GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000018-TA|BGIBMGA000018-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26730.1 68417.m03852 hypothetical protein                          28   0.68 
At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibit...    28   0.68 
At2g16030.1 68415.m01838 expressed protein                             25   8.4  

>At4g26730.1 68417.m03852 hypothetical protein
          Length = 208

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 3   FTRIIFFLFVVVFATASAKPWNFFKEIERAVAR 35
           F R+  F+F    A A   PW F +E+ER V R
Sbjct: 112 FDRVFDFVFTAHLAEALF-PWRFVEEMERTVRR 143


>At3g62180.1 68416.m06986 invertase/pectin methylesterase
          inhibitor family protein low similarity to
          pollen-specific pectin esterase from Brassica rapa
          subsp. pekinensis GI:1620652; contains Pfam profile
          PF04043: Plant invertase/pectin methylesterase
          inhibitor
          Length = 215

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 1  MNFTRIIFFLFVVVFATASAKP 22
          MN    +FFLF+ V ATA+AKP
Sbjct: 1  MNTPIKLFFLFIFVAATATAKP 22


>At2g16030.1 68415.m01838 expressed protein
          Length = 231

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 3   FTRIIFFLFVVVFATASAKPWNFFKEIERAVAR 35
           F  +  F F    A A   PW F +E+ER V R
Sbjct: 147 FDGVFDFAFTAHLAEALF-PWQFVEEMERTVRR 178


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.338    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,653
Number of Sequences: 28952
Number of extensions: 12120
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 12,070,560
effective HSP length: 39
effective length of query: 20
effective length of database: 10,941,432
effective search space: 218828640
effective search space used: 218828640
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 51 (24.6 bits)