Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QX16 Cluster: Conserved protein containing metal-depe...    36   0.98 
UniRef50_Q55G69 Cluster: Putative uncharacterized protein; n=1; ...    36   0.98 
UniRef50_Q9F530 Cluster: TraJ protein; n=4; Gammaproteobacteria|...    33   9.1  

>UniRef50_Q5QX16 Cluster: Conserved protein containing
           metal-dependent amidohydrolase family domain; n=1;
           Idiomarina loihiensis|Rep: Conserved protein containing
           metal-dependent amidohydrolase family domain -
           Idiomarina loihiensis
          Length = 526

 Score = 36.3 bits (80), Expect = 0.98
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +1

Query: 184 DQIDFLLQMLQAQXXXXXXXXXXXXXFAKEYAFDHETPDFAYSRSGRSARDLPLRDPSLE 363
           D+IDF+L ML+++             F++ Y F H   D AY        D    D  LE
Sbjct: 178 DKIDFVLNMLRSEVGIFKRLEGYYDNFSERYVFFHYMMDMAYPFDDNPKYD--FYDQQLE 235

Query: 364 ALEEMEVYLYDYLSGGGAFD 423
            +  +E +    + G  AFD
Sbjct: 236 RMTALENFSEGIVLGFSAFD 255


>UniRef50_Q55G69 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 422

 Score = 36.3 bits (80), Expect = 0.98
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 268 KEYAFDHETPD--FAYSRSGRSARDLPLRDPSLEALEEMEVYLYDYLSGGGAF 420
           +++  DH+  D  F Y    +   D+ LRD SL+A +EM+  +YDY++   +F
Sbjct: 348 QQFLKDHQLDDHIFTYRFDVQLEYDISLRDSSLQAEQEMQRSVYDYVNSNTSF 400


>UniRef50_Q9F530 Cluster: TraJ protein; n=4;
           Gammaproteobacteria|Rep: TraJ protein - Escherichia coli
          Length = 351

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 242 MKDIMNTS-PRNTLSTTRRPISLTPVQDALLATSPSEIRASKPWRKW 379
           ++D  NTS PR+   T RR + +T +Q  L     +EI  +KP   W
Sbjct: 4   IRDTSNTSQPRDNSKTARRYLDMTGIQSVLNIEHVTEISVNKPGTIW 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,935,532
Number of Sequences: 1657284
Number of extensions: 13410071
Number of successful extensions: 35888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35865
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)