Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30009
(667 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 148 1e-34
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 88 2e-16
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 78 2e-13
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 71 2e-11
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 67 4e-10
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 67 4e-10
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 66 7e-10
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 63 5e-09
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 63 7e-09
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 62 1e-08
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 62 2e-08
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 61 3e-08
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 59 8e-08
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 59 1e-07
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 58 1e-07
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 57 4e-07
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 54 2e-06
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 54 4e-06
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 50 7e-05
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 49 1e-04
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 47 4e-04
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 44 0.003
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 44 0.004
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 38 0.22
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 36 0.66
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 36 0.88
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 33 4.7
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.7
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 33 8.2
UniRef50_Q9VHM8 Cluster: CG8136-PB, isoform B; n=3; Drosophila m... 33 8.2
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 33 8.2
UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase G... 33 8.2
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 148 bits (359), Expect = 1e-34
Identities = 70/86 (81%), Positives = 72/86 (83%)
Frame = +1
Query: 253 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXX 432
+SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR
Sbjct: 93 KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 152
Query: 433 XTGPFAFNSCPLRRIPQRYVIGTSTK 510
TGPFAFNSCPLRRIPQRYVIGTST+
Sbjct: 153 VTGPFAFNSCPLRRIPQRYVIGTSTR 178
Score = 128 bits (308), Expect = 2e-28
Identities = 64/92 (69%), Positives = 68/92 (73%)
Frame = +2
Query: 5 RPSLLPHLQVVTKKKSTKKPRNYDLGNGVMRFSXSKMFHKKAKYKFIGXXXXXXXXXXXL 184
+P+ P +TKKKSTKKPRNYDLGNGVMRFS SKMFHKKAKYKFIG L
Sbjct: 11 KPAAAP-AGALTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKL 69
Query: 185 TVVVKQIGGEKNGGTRTVPLKRRSPSTPLRRK 280
TVVVKQIGGEKNGGTRTVPLKRR P + K
Sbjct: 70 TVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEK 101
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/48 (68%), Positives = 34/48 (70%)
Frame = +3
Query: 507 QISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPS 650
+ISLGNFKLPKHFNDDYF EGDDIFATKKEKYVPS
Sbjct: 178 RISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPS 225
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 88.2 bits (209), Expect = 2e-16
Identities = 44/83 (53%), Positives = 50/83 (60%)
Frame = +1
Query: 262 YPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTG 441
YPT+ ++ FS+H R R NL GTV ILLAGRH GKR TG
Sbjct: 88 YPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTG 147
Query: 442 PFAFNSCPLRRIPQRYVIGTSTK 510
PFA NSCPLRR+ QRYVIGTS+K
Sbjct: 148 PFALNSCPLRRVSQRYVIGTSSK 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +2
Query: 44 KKSTKKPRNYDLGNGVMRFSXSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 223
KK K P N L G++R+S ++M+ ++A Y+ VK+IGG KNG
Sbjct: 15 KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74
Query: 224 GTRTVPLKRRSPSTPLR 274
G RTV LK+ S P +
Sbjct: 75 GERTVFLKKSKASYPTK 91
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 507 QISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPS 650
++ LG FK+P+H ND YF DIFA KKE++VP+
Sbjct: 170 KVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---DIFAAKKERFVPN 214
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 77.8 bits (183), Expect = 2e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 259 FYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXX 432
+YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKR
Sbjct: 115 YYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 174
Query: 433 XTGPFAFNSCPLRRIPQRYVIGTSTK 510
TGP N PLRR Q++VI TSTK
Sbjct: 175 VTGPLVLNRVPLRRTHQKFVIATSTK 200
Score = 45.6 bits (103), Expect = 0.001
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = +2
Query: 41 KKKSTKKP---RNYDLGNGVMRFSXSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVK 199
KK KP RN L G+ R+S S M+ +KA KY L V K
Sbjct: 35 KKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTK 94
Query: 200 QIGGEKNGGTRTVPLK---RRSPSTPLRRKSVLH 292
+GG+KNGGTR V L+ R P+ + RK + H
Sbjct: 95 PVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSH 128
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/68 (51%), Positives = 42/68 (61%)
Frame = +1
Query: 307 FSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQR 486
FS HVR+IR +++ GTV ILLAG H GKR TGPF +N PLRR+ Q
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQC 139
Query: 487 YVIGTSTK 510
YVI TST+
Sbjct: 140 YVIATSTR 147
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 66.9 bits (156), Expect = 4e-10
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 223 GNQNSTPQT*ES-FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXX 399
G + P ES +YPT++ +R R + ++R ++ GTV ILLAG H GKR
Sbjct: 62 GGKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVV 119
Query: 400 XXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGTST 507
TGPF N PLRRIPQ YVI TST
Sbjct: 120 FLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATST 155
Score = 47.2 bits (107), Expect = 4e-04
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +2
Query: 47 KSTKKP-RNYDLGNGVMRFSXSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 223
KS P RN +L G+ R+S S ++ K+A YK T K IGG+KNG
Sbjct: 4 KSKDHPSRNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNG 62
Query: 224 GTRTVPLKRRS---PSTPLRRK 280
G R VP++R S P+ +RR+
Sbjct: 63 GKRVVPVQRESRYYPTEDVRRR 84
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 66.9 bits (156), Expect = 4e-10
Identities = 33/68 (48%), Positives = 39/68 (57%)
Frame = +1
Query: 307 FSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQR 486
F+ H RRIR ++ G V ILLAGRH KR TGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 487 YVIGTSTK 510
YVI T T+
Sbjct: 146 YVIATKTR 153
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 66.1 bits (154), Expect = 7e-10
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 262 YPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX 435
YPT++ + + +S +P S+ +R + GTV ILLAG H GKR
Sbjct: 92 YPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLLPV 151
Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTK 510
TGP+ N CPLRRI Q YVI TSTK
Sbjct: 152 TGPYGVNGCPLRRINQIYVIATSTK 176
Score = 57.6 bits (133), Expect = 3e-07
Identities = 29/69 (42%), Positives = 37/69 (53%)
Frame = +2
Query: 62 PRNYDLGNGVMRFSXSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 241
P+N+ L GV FS SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 242 LKRRSPSTP 268
LK+ S P
Sbjct: 85 LKKERRSYP 93
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 63.3 bits (147), Expect = 5e-09
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +1
Query: 253 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXX 432
+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKR
Sbjct: 31 QKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLGQGVLL 88
Query: 433 XTGPFAFNSCPLRRIPQRYVIGTST 507
TGPF N PLRR+ RYVI TS+
Sbjct: 89 VTGPFKLNGVPLRRVNARYVIATSS 113
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 62.9 bits (146), Expect = 7e-09
Identities = 35/84 (41%), Positives = 46/84 (54%)
Frame = +1
Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
FYP ++ ++ R +K + +R ++ GTV I+LAGR GKR T
Sbjct: 64 FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121
Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
GPF N PLRR+ Q YVIGTSTK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = +1
Query: 328 IRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGTST 507
+R ++ GTV I+LAGR AGKR TGPF N PLRRI QRYVI TST
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
Query: 508 K 510
K
Sbjct: 147 K 147
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/73 (43%), Positives = 41/73 (56%)
Frame = +1
Query: 298 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRI 477
GR ++ V ++R +LK G V ILL G + GKR TGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 478 PQRYVIGTSTKFH 516
RYVI TST +
Sbjct: 90 NSRYVIATSTNVY 102
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 60.9 bits (141), Expect = 3e-08
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX 435
FYP + K R S +P + ++R ++ GTV ILLAGR GKR
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTK 510
TGPF N P+RR+ Q YVI TSTK
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTK 134
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 59.3 bits (137), Expect = 8e-08
Identities = 45/135 (33%), Positives = 64/135 (47%)
Frame = +1
Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
+YP+++ + A R ++ +++R +L GTV ILLAGR GKR +
Sbjct: 9 WYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLIS 66
Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
GPF N PLRR+ RYVI TSTK N + NV+ AK +T
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-------------FNVEYFAKEKLTK 113
Query: 619 LPQKKRNTFHLEQRK 663
+K+ N F +Q K
Sbjct: 114 KEKKEANLFPEQQNK 128
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/76 (40%), Positives = 40/76 (52%)
Frame = +1
Query: 283 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSC 462
R S R S ++R +L+ G VCILLAG + GKR TGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 463 PLRRIPQRYVIGTSTK 510
P+RR+ Y+I TSTK
Sbjct: 80 PVRRVNPAYIIATSTK 95
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 58.4 bits (135), Expect = 1e-07
Identities = 32/83 (38%), Positives = 42/83 (50%)
Frame = +1
Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
+YP +K + K + +RP++K GT+ ILLAG G R T
Sbjct: 46 WYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVT 104
Query: 439 GPFAFNSCPLRRIPQRYVIGTST 507
GP+A N PL R+ QRYVI TST
Sbjct: 105 GPYAVNRIPLTRVDQRYVIATST 127
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 56.8 bits (131), Expect = 4e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 301 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRR 474
RP K +R P + GTV ILLAGR GKR TGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 475 IPQRYVIGTSTK 510
+ RYVI TS K
Sbjct: 84 VNARYVIATSQK 95
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 54.4 bits (125), Expect = 2e-06
Identities = 32/105 (30%), Positives = 51/105 (48%)
Frame = +1
Query: 322 RRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGT 501
R++R ++++G V I+L G+H GKR GP+ N PL+R+ RY+I T
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVT 127
Query: 502 STKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 636
ST N + + I+SA + N + + S+ KKR
Sbjct: 128 STNIFDF-----NNLSQVKEKFIQSAERI--NDEIFIKSMDVKKR 165
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +1
Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
FYP + + +K+ +IR +L+ GT+ ILLAG + GKR +
Sbjct: 68 FYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVLLKALKSGLLLVS 127
Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
GP N PLRR+ Q+ VI TST+
Sbjct: 128 GPLKVNRVPLRRVHQKLVIATSTR 151
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 507 QISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPS 650
+I + N K+P+H ND YF EG DIFA+K E+Y P+
Sbjct: 151 RIDISNVKVPEHINDTYF----RRHKVKKEAKEG-DIFASKPERYTPT 193
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 49.6 bits (113), Expect = 7e-05
Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 328 IRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX-TGPFAFNSCPLRRIPQRYVIGTS 504
+R L GTV I+LAGRH GKR TGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 505 TK 510
K
Sbjct: 127 LK 128
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 48.8 bits (111), Expect = 1e-04
Identities = 31/77 (40%), Positives = 38/77 (49%)
Frame = +1
Query: 280 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNS 459
+R RP + +R+I P G V ILL+GR GKR TGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 460 CPLRRIPQRYVIGTSTK 510
PL+R+ YVI TSTK
Sbjct: 98 VPLKRVNSAYVIPTSTK 114
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 47.2 bits (107), Expect = 4e-04
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 352 TVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGTSTKFHSATSN 531
TV I+L GRH GKR TGP A N PL R+ Q VI T TK
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTK----VDI 68
Query: 532 CQ-NTSMMITSRRIRSASNVQSNAKR 606
C+ TS +T + S Q+ A R
Sbjct: 69 CKVKTSKHLTDASFKKQSAAQAQAPR 94
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 44.0 bits (99), Expect = 0.003
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 IRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX-TGPFAFNSCPLRRIPQRYVIGTS 504
+R + G + I+LAGR G+R +GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 505 T 507
T
Sbjct: 89 T 89
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = +1
Query: 331 RPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGTSTK 510
RP+LK+GTV I++ G H GKR GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 511 FHSATS 528
A +
Sbjct: 109 IEVAAN 114
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 37.9 bits (84), Expect = 0.22
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 274 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAF 453
EK +A + +P VRR +L G V ++L G A +R GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 454 NSCPLRRIPQRYVIGTST 507
N PL RI +RY++ TST
Sbjct: 65 NGIPLFRIDERYLLATST 82
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 36.3 bits (80), Expect = 0.66
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTK 510
TG F N PLRR+ Q YVI TSTK
Sbjct: 172 TGSFKINGVPLRRVNQAYVIATSTK 196
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 35.9 bits (79), Expect = 0.88
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
GPF+ N P+RRI Q++V+ TSTK
Sbjct: 15 GPFSINGVPVRRIAQKFVLPTSTK 38
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 33.5 bits (73), Expect = 4.7
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 41 KKKSTKKPRNYDLGNGVMRFSXSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 220
+K + RN L G R+S ++ +K Y + + V+K + G+KN
Sbjct: 41 RKGKSHCTRNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKN 98
Query: 221 GGTRTVPLKR 250
GGT V L++
Sbjct: 99 GGTGVVKLQK 108
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 413 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 279
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.7 bits (71), Expect = 8.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 440 PVTKSRPXGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 309
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_Q9VHM8 Cluster: CG8136-PB, isoform B; n=3; Drosophila
melanogaster|Rep: CG8136-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 441
Score = 32.7 bits (71), Expect = 8.2
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 451 FNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQK 630
+ P R + + V TK H+ + NCQ + + ++ SA+N Q + SLPQ
Sbjct: 39 YRRLPSRSLNRSQVTDVPTKGHTTSENCQLPAQELETK---SATNEQGALGIMSVSLPQT 95
Query: 631 KRNT 642
RN+
Sbjct: 96 TRNS 99
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 32.7 bits (71), Expect = 8.2
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 331 RPNLKIGTVCILLAGRHAGKR 393
+P +K G VCI+L GRHAGK+
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase
GCN5-B; n=1; Toxoplasma gondii|Rep: GNAT family histone
acetyltransferase GCN5-B - Toxoplasma gondii
Length = 1032
Score = 32.7 bits (71), Expect = 8.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 479 GIRRSGHELKAKGPVTKSRPXGRIPTSTTLLPACLPARRMQTVPI 345
G RRS H A+GP S GR+P S PA R + P+
Sbjct: 157 GSRRSSHAEPAEGPSLPSGADGRLPASGPWASEAPPAGRSASAPV 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,650,012
Number of Sequences: 1657284
Number of extensions: 11794508
Number of successful extensions: 29245
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29216
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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