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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
61 O_BomoEE10055_complete:A_BomoEE_comp63859_c0_seq4
121bp
62 O_BomoEE10056_complete:A_BomoEE_comp63860_c0_seq1
319bp
 PREDICTED:_uncharacterized_protein_KIAA1841-like_[Bombyx_mori]
63 O_BomoEE10057_complete:A_BomoEE_comp63860_c0_seq2
830bp
 hypothetical_protein_KGM_15403_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
64 O_BomoEE10058_complete:A_BomoEE_comp63864_c0_seq1
251bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_8_[Papilio_polytes]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0051726 P regulation of cell cycle
65 O_BomoEE10059_complete:A_BomoEE_comp63864_c0_seq2
142bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_8_[Amyelois_transitella]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0051726 P regulation of cell cycle
66 O_BomoEE1005_complete:A_BomoEE_comp22377_c0_seq1
125bp
67 O_BomoEE10060_complete:A_BomoEE_comp63864_c0_seq2
120bp
 hypothetical_protein_KGM_04268_[Danaus_plexippus]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0051726 P regulation of cell cycle
68 O_BomoEE10061_complete:A_BomoEE_comp63869_c0_seq1
270bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog,_partial_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
69 O_BomoEE10062_complete:A_BomoEE_comp63869_c0_seq1
267bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
70 O_BomoEE10063_complete:A_BomoEE_comp63869_c0_seq2
447bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
71 O_BomoEE10064_complete:A_BomoEE_comp63869_c0_seq3
569bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
72 O_BomoEE10065_complete:A_BomoEE_comp63869_c0_seq4
267bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
73 O_BomoEE10066_complete:A_BomoEE_comp63869_c0_seq4
148bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
74 O_BomoEE10067_complete:A_BomoEE_comp63871_c1_seq1
942bp
 hypothetical_protein_KGM_19935_[Danaus_plexippus]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
75 O_BomoEE10068_complete:A_BomoEE_comp63873_c0_seq1
110bp
76 O_BomoEE10069_complete:A_BomoEE_comp63874_c0_seq1
1059bp
 CRM1_[Spodoptera_frugiperda]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0000056 P ribosomal small subunit export from nucleus
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000776 C kinetochore
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005642 C annulate lamellae
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0010824 P regulation of centrosome duplication
GO:0015030 C Cajal body
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0042176 P regulation of protein catabolic process
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
GO:0046825 P regulation of protein export from nucleus
GO:0051028 P mRNA transport
77 O_BomoEE1006_5prime_partial:A_BomoEE_comp22377_c0_seq2
262bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0001932 P regulation of protein phosphorylation
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032880 P regulation of protein localization
GO:0036514 P dopaminergic neuron axon guidance
GO:0036515 P serotonergic neuron axon guidance
GO:0042384 P cilium assembly
GO:1904938 P planar cell polarity pathway involved in axon guidance
78 O_BomoEE10070_complete:A_BomoEE_comp63874_c0_seq1
125bp
79 O_BomoEE10071_complete:A_BomoEE_comp63874_c0_seq1
107bp
80 O_BomoEE10072_complete:A_BomoEE_comp63876_c1_seq1
1821bp
 PREDICTED:_arginine-glutamic_acid_dipeptide_repeats_protein_[Papilio_xuthus]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001105 F transcription coactivator activity
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007275 P multicellular organism development
GO:0008267 F poly-glutamine tract binding
GO:0008270 F zinc ion binding
GO:0021549 P cerebellum development
GO:0021691 P cerebellar Purkinje cell layer maturation
GO:0021930 P cerebellar granule cell precursor proliferation
GO:0021942 P radial glia guided migration of Purkinje cell
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048755 P branching morphogenesis of a nerve
GO:0048813 P dendrite morphogenesis
81 O_BomoEE10073_5prime_partial:A_BomoEE_comp63884_c0_seq1
257bp
 PREDICTED:_lysM_and_putative_peptidoglycan-binding_domain-containing_protein_2_[Amyelois_transitella]
82 O_BomoEE10074_complete:A_BomoEE_comp63884_c0_seq1
100bp
83 O_BomoEE10075_5prime_partial:A_BomoEE_comp63890_c0_seq2
102bp
 Uncharacterized_protein_OBRU01_10131_[Operophtera_brumata]
84 O_BomoEE10076_complete:A_BomoEE_comp63893_c0_seq2
166bp
 PREDICTED:_apolipoprotein_D-like_[Amyelois_transitella]
GO:0000302 P response to reactive oxygen species
GO:0005215 F transporter activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0006006 P glucose metabolic process
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0007420 P brain development
GO:0007568 P aging
GO:0008289 F lipid binding
GO:0010642 P negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 P peripheral nervous system axon regeneration
GO:0015485 F cholesterol binding
GO:0022626 C cytosolic ribosome
GO:0030425 C dendrite
GO:0042246 P tissue regeneration
GO:0042308 P negative regulation of protein import into nucleus
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0048678 P response to axon injury
GO:0051895 P negative regulation of focal adhesion assembly
GO:0060588 P negative regulation of lipoprotein lipid oxidation
GO:0070062 C extracellular exosome
GO:0071638 P negative regulation of monocyte chemotactic protein-1 production
GO:1900016 P negative regulation of cytokine production involved in inflammatory response
GO:2000098 P negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 P negative regulation of T cell migration
85 O_BomoEE10077_3prime_partial:A_BomoEE_comp63893_c1_seq1
105bp
86 O_BomoEE10078_3prime_partial:A_BomoEE_comp63903_c0_seq1
395bp
 PREDICTED:_uncharacterized_protein_LOC101738114_isoform_X2_[Bombyx_mori]
87 O_BomoEE10079_5prime_partial:A_BomoEE_comp63903_c0_seq1
151bp
88 O_BomoEE1007_complete:A_BomoEE_comp22377_c0_seq2
125bp
89 O_BomoEE10080_complete:A_BomoEE_comp63910_c0_seq1
1827bp
 PREDICTED:_nuclear_pore_complex_protein_Nup214_isoform_X2_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0046826 P negative regulation of protein export from nucleus
GO:0051028 P mRNA transport
GO:0090204 P protein localization to nuclear pore
90 O_BomoEE10081_complete:A_BomoEE_comp63910_c0_seq1
199bp
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