Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q03BV6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_A6M105 Cluster: Signal transduction histidine kinase re...    33   9.7  
UniRef50_Q22070 Cluster: Putative uncharacterized protein plc-3;...    33   9.7  

>UniRef50_Q03BV6 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus casei ATCC 334|Rep: Putative
           uncharacterized protein - Lactobacillus casei (strain
           ATCC 334)
          Length = 382

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 347 WFIIPNHANIINVAYFQQYLFQ*TFIENSNVVFMLGSICKAI 222
           W +IP H ++ NVAY++ +L +  F   +     +G IC A+
Sbjct: 310 WLLIPRHNSLHNVAYYEAHLPELLFNRLTYAALAIGFICLAV 351


>UniRef50_A6M105 Cluster: Signal transduction histidine kinase
           regulating citrate/malate metabolism; n=1; Clostridium
           beijerinckii NCIMB 8052|Rep: Signal transduction
           histidine kinase regulating citrate/malate metabolism -
           Clostridium beijerinckii NCIMB 8052
          Length = 420

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +2

Query: 455 FNLKGCTIARNMGASKRALKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQ 619
           F++K  ++A+N    ++    VL  + + ++  E ++Y+   EIF   S NTK+Q
Sbjct: 232 FSVKALSLAQNAHEIRKNNDRVLRGINQLVQNVEKAEYMSMSEIFCIISDNTKRQ 286


>UniRef50_Q22070 Cluster: Putative uncharacterized protein plc-3;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein plc-3 - Caenorhabditis elegans
          Length = 1299

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 497 SKRALKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTEFIGNHLSRQ 667
           SK  L+DVLH++  Y   F  S+Y     I   CS   ++    EL + +G++L  Q
Sbjct: 374 SKILLRDVLHVIRHY--AFVTSEYPVILSIEDNCSVPAQRLLAQELKDILGDYLLTQ 428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,077,670
Number of Sequences: 1657284
Number of extensions: 9220163
Number of successful extensions: 20070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20066
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)