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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1 A_BomoASG_c10001_g1_i1
470bp
 uncharacterized_protein_LOC101735977_isoform_X2_[Bombyx_mori]
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:4.48 TPM:3.43
2 A_BomoASG_c10003_g1_i1
502bp
 LOW_QUALITY_PROTEIN:_probable_E3_ubiquitin-protein_ligase_HERC2_[Helicoverpa_armigera]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:1.86 TPM:1.43
3 A_BomoASG_c10004_g1_i1
227bp
FPKM:2.32 TPM:1.78
4 A_BomoASG_c10005_g1_i1
604bp
FPKM:4.72 TPM:3.62
5 A_BomoASG_c10006_g1_i1
223bp
FPKM:1.63 TPM:1.25
6 A_BomoASG_c1000_g1_i1
234bp
FPKM:31.36 TPM:24.06
7 A_BomoASG_c10014_g1_i1
206bp
 synaptic_vesicle_glycoprotein_2B_[Bombyx_mori]
FPKM:2.06 TPM:1.58
8 A_BomoASG_c10015_g1_i1
274bp
FPKM:1.46 TPM:1.12
9 A_BomoASG_c10016_g1_i1
272bp
FPKM:0.99 TPM:0.76
10 A_BomoASG_c10018_g1_i1
276bp
FPKM:2.39 TPM:1.84
11 A_BomoASG_c10019_g1_i1
239bp
FPKM:1.35 TPM:1.03
12 A_BomoASG_c10021_g1_i1
424bp
FPKM:2.18 TPM:1.67
13 A_BomoASG_c10022_g1_i1
244bp
FPKM:1.28 TPM:0.98
14 A_BomoASG_c10023_g1_i1
404bp
FPKM:2.83 TPM:2.17
15 A_BomoASG_c10024_g1_i1
292bp
FPKM:1.27 TPM:0.98
16 A_BomoASG_c10025_g1_i1
228bp
FPKM:3.82 TPM:2.93
17 A_BomoASG_c10026_g1_i1
222bp
FPKM:0.82 TPM:0.63
18 A_BomoASG_c10027_g1_i1
220bp
FPKM:17.75 TPM:13.62
19 A_BomoASG_c10028_g1_i1
322bp
FPKM:1.75 TPM:1.34
20 A_BomoASG_c10028_g2_i1
234bp
FPKM:1.43 TPM:1.09
21 A_BomoASG_c10029_g1_i1
286bp
 CTP_synthase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003883 F CTP synthase activity
GO:0005524 F ATP binding
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0016874 F ligase activity
GO:0044210 P 'de novo' CTP biosynthetic process
FPKM:3.11 TPM:2.38
22 A_BomoASG_c10030_g1_i1
349bp
FPKM:3.02 TPM:2.32
23 A_BomoASG_c10031_g1_i1
205bp
FPKM:3.14 TPM:2.41
24 A_BomoASG_c10033_g1_i1
330bp
FPKM:3.34 TPM:2.56
25 A_BomoASG_c10034_g1_i1
228bp
FPKM:16.06 TPM:12.32
26 A_BomoASG_c10035_g1_i1
259bp
FPKM:2.21 TPM:1.70
27 A_BomoASG_c10036_g1_i1
295bp
 DNA-binding_protein_RFX2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006955 P immune response
GO:0043231 C intracellular membrane-bounded organelle
FPKM:5.41 TPM:4.15
28 A_BomoASG_c10037_g1_i1
402bp
FPKM:3.56 TPM:2.73
29 A_BomoASG_c10038_g1_i1
207bp
FPKM:5.08 TPM:3.90
30 A_BomoASG_c10039_g1_i1
2271bp
 aldo-keto_reductase_AKR2E4-like_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:247.85 TPM:190.11
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