Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    71   3e-11
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    40   0.055
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    40   0.072
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   2.1  
UniRef50_Q2W721 Cluster: NADPH; n=3; Magnetospirillum|Rep: NADPH...    34   3.6  
UniRef50_A2ZC91 Cluster: Putative uncharacterized protein; n=3; ...    34   3.6  
UniRef50_A7HFE6 Cluster: LigA; n=1; Anaeromyxobacter sp. Fw109-5...    34   4.8  
UniRef50_Q6AG37 Cluster: Transcriptional regulator, sugar-bindin...    33   6.3  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 31/49 (63%), Positives = 35/49 (71%)
 Frame = -3

Query: 210 TSIDRRSISLKWQ*AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
           T I RR   +KWQ AGHIAR  D RWG+ VL+WRPR  RRSV R PTR+
Sbjct: 412 TDIARRIAKIKWQWAGHIARRADGRWGRKVLEWRPRAGRRSVGRPPTRW 460



 Score = 36.3 bits (80), Expect = 0.89
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 183 TKWTDDLLRFAGIRCMQTVQDRSL 254
           T+WTDDL++ AG   MQ  QDRSL
Sbjct: 458 TRWTDDLVKVAGSTWMQAAQDRSL 481


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 40.3 bits (90), Expect = 0.055
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 180 KWQ*AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
           KW  AGHI+R  DNRW   +  W P   +R+  R   R+
Sbjct: 361 KWNWAGHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRW 399


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 39.9 bits (89), Expect = 0.072
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
           AGH+AR  D RW   + +WRP   +R V R+P R+
Sbjct: 203 AGHVARRKDGRWTTLMTEWRPWNWKRYVGRTPMRW 237


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +3

Query: 612 SEVKTIPLSFSLDLLSGSRFRSGDRF 689
           +E +  PLSFS DLLSGSRFR+G  +
Sbjct: 390 NEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q2W721 Cluster: NADPH; n=3; Magnetospirillum|Rep: NADPH -
           Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
          Length = 349

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 66  ILWETYPRYVFR--YAVANQERSGPSGYPFHEQCVLLTATSTKWTDDLLRFAGIRCMQTV 239
           I W TY  YV    Y VA      P+G+ F + C +  A  T W   LL  AG+R  Q+V
Sbjct: 129 IQWGTYAEYVVMSAYGVAPM----PAGFTFAQACTVPLAALTAW-QSLLEVAGLRPGQSV 183


>UniRef50_A2ZC91 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 904

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -3

Query: 297 SRCPLRHTASTQPRPKTGPALSAYSGSPRTSIDRRSISLKWQ*AGHIARGTDNRWGQNVL 118
           SR P+RH  S   RPK+GP    YSG  +  + R   S +W    H      N WG  V+
Sbjct: 814 SRSPVRHLGSLPLRPKSGP--MTYSGEKQLGVPREP-SSRW----HGGAEGGNAWGMVVV 866


>UniRef50_A7HFE6 Cluster: LigA; n=1; Anaeromyxobacter sp.
           Fw109-5|Rep: LigA - Anaeromyxobacter sp. Fw109-5
          Length = 256

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 279 HTASTQPRPKTGPALSAYSGSPRTSIDRRSISLKWQ*--AGHIARGTDNRWGQNVLDWRP 106
           H +S  PR + G A       PR S  RR+   + +   AG  +RG+  R G+ V   RP
Sbjct: 102 HRSSVAPRRELGDAAPTRGSRPRGSRPRRAGRARHRARHAGGRSRGSPPRGGRGVRPGRP 161

Query: 105 RTERR 91
           R  RR
Sbjct: 162 RPRRR 166


>UniRef50_Q6AG37 Cluster: Transcriptional regulator, sugar-binding
           family; n=2; Actinobacteria (class)|Rep: Transcriptional
           regulator, sugar-binding family - Leifsonia xyli subsp.
           xyli
          Length = 406

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 523 STFAFTLGYLRIASACSDTG*C-PSDIDKFIPK*KLSH*VSHWIFSVDRVSDPVIDSAT 696
           S F F+ G + I+S   D+G   P D+  F  K  +   V  +I +  RV+ PV+DS T
Sbjct: 204 SAFLFSAGVVDISSVHVDSGYLSPQDVRAFAEKGAVGDVVGRFITAEGRVAAPVLDSRT 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,795,734
Number of Sequences: 1657284
Number of extensions: 17768614
Number of successful extensions: 51927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51881
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)