SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000026-TA|BGIBMGA000026-PA|undefined
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    32   0.18 
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    31   0.41 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    30   0.55 
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    29   0.95 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    29   1.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   2.2  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    28   2.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   2.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   3.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   5.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   6.7  
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    27   6.7  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    27   6.7  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   6.7  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   8.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   8.9  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   8.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   8.9  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   8.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   8.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   8.9  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   8.9  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 307 WQALTATAKNH---SNVKPSKDIKDRLKTIADMSYKKVANRFKVQGDDGIGPFVLESSST 363
           W  +   AK+     + KP++D + +LK    ++Y +++N  K   + G    V  +   
Sbjct: 613 WYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAYSRISNLHKSSKEKGKDSQVRVALHK 672

Query: 364 DDNTLPN----NGNYKRNNSKRKGVAFEATTDLYS-KFYGLDEEAE 404
           ++  L N    +GN +R+  KR+     +T    +   +G+D+  +
Sbjct: 673 ENTALNNIVLPSGNLQRSEEKRRAALSGSTWHSPAFNIFGVDDSED 718


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 208 ERDKLQKIYRQNNNNINLYAHKEPNRIRNKVVYKYEDEFKLLNQSTKPLRINQPNKLSRP 267
           + +K  K   Q   +  L A+  P R R ++  K++ E     +   P R+NQ  K+ +P
Sbjct: 372 DTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQE-----ERRNPARVNQALKIKKP 426

Query: 268 GSAYRNTELKTKIF 281
                 +++  K+F
Sbjct: 427 IDMEEYSKVSGKVF 440


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 306 NWQALTATAKNHSNVKPSKDIKDRLKTIADMSYKK 340
           NW+ +    + H   +   D+KDR +TI    YKK
Sbjct: 77  NWKKILLDERFHFTNRSPNDLKDRFRTILPEDYKK 111


>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 190 YNQVPPNPEQSHKTIHDYERDKLQKIYRQNNNNINLYAHKEPNRIRNKVVYKYEDEFK 247
           YN   P P   HK +      K + +  + +    ++   +PNR+R   V   E   K
Sbjct: 29  YNFPKPVPGPKHKDVLSLFEKKCRSVLDEQSERFKMFHRSQPNRVRPGAVLLVESYSK 86


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 137 KPQPTIQYKPIHHFRPARPYHHFAASNIRPSTVYPPSHISNIERPYKHRDWNQYNQV-PP 195
           KPQ     K +  F      H    SNI  S  + P H S     +  RD++  N + PP
Sbjct: 351 KPQRACSQKFLDEFY----LHDLPESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSINPP 406

Query: 196 NPEQSH 201
           +P  S+
Sbjct: 407 SPLMSN 412


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 353 IGPFVLESSSTDDNTLPNNGNYKRNN-SKRKGVAFEATTDLYSKFYGLDEEAEKKYGSS 410
           + PF   S  T++N +PN+      N +KR     E        F    E+A KK  +S
Sbjct: 786 VSPFAAVSEKTNENNIPNDTTKTNGNATKRTLEQTEDAKPFAFSFGSTTEQANKKASTS 844


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 15  LQVLAEE--TATLKTQPATDRFVKILEGLGLDFQQDSSLIEAPSFLSSLFKQDENDEGGG 72
           +Q+L  E  T  L+ +P T RF  +++G+        +  +A   L +  + + N++ G 
Sbjct: 125 IQLLKSEDYTVLLQLRPGTQRFKFLVDGIWCCSSDFPTATDAEGNLYNYLEVEANEKLGA 184

Query: 73  GLFEKIAQ 80
            + E+++Q
Sbjct: 185 SIDERLSQ 192


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 353 IGPFVLESSSTDDNTLPNNGNYKRNNSKRKGVAFEATTDLYSKFYGLDEEAEKKYGSSG 411
           IG F + SSS + N+  NN N   NNS            + SK   L   A    GSSG
Sbjct: 509 IGSF-MGSSSNNSNSSNNNSNTSNNNSNTSN-----NESMVSKLSSLSGMASSFLGSSG 561


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/110 (17%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 177 NIERPYKHRDWN--QYNQVPPNPEQSHKTIHDYERDKLQKIYRQNNNNINLYAHKEPNRI 234
           N  RP K++D +  ++N +  +   S +    +  D L+K Y  + N+    +  +    
Sbjct: 110 NTLRPNKYQDADVDEFNTIRASETASQRPPIPFSSDTLKKTYLSSENDARYPSVSDSPYC 169

Query: 235 RNKVVYKYEDEFKLLNQSTKPLRINQPNKLSRPGSAYRNTELKTKIFPNS 284
            ++    +ED+F++   +     +++      P +++ + E  +   P+S
Sbjct: 170 ESEGFSSFEDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSS 219


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 316 NHSNVKPSKDIKDRLKTIADMSYKKVANRFKVQGDDGIGPFVLESSSTDDNTLPNN 371
           +HS+   SKDIK   K+  D+ + +++   + + D            TDD ++P N
Sbjct: 35  SHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDSPYPEVRAAVPPTDDPSMPCN 90


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 138 PQPTIQYKPIHHFRPARPYHHFAASNIRPSTVYPPSHI---SNIERPYKHRDWNQYNQVP 194
           P P + +KP  H  P  P HH    ++ P    PP H     ++  P  H +  ++   P
Sbjct: 208 PPPPMHHKPGEHM-PPPPMHHEPGEHMPP----PPMHHEPGEHMPPPPMHHEPGEHMPPP 262

Query: 195 P 195
           P
Sbjct: 263 P 263


>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 247 KLLNQSTKPLRINQPNKLSRPGSAYRNTELKTKIFPNSPTKYFNKDSKDGYFHVPVEFDN 306
           ++L +  +  R+ Q    SR  +A  N  L+  +FP        + + DG   + V  DN
Sbjct: 99  RILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDN 158

Query: 307 WQALTATAK 315
             A T   K
Sbjct: 159 RDANTVDYK 167


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 339 KKVANRFKVQGDDGIGPFVLESSSTDDNTLPNNGNYKRN 377
           K + NR K +G  G  P+  E   T +  L N   Y RN
Sbjct: 29  KSLGNRRKKRGLSGWEPYFQEPELTAEEKLENETLYSRN 67


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/70 (25%), Positives = 30/70 (42%)

Query: 282 PNSPTKYFNKDSKDGYFHVPVEFDNWQALTATAKNHSNVKPSKDIKDRLKTIADMSYKKV 341
           PN  T +FNK+SK        E  +    ++  + H +   S  I+D   T  + S  + 
Sbjct: 304 PNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQN 363

Query: 342 ANRFKVQGDD 351
            N    +G+D
Sbjct: 364 FNETSDEGED 373


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 48  DSSLIEAPSFLSSLFKQDENDEGGGGL 74
           DSSL + P+F++S+ K   + + GG L
Sbjct: 231 DSSLCQPPNFVTSINKAGSSSDHGGEL 257


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 183 KHRDWNQYNQVPPNPEQSHKTIHDYE-RDKLQKIYRQNNNNINLYAHKEPNRIRNK 237
           +HRD +  +    + E+S    H  + R+  ++ YR + NN     H +  R R+K
Sbjct: 171 RHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDK 226


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 180 RPYKHRDWNQYNQVPPNPEQSHKTIHDY----ERDKLQKIYRQNNNNINLYAHKEPNRIR 235
           R  K  D+  + Q  PN +   K  HD+      + L  + +    N+N +     NR R
Sbjct: 44  RSGKREDFEPFFQDTPNTKSLSKHFHDFTMNASLETLPSVEKPRGRNMNAFEETSWNRFR 103


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 339 KKVANRFKVQGDDGIGPFVL--ESSSTDDNTLPNNGNYKRNNSKRKGVAFEATTDLYSKF 396
           KK  N+      D    + L  E    D+  +P      + + K K  AFEA  D  S  
Sbjct: 40  KKKLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVE 99

Query: 397 YGLDEEAEK 405
              +E++EK
Sbjct: 100 EEEEEDSEK 108


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 347 VQGDDGIGPFVLESSSTDDNTLPNNGNYKRNNSKRK 382
           V  +  +G +  ++ + DDN + NN N   N  KRK
Sbjct: 712 VYEERSLGIYAADTENDDDNNI-NNNNNDNNTPKRK 746


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 109 MGLEALSLITLVPVMTRAIPGVIDYF--FSKPQPTIQYKP 146
           + +E +S ITL   M  ++ GVIDYF    K Q  +QY+P
Sbjct: 285 LSVEEIS-ITLSDHMYYSLLGVIDYFRVVMKQQYYLQYRP 323


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 310 LTATAKNHSNVKPSKDIKDRLKTIADMSYKKVANRFKVQGDDGIG-PFVLESSSTDDNTL 368
           LT +A+N +    +   +    T A   ++ +AN  K Q  + I  PF  E+ ST     
Sbjct: 866 LTGSARNTAEPVENTSAEPIENTSAPTPFE-IAN--KQQATEPISAPFATETISTPAPVK 922

Query: 369 PNNGNYKRNNSKRKGVAFEATTDLYSKF 396
           P     +R+ S + GV  +AT  +  +F
Sbjct: 923 PPVPPSRRDRSAQDGVVQQATPHIQDEF 950


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 311 TATAKNHSNVKPSKDIKDRLKTIADMSYKKVANRFKVQGDDGIGPFVLESSSTDDNTLPN 370
           T TA+ H   K   DI+  ++T    S K +     V GD G+G     ++  +   + +
Sbjct: 22  TLTARTHIT-KGQIDIELTMRTTKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLIRH 80

Query: 371 NGNY 374
           N N+
Sbjct: 81  NNNF 84


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,830
Number of Sequences: 5004
Number of extensions: 107602
Number of successful extensions: 349
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 29
length of query: 431
length of database: 2,362,478
effective HSP length: 75
effective length of query: 356
effective length of database: 1,987,178
effective search space: 707435368
effective search space used: 707435368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)

- SilkBase 1999-2023 -