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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
31 A_BomaMSG_c10042_g1_i1
210bp
FPKM:1.07 TPM:0.48
32 A_BomaMSG_c10042_g2_i1
246bp
FPKM:5.54 TPM:2.48
33 A_BomaMSG_c10044_g1_i1
204bp
PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Amyelois_transitella]
FPKM:2.34 TPM:1.05
34 A_BomaMSG_c10045_g1_i1
364bp
succinate_dehydrogenase_[ubiquinone]_flavoprotein_subunit,_mitochondrial_[Bombyx_mori]
GO:0000104 F succinate dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006099 P tricarboxylic acid cycle
GO:0006105 P succinate metabolic process
GO:0008177 F succinate dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0022900 P electron transport chain
GO:0022904 P respiratory electron transport chain
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.51 TPM:1.12
35 A_BomaMSG_c10047_g1_i1
261bp
putative_pol_protein_[Danaus_plexippus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:2.41 TPM:1.08
36 A_BomaMSG_c10048_g1_i1
254bp
FPKM:4.02 TPM:1.80
37 A_BomaMSG_c10049_g1_i1
393bp
FPKM:5.53 TPM:2.47
38 A_BomaMSG_c10050_g1_i1
278bp
ubiquitin_carboxyl-terminal_hydrolase_20_isoform_X2_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007411 P axon guidance
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008277 P regulation of G protein-coupled receptor signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051298 P centrosome duplication
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
FPKM:0.00 TPM:0.00
39 A_BomaMSG_c10050_g1_i2
380bp
ubiquitin_carboxyl-terminal_hydrolase_20_isoform_X1_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007411 P axon guidance
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008277 P regulation of G protein-coupled receptor signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051298 P centrosome duplication
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
FPKM:2.63 TPM:1.18
40 A_BomaMSG_c10053_g1_i1
231bp
zinc_finger_protein_260_isoform_X1_[Bombyx_mori]
FPKM:5.70 TPM:2.55
41 A_BomaMSG_c10054_g1_i1
244bp
DEAD_box_ATP-dependent_RNA_helicase_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:3.53 TPM:1.58
42 A_BomaMSG_c10055_g1_i1
245bp
PREDICTED:_uncharacterized_protein_LOC106125361_[Papilio_xuthus]
FPKM:2.10 TPM:0.94
43 A_BomaMSG_c10056_g1_i1
432bp
FPKM:2.86 TPM:1.28
44 A_BomaMSG_c10058_g1_i1
292bp
FPKM:3.78 TPM:1.69
45 A_BomaMSG_c10059_g1_i1
671bp
zinc_finger_protein_91_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.81 TPM:0.81
46 A_BomaMSG_c1005_g1_i1
349bp
alpha-protein_kinase_1_[Bombyx_mori]
FPKM:2.03 TPM:0.91
47 A_BomaMSG_c10060_g1_i1
229bp
DNA_polymerase_epsilon_catalytic_subunit_A_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:5.00 TPM:2.23
48 A_BomaMSG_c10061_g1_i1
201bp
hypothetical_protein_AMK59_1302_[Oryctes_borbonicus]
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000993 F RNA polymerase II complex binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005844 C polysome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016442 C RISC complex
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0035068 C RISC complex
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0035198 F miRNA binding
GO:0035278 P miRNA-mediated gene silencing by inhibition of translation
GO:0035280 P miRNA loading onto RISC involved in gene silencing by miRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070578 C RISC-loading complex
FPKM:2.46 TPM:1.10
49 A_BomaMSG_c10064_g1_i1
242bp
FPKM:2.89 TPM:1.29
50 A_BomaMSG_c10066_g1_i1
210bp
PiggyBac_transposable_element-derived_protein_4_[Papilio_machaon]
FPKM:0.00 TPM:0.00
51 A_BomaMSG_c10067_g1_i1
341bp
uncharacterized_protein_LOC110384740_[Bombyx_mori]
FPKM:4.57 TPM:2.04
52 A_BomaMSG_c10068_g1_i1
392bp
UPF0489_protein_C5orf22_homolog_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:4.17 TPM:1.86
53 A_BomaMSG_c1006_g1_i1
401bp
atf2_isoform_X1_[Bombyx_mori]
FPKM:4.55 TPM:2.04
54 A_BomaMSG_c10071_g1_i1
206bp
lysozyme_[Bombyx_mori]
FPKM:4.55 TPM:2.03
55 A_BomaMSG_c10074_g1_i1
334bp
PREDICTED:_metaxin-2_isoform_X2_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006626 P protein targeting to mitochondrion
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0015031 P protein transport
GO:0016020 C membrane
FPKM:2.92 TPM:1.31
56 A_BomaMSG_c10076_g1_i1
265bp
nischarin_[Bombyx_mori]
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006006 P glucose metabolic process
GO:0006915 P apoptotic process
GO:0008217 P regulation of blood pressure
GO:0016020 C membrane
GO:0016601 P Rac protein signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030336 P negative regulation of cell migration
GO:0032228 P regulation of synaptic transmission, GABAergic
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0048243 P norepinephrine secretion
GO:0055037 C recycling endosome
FPKM:5.23 TPM:2.34
57 A_BomaMSG_c10078_g1_i1
322bp
FPKM:3.90 TPM:1.74
58 A_BomaMSG_c10079_g1_i1
235bp
methionyl-tRNA_formyltransferase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004479 F methionyl-tRNA formyltransferase activity
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0071951 P conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
FPKM:2.33 TPM:1.04
59 A_BomaMSG_c10082_g1_i1
393bp
protein_unc-13_homolog_4B_isoform_X6_[Bombyx_mori]
FPKM:2.21 TPM:0.99
60 A_BomaMSG_c10085_g1_i1
426bp
DNA_polymerase_epsilon_catalytic_subunit_A_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.44 TPM:1.09
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