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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023844-3|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...   102   1e-22
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    59   2e-09
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    46   1e-05
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    46   1e-05
AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    29   2.0  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   4.6  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   4.6  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   4.6  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   4.6  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   4.6  
AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical ...    27   4.6  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    27   4.6  
AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical ...    27   4.6  
U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    27   6.0  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    27   6.0  
AC006776-4|AAF60628.2|  354|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AL023844-3|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score =  102 bits (245), Expect = 1e-22
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 22  EPQSHDEKVEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGM 81
           E   +    E  + IA+P+A              +S     +R G+K VQK+LR  EKG+
Sbjct: 28  EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGI 87

Query: 82  VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDL 141
              AG++SPI++  H+P +CEEK++ Y Y PSR+ +G A+G  R  I++ VK   D+K+L
Sbjct: 88  CILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKEL 147

Query: 142 YEEVKSEIKLL 152
           Y+EV   ++ L
Sbjct: 148 YDEVAEALRHL 158


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 37  AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
           A P+A              + N+K  ++ G     K L  G   ++  A D  P+EI+ H
Sbjct: 10  AFPLADTNLSQKLMDLVQQAMNYKQ-LKKGANEATKTLNRGISEIIVMAADAEPLEILLH 68

Query: 97  LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
           LP +CE+K+V Y +  S+  +G A G  R  I   + ++E    K   +++K +++ L
Sbjct: 69  LPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 61  NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 120
           N +R+G+  + + +      +V  A D++P+EI+ HLPA+C + +V Y     +  +G  
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194

Query: 121 MGTMRGCIMVLVKEHEDYK 139
           +       + LV  + + K
Sbjct: 195 VRRKTTAAVALVDVNPEDK 213


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 61  NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 120
           N +R+G+  + + +      +V  A D++P+EI+ HLPA+C + +V Y     +  +G  
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174

Query: 121 MGTMRGCIMVLVKEHEDYK 139
           +       + LV  + + K
Sbjct: 175 VRRKTTAAVALVDVNPEDK 193


>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 66  GLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRK 115
           G K+  +Q R  E G++ F G I  ++I CHL  + + +     + PS K
Sbjct: 218 GKKVRAEQNRQAENGLIHFKGLIGKMKI-CHLVRLKKRRYENASHPPSSK 266


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
           +Y Y   R      +G   G + +L+K+H+D  D  +     IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
           +Y Y   R      +G   G + +L+K+H+D  D  +     IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
           +Y Y   R      +G   G + +L+K+H+D  D  +     IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
           +Y Y   R      +G   G + +L+K+H+D  D  +     IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
           +Y Y   R      +G   G + +L+K+H+D  D  +     IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793


>AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical
           protein C09D4.4c protein.
          Length = 916

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
           M +VK HE +K   E++++E + L HP
Sbjct: 394 MPVVKAHEKHKSFREKLRNETRKLIHP 420


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
           M +VK HE +K   E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417


>AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical
           protein C09D4.4a protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
           M +VK HE +K   E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417


>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 4   VKQEPVEQEDQADVSIKAEPQSHDEK 29
           VKQEP+E E+   + +K E    DE+
Sbjct: 803 VKQEPIETEEFEKIYVKREAVEEDEE 828


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 4   VKQEPVEQEDQADVSIKAEPQSHDEK 29
           VKQEP+E E+   + +K E    DE+
Sbjct: 803 VKQEPIETEEFEKIYVKREAVEEDEE 828


>AC006776-4|AAF60628.2|  354|Caenorhabditis elegans Hypothetical
           protein Y46H3C.6 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 3   KVKQEPVEQEDQADVSIKAEPQSHDEKVE 31
           +VK+EP ++++  D    AE +  DE+VE
Sbjct: 76  EVKEEPEDEKEPEDEEEPAEDEEDDEEVE 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,046
Number of Sequences: 27539
Number of extensions: 132486
Number of successful extensions: 355
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 19
length of query: 156
length of database: 12,573,161
effective HSP length: 76
effective length of query: 80
effective length of database: 10,480,197
effective search space: 838415760
effective search space used: 838415760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)

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