SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.008
SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.077
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 36   0.10 
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    34   0.23 
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.41 
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           33   0.54 
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 32   1.3  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  31   2.2  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.9  
SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.9  
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.8  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              30   3.8  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   5.1  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.1  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                30   5.1  
SB_23593| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-15)          30   5.1  
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   6.7  
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               29   6.7  
SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               29   6.7  
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               29   6.7  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.8  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.8  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.8  
SB_51315| Best HMM Match : OmpA (HMM E-Value=2.5)                      29   8.8  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.8  

>SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 122 HEVELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPS 181
           ++ E  I + N++  L +++ +  K  +  +LW    + +  T + S +D G R+P+ P+
Sbjct: 28  YQAEFTIKSANLDIFLGSNQPDTFKSQVE-ELWKAPPRGIQVTNVESLLDRGGRVPVPPN 86

Query: 182 DGEGLVVRLGSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLDWCRF 241
             EG+ + +G    ++S L+         S    CP+  K    ++ F  +   +DWC+F
Sbjct: 87  K-EGVFIAVGGEKRYTS-LE---------SDYVGCPQGLK-PDAQKFF--SQWVIDWCKF 132

Query: 242 EL 243
           +L
Sbjct: 133 QL 134


>SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 35.9 bits (79), Expect = 0.077
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 340 SSEQPQLADNNSSKSLG-ASPNNS-----IARSYSPKSTPNLASNYNRPQPPPYAGALHH 393
           SS  P   DNN+S +   A+ NN+     IA  Y+  ST  +A++YN     P+A   ++
Sbjct: 281 SSTVPIANDNNASSTASIANDNNASSTAPIANDYNASSTAPIANDYNASSTAPFANYYNN 340

Query: 394 RKSTA 398
             STA
Sbjct: 341 TSSTA 345


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 337 GTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKS 396
           G+D+S + +    ++S+S   SP  S +RS+SP  +P  + +Y+R +   ++ ++    +
Sbjct: 410 GSDASSRSRSYSRSASRSYSRSPVRSWSRSHSPSLSPQRSRSYSRSRSRSFSKSISGSPT 469

Query: 397 TASTR 401
              TR
Sbjct: 470 PKYTR 474


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 380 NRPQPPPYAGALHHRKSTASTRGHTPE 406
           NRP+PPP  G  HH++S  +T  + P+
Sbjct: 152 NRPKPPPTIGPKHHQRSAQTTTNNRPK 178



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 326 QKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNN--SIARSYSPKSTPNLASNY--NR 381
           Q+SA+     R   S   P +   +  +S     NN    + +  PK    LA N   NR
Sbjct: 166 QRSAQTTTNNRPKTS---PTIGPKHHQRSAQNITNNRPKTSPTIGPKHHQQLAQNITNNR 222

Query: 382 PQPPPYAGALHHRKSTASTRGHTPE 406
           P+  P  G  HH++S  +   + P+
Sbjct: 223 PKTSPTIGPKHHQQSAQNNTNNRPK 247


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 344  PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGAL-HHRKSTASTRG 402
            P  A +  ++S+  +P+    R Y P+  P +      P PP Y G +  HR   A TRG
Sbjct: 1851 PMHAGSIPAQSIPVAPSRG-TRQYPPRGAPMMHRGRGHP-PPQYTGGVPAHRAPPAPTRG 1908

Query: 403  HTP 405
              P
Sbjct: 1909 GPP 1911


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 347 ADNNSSKSLGASPNNSIARS----YSP-KSTPNLASNYNRPQPPPYAGALHHRKSTASTR 401
           + +  S+  GA P  SI+ S    Y+P    PNL SNY  P    YA   H   S++S  
Sbjct: 931 SSSGHSEQKGAHPPRSISYSVQGSYNPCVQGPNLPSNYRYPTHSSYASYAHENHSSSSML 990

Query: 402 GHTPELLHDP 411
              P   H P
Sbjct: 991 QEMPN--HGP 998


>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 344 PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGH 403
           P +  + S + L   P+  + RS  P        +++RP PP  +GA        S++  
Sbjct: 499 PPITSSASKRILPPLPSKDLKRSLPPLPP----KDFSRPLPPLNSGAAIKPLPPLSSKAA 554

Query: 404 TPELLHDPSRTVLEESLKLLNEANIIN 430
           T  L   PS+  L   +K +  ++ IN
Sbjct: 555 TKTLPQPPSKDDLRAGVKEMENSSEIN 581


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 328 SARAELGRR--GTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPP 385
           S+ A LG     T S     +  +N S  L +SP+    +   P S P +  N   P PP
Sbjct: 184 SSPASLGDELESTLSLRSEPIRTSNDSSKLNSSPSKGQTQ---PSSRPPIGENTYVPPPP 240

Query: 386 PYAGALH 392
           P+A   H
Sbjct: 241 PHATPTH 247


>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 134 EDLLDAHRMNRLKDI-LRTKLW---TESSQDLYATFLASAIDLGARLPLKPSDGEGLVVR 189
           E LL      RL+D+  RT L    T  S     TFL   ID    L ++ S+G  ++  
Sbjct: 510 EALLKNMSSTRLRDLNFRTPLHSAVTSGSIQTVKTFLGRTIDSNVLLEMQDSNGNTVLHH 569

Query: 190 LGSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLD 237
              ++PFS E       ++  S       D KR  ++ + R   L +D
Sbjct: 570 SVPTYPFSFENATFLLRIQESSTRKRENDDRKRNDLKTISRVERLEID 617


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 327 KSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
           +SA   L  R    S +P       +  +G        +  S KSTP     +     PP
Sbjct: 117 RSASPRLSERSATISSEPVHEGTKETSDVGDRKEKETPQEGSVKSTPADIVVHESSPKPP 176

Query: 387 YAGALHHRKSTASTRGHTPELLHDPSRTVLE 417
             G   H KS   +   +  LL +P R+ +E
Sbjct: 177 NTGIRSHNKSPLRSPKASRALL-EPGRSSIE 206


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 376 ASNYNRPQPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKL 422
           A +  R +PP Y   L  R++T+S     P  +H P   + +  L L
Sbjct: 338 AQHLQRQKPPTYTRHLLARQATSSQESFCPASIHSPGARITQVDLAL 384


>SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 325 SQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
           S K   + L ++G+D  + P + DN  + +  A    S  R ++ K +P+   +  R   
Sbjct: 22  SCKRPSSTLSKKGSDW-KPPVIRDNTDNTAAPACRQES--REFANKGSPDKTKHSTRVGV 78

Query: 385 PPY-AGA-----LHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEANIINYEIK 434
            P  +GA     L H K    T       ++  +  ++ E+L L  E N + YE+K
Sbjct: 79  VPVISGARIQEDLKHYKQQTETLESLLATVNHNNENLMNENLLLKAELNKLKYELK 134


>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 350 NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLH 409
           N+++ L  +PN + + +  P  TP+LA   N  Q  P A   +   S A     TP L  
Sbjct: 114 NTTQPLAMNPNTTPSLAMYPNKTPSLAMYPNTTQ--PLAMYPYTTSSLAMNPNTTPSLAM 171

Query: 410 DPSRTVLEESLKLLNEANIINYEIKDPIVDIADGADDYAPIDANGTGFLS---DTTGYLS 466
            P+ T    S+      ++  Y    P + +         +  N T  L+   +TT  L+
Sbjct: 172 YPN-TTPSLSMNPNTTPSLAMYPNTTPSLAMYPNTTQSLAMYPNTTPSLAMYPNTTPSLA 230

Query: 467 MKPDT 471
           M P+T
Sbjct: 231 MNPNT 235



 Score = 30.3 bits (65), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 344 PQLADN-NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
           P  A N N+++ L   PN +   +  P +TP+LA N N  QP
Sbjct: 357 PSFAMNPNTTQPLAMYPNTTQPLAMYPNTTPSLAMNPNTTQP 398



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 350 NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLH 409
           N++ SL   PN +   +  P +TP+ A N N  Q  P A   +  +  A     TP L  
Sbjct: 334 NTTPSLAMYPNTTQPLAMYPNTTPSFAMNPNTTQ--PLAMYPNTTQPLAMYPNTTPSLAM 391

Query: 410 DPSRT 414
           +P+ T
Sbjct: 392 NPNTT 396


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNY 379
           +YAA  Q   +A  G    D   +PQ A   SS+ L        +    P   P  A  Y
Sbjct: 648 YYAAYMQNGFKASPGFGWYDEYSRPQPAQQYSSQGLPPQAPQQYSWQGPP---PQAAKQY 704

Query: 380 NRPQPPPYA 388
              +PPP A
Sbjct: 705 YSQEPPPQA 713


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 367 YSPKSTPNLASNYNRPQPPPYAGALHH 393
           Y PK+T   AS+Y  P   PY G+L H
Sbjct: 849 YGPKTTEMTASSYFGPGFEPYLGSLRH 875


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 339 DSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
           ++S+   ++DNN+S +   S NN+ + + +  +     + + +PQ PP
Sbjct: 266 NTSDNNNISDNNNSDNNNTSDNNNTSDNNNSDNNNTSDNKHQQPQVPP 313


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 329 ARAELGRRGTDSSEQPQLADNNSS--KSLGASPNNSIARSYSPKSTPN-LASNYNRPQPP 385
           +R+E+    T SS    L     S  K L +  ++ + +S S  S  N +    NRP PP
Sbjct: 154 SRSEMPLPPTPSSSSESLPSGTKSPTKPLRSRSSDELVKSNSESSKSNPVPRPRNRPPPP 213

Query: 386 PYAGALHHRKSTASTRG 402
           P A      K  +S+ G
Sbjct: 214 PGASRSSASKEPSSSWG 230


>SB_23593| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-15)
          Length = 153

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 367 YSPKSTPNLASNYNRPQPPPYAGALHH 393
           Y PK+T   AS+Y  P   PY G+L H
Sbjct: 11  YGPKTTEMTASSYFGPGFEPYLGSLRH 37


>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 323 AVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASN 378
           AVS  S+R+      + +S     + +NSS S  +S ++S + S S  S+ + +S+
Sbjct: 43  AVSSSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSS 98


>SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 336 RGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
           R +  S +  + D NS   LGAS ++++A +  P S+ +  +     Q PP
Sbjct: 55  RKSAGSSRSNVFDENSDSKLGASCSDTLASNGRPSSSRHTQATSTTKQLPP 105


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 179 KPSDGEGLVVRLGSSH--PFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRD 231
           K S G  ++    SS+  P S EL++LR+E+  L +  +   +   TT+  L RD
Sbjct: 590 KESVGPKIIAEARSSNAAPGSGELEKLRKEIEKLKEEYALKTEEYNTTISELRRD 644


>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 442  DG-ADDYAPIDANGTGFLSDTTGYLSMKPDTDGI----DVPDLGKFGPASDSTP-KVHVS 495
            DG AD   PI   G G  +D T      PDT  +    +VPD GK  P  D  P +V V 
Sbjct: 938  DGVADVQTPIPDKGKGLDTDETPDEGKGPDTGNVQVEGNVPDEGKV-PNEDKVPDEVKVP 996

Query: 496  QAAKMP 501
               K+P
Sbjct: 997  DEDKVP 1002


>SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 359

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 442 DG-ADDYAPIDANGTGFLSDTTGYLSMKPDTDGI----DVPDLGKFGPASDSTP-KVHVS 495
           DG AD   PI   G G  +D T      PDT  +    +VPD GK  P  D  P +V V 
Sbjct: 189 DGVADVQTPIPDKGKGLDTDETPDEGKGPDTGNVQVEGNVPDEGKV-PNEDKVPDEVKVP 247

Query: 496 QAAKMP 501
              K+P
Sbjct: 248 DEDKVP 253


>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 406 ELLHDPSRTVLEESLKLLNEANIINYEIKDPIVDIADGADDYA 448
           E+L     T++  S ++ N     N EI D + D+ D  D YA
Sbjct: 255 EILTAQDSTLISHSTEMRNAVLSQNQEISDRLADLRDAVDTYA 297


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 191 GSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLDWCRFEL 243
           G++ PF+SE K       P    P CP D       R   DAG T D+C   +
Sbjct: 168 GTNVPFTSESK-------PTEPTPGCPLDSIAGCPNRKACDAGFTGDYCEINI 213


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 74  HSGFIFGTPPR------GTEGPLTL-EVIGLNRQDFETRRXXXXXXXXXXXXMASHEVEL 126
           H   + G PP+      GT+    L    G NR+    R             ++      
Sbjct: 60  HGHLLQGAPPKAPICGIGTQSETLLCRPCGANREGQRMRGVERRARGWFALVLSDIAARG 119

Query: 127 KIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPSDGEGL 186
            + N+  ED+ D  +   LK ++  K+WTE  +  +   ++     G    L P     L
Sbjct: 120 LVQNILDEDIPDDVKHKLLKPLVPAKVWTEEVRREFDPLMSGRRQKGPE-SLHPEKYYSL 178

Query: 187 VVRLGSSH-PFSSELKRLRE 205
            V  GS+H  F SE++ + E
Sbjct: 179 FV--GSAHLRFPSEIRDVGE 196


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQLADNNSSK--SLGASPNNSIARSYSPKSTPNLAS 377
           H+ AV  +S +A+L +  T++++  ++ +   +K  SLG SP  S     +P S P+  +
Sbjct: 818 HHPAVHGESDKADL-KINTETTDDNKMTNRVKTKEESLGTSPRRSSIGGSTPTSKPSNNN 876

Query: 378 N 378
           N
Sbjct: 877 N 877


>SB_51315| Best HMM Match : OmpA (HMM E-Value=2.5)
          Length = 342

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 125 ELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDL 161
           E ++ N+  ED+LD  +   LK ++  K+WTE    L
Sbjct: 14  EKEVQNILDEDILDDVKHKLLKPLVPAKVWTEEVDPL 50


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 341  SEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTAST 400
            SE PQ    +S +     P +  +R   P S+P   S   R  P P       R+S  S 
Sbjct: 1031 SESPQRVTKSSKERPRKRPRHQ-SRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSR 1089

Query: 401  RGHTP 405
            R  +P
Sbjct: 1090 RSPSP 1094


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,735
Number of Sequences: 59808
Number of extensions: 656180
Number of successful extensions: 2095
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2036
Number of HSP's gapped (non-prelim): 71
length of query: 507
length of database: 16,821,457
effective HSP length: 85
effective length of query: 422
effective length of database: 11,737,777
effective search space: 4953341894
effective search space used: 4953341894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)

- SilkBase 1999-2023 -