Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30062
         (860 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    35   2.3  
UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1; ...    35   3.0  
UniRef50_Q5CTS8 Cluster: Putative uncharacterized protein; n=2; ...    34   5.3  
UniRef50_Q8IEH8 Cluster: Putative uncharacterized protein PF13_0...    33   9.3  

>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 311 LFGYIYNNFNVYLYLYILWSLETFFKQYYFQTFHIILQIYSF 186
           +F YIY    VY+YLYI + + T+   Y F   +I L IY +
Sbjct: 21  IFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLY 62


>UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 337

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 238 SSNTIFKHSILFYKYILLNLKTNNIYLLSSESKRI-KVCAKRHRYRF 101
           SSN IFK  I+ Y YI+ N K NNI  + S    I K+  K++   F
Sbjct: 215 SSNLIFKFFIVKYFYIVTNFKFNNIKEIKSNKNTILKITLKKNFLNF 261


>UniRef50_Q5CTS8 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 599

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 332 TFSKQENLFGYIYN--NFNVYLYLYILWSLETFFKQYYFQTFHIILQIYSFKLK 177
           TFS  ++L+  IYN  +F+  + L  +  LE +  +YY +     L I+SF+L+
Sbjct: 436 TFSSCQDLYLQIYNVFSFSKPILLITISFLENYMVEYYRKMLEFCLSIFSFELR 489


>UniRef50_Q8IEH8 Cluster: Putative uncharacterized protein
           PF13_0078; n=3; Plasmodium|Rep: Putative uncharacterized
           protein PF13_0078 - Plasmodium falciparum (isolate 3D7)
          Length = 1737

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 36  VFIFRIFSDHKTYLLLGLDSTMNLYRCLLAQTLIRLLSELSK*ILLVFKFK 188
           +FI  I  D +TY L+G +  +  Y C     +  LL+ LS  I ++F++K
Sbjct: 341 IFITYILKDVRTYFLVGFNLYVKTYSCKFMIIVCVLLNMLSLGIYVLFQYK 391


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,887,287
Number of Sequences: 1657284
Number of extensions: 14206744
Number of successful extensions: 29018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28785
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)