027 C lamellipodium GO:0030032 P lamellipodium assembly GO:0030036 P actin cytoskeleton organization GO:0031643 P positive regulation of myelination GO:0070062 C extracellular exosome