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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
         (507 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.41 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.71 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.94 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.94 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.94 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.94 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.94 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.94 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.94 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   1.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   1.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   1.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   1.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   1.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 358 SPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKS 396
           SP    AR YS    P+ A N+N P  PP +  L   KS
Sbjct: 82  SPQTQPARFYSTPIVPHFAYNHN-PLTPPNSEPLVSPKS 119


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.71
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +    + + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 119 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 176



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 49  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 90


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 347 ADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHT 404
           + N SS +   S  +S  ++ +  +      + N PQ  P+   +H  +ST +  G T
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGET 220



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 456 GFLSDTTGYLSMKPDTDGIDVPDLGKFGPASDST 489
           GF +     L +KP   G  +PD+ +  P  D T
Sbjct: 335 GFSTHQIQVLEIKPVLGGTALPDISEIIPTGDDT 368


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 456 GFLSDTTGYLSMKPDTDGIDVPDLGKFGPASDST 489
           GF +     L +KP   G  +PD+ +  P  D T
Sbjct: 335 GFSTHQIQVLEIKPVLGGTALPDISEIIPTGDDT 368


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 456 GFLSDTTGYLSMKPDTDGIDVPDLGKFGPASDST 489
           GF +     L +KP   G  +PD+ +  P  D T
Sbjct: 335 GFSTHQIQVLEIKPVLGGTALPDISEIIPTGDDT 368


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 456 GFLSDTTGYLSMKPDTDGIDVPDLGKFGPASDST 489
           GF +     L +KP   G  +PD+ +  P  D T
Sbjct: 335 GFSTHQIQVLEIKPVLGGTALPDISEIIPTGDDT 368


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYN 380
           T  S   + AD+ SS  + ASP +       P+STP L++  N
Sbjct: 93  THPSASCKYADSTSSTGV-ASPQDLSTNGAPPRSTPPLSTPSN 134


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 345 QLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTAS 399
           QL  + ++++  A  ++S + S SP+ + + AS     +  PY  A HH    A+
Sbjct: 22  QLFQSATTEAPAAYSSSSPSGS-SPQHSSSSASTSPAARMYPYVSAAHHHHQAAA 75


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 345 QLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTAS 399
           QL  + ++++  A  ++S + S SP+ + + AS     +  PY  A HH    A+
Sbjct: 22  QLFQSATTEAPAAYSSSSPSGS-SPQHSSSSASTSPAARMYPYVSAAHHHHQAAA 75


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 214 PSCPRDYKRTTVERLFR 230
           P+C R+  + T E+LFR
Sbjct: 883 PTCWRECDKATCEKLFR 899


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,966
Number of Sequences: 317
Number of extensions: 4609
Number of successful extensions: 31
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 25
length of query: 507
length of database: 114,650
effective HSP length: 60
effective length of query: 447
effective length of database: 95,630
effective search space: 42746610
effective search space used: 42746610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)

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