Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q84K15 Cluster: Putative uncharacterized protein OSJNBa...    36   1.3  
UniRef50_A3LWR4 Cluster: Transcription activator involved in pro...    33   5.2  
UniRef50_P73700 Cluster: Slr1815 protein; n=4; Cyanobacteria|Rep...    33   6.9  
UniRef50_A2E034 Cluster: Dynein heavy chain family protein; n=1;...    33   6.9  

>UniRef50_Q84K15 Cluster: Putative uncharacterized protein
           OSJNBa0037J17.9; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0037J17.9 - Oryza sativa subsp. japonica (Rice)
          Length = 190

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 350 TSVKYVFH*TNWYPSAGFEHRCIVTYECTG 439
           T V++VF    W+PS G   RC VT EC G
Sbjct: 67  TDVRWVFGDEKWWPSYGGMQRCRVTLECAG 96


>UniRef50_A3LWR4 Cluster: Transcription activator involved in proline
            utilization potential fungal Zn(2)-Cys(6) binuclear
            cluster domain; n=3; Saccharomycetales|Rep: Transcription
            activator involved in proline utilization potential
            fungal Zn(2)-Cys(6) binuclear cluster domain - Pichia
            stipitis (Yeast)
          Length = 1061

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 403  RTPVHCYIRMHRTSYPLG---HDDFVYTRPCTLRVRHFWKGGILVTSRGYAG 549
            +TP+H YI  H TSYPLG    D F YT P  +   +   GG + T+   AG
Sbjct: 904  QTPIHPYI--HTTSYPLGTMSGDTFSYTIPTPMNGNN--TGGDVYTNSDLAG 951


>UniRef50_P73700 Cluster: Slr1815 protein; n=4; Cyanobacteria|Rep:
           Slr1815 protein - Synechocystis sp. (strain PCC 6803)
          Length = 178

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = -3

Query: 457 DLKDKTSGAFVCN--NAPVFESRRRVPICLMKYVL-----NRCSRLTSTVKE*HRVIKKT 299
           D+ D+    +VCN  N  +FE    V +    +VL     N    LTST+KE HRV+ + 
Sbjct: 24  DVLDRPEVDYVCNASNLSMFEDNS-VDVIYASHVLEHFYYNIDDELTSTLKEWHRVL-RI 81

Query: 298 GSKLLVS 278
           G KL++S
Sbjct: 82  GGKLMIS 88


>UniRef50_A2E034 Cluster: Dynein heavy chain family protein; n=1;
            Trichomonas vaginalis G3|Rep: Dynein heavy chain family
            protein - Trichomonas vaginalis G3
          Length = 3926

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 253  VGYLSTRVGSQEAYYQFFLLHDVIPSPWKSIVNIC 357
            + YL TR   +  Y  FF+  D +P  WK + N+C
Sbjct: 2498 IKYLYTRYARESEYESFFV--DTVPDAWKYVYNLC 2530


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,092,776
Number of Sequences: 1657284
Number of extensions: 14229105
Number of successful extensions: 30819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30814
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)