SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT t...    93   2e-18
UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2; ...    90   2e-17
UniRef50_Q94547 Cluster: Regulator of gene activity; n=3; Sophop...    76   3e-13
UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:...    75   5e-13
UniRef50_Q9NZN8 Cluster: CCR4-NOT transcription complex subunit ...    39   0.054
UniRef50_Q4TC75 Cluster: Chromosome undetermined SCAF7048, whole...    38   0.071
UniRef50_Q1MNU4 Cluster: Putative uncharacterized protein LIC037...    34   1.5  
UniRef50_Q9I7K2 Cluster: CG4655-PA, isoform A; n=4; Diptera|Rep:...    33   3.5  
UniRef50_A7RSD0 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    33   3.5  
UniRef50_A5E3K8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.5  
UniRef50_A6PWQ7 Cluster: Likely orthologue of H. sapiens chromos...    31   8.1  
UniRef50_Q9ULT8 Cluster: E3 ubiquitin-protein ligase HECTD1; n=5...    31   8.1  

>UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b; n=2;
           Endopterygota|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b - Tribolium
           castaneum
          Length = 483

 Score = 93.1 bits (221), Expect = 2e-18
 Identities = 48/80 (60%), Positives = 57/80 (71%)
 Frame = +3

Query: 9   SSMSNLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARGAGDQXXXXXXXXXGSKP 188
           S M N++     ++++SVFG G DT+TP LLDLSEFPSLT R +GD          G+KP
Sbjct: 53  SQMGNMNSLGGYSSFNSVFGSG-DTNTPSLLDLSEFPSLTNRSSGDNVPQPSPMP-GAKP 110

Query: 189 YVGMVKQPTSEQSEFTMSSE 248
           YVGMVKQPTSE SEFTMSSE
Sbjct: 111 YVGMVKQPTSEASEFTMSSE 130


>UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2;
           Endopterygota|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 513

 Score = 90.2 bits (214), Expect = 2e-17
 Identities = 51/76 (67%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
 Frame = +3

Query: 36  NAGNNYHSVFGEG-GDTSTPPLLDLSEFPSLT-ARGA-GDQXXXXXXXXX--GSKPYVGM 200
           N+ NN+HSVF  G  +T TPPLLDLSEFPSLT ARG   DQ           GSKPYVGM
Sbjct: 157 NSINNFHSVFDNGTAETGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYVGM 216

Query: 201 VKQPTSEQSEFTMSSE 248
           VKQPTSEQ+EFTMSSE
Sbjct: 217 VKQPTSEQTEFTMSSE 232


>UniRef50_Q94547 Cluster: Regulator of gene activity; n=3;
           Sophophora|Rep: Regulator of gene activity - Drosophila
           melanogaster (Fruit fly)
          Length = 585

 Score = 76.2 bits (179), Expect = 3e-13
 Identities = 49/79 (62%), Positives = 52/79 (65%), Gaps = 11/79 (13%)
 Frame = +3

Query: 45  NNYHSVFGEGG--DTSTPPLLDLSEFPSLT-ARGAGDQXXXXXXXXX--GSKPY------ 191
           NN+H VFG GG  DTSTP LLD +EFPSLT ARG  DQ           GSKPY      
Sbjct: 141 NNFH-VFGGGGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTS 199

Query: 192 VGMVKQPTSEQSEFTMSSE 248
            GMVKQPTSEQSEFTMS+E
Sbjct: 200 FGMVKQPTSEQSEFTMSNE 218


>UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:
           ENSANGP00000026958 - Anopheles gambiae str. PEST
          Length = 537

 Score = 75.4 bits (177), Expect = 5e-13
 Identities = 48/82 (58%), Positives = 51/82 (62%), Gaps = 11/82 (13%)
 Frame = +3

Query: 36  NAGNNYHSVF-GEGGDTSTPPLLDLSEFPSLT-ARGA-GDQ--XXXXXXXXXGSKPY--- 191
           N+ NNYH VF G   +T TPPLLDLSEFPSLT ARG   DQ           GSKPY   
Sbjct: 140 NSINNYHGVFDGSAAETGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYGKS 199

Query: 192 ---VGMVKQPTSEQSEFTMSSE 248
               GMVKQPTSEQ  FTMS+E
Sbjct: 200 VAHFGMVKQPTSEQIAFTMSNE 221


>UniRef50_Q9NZN8 Cluster: CCR4-NOT transcription complex subunit 2;
           n=58; Eumetazoa|Rep: CCR4-NOT transcription complex
           subunit 2 - Homo sapiens (Human)
          Length = 540

 Score = 38.7 bits (86), Expect = 0.054
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +3

Query: 15  MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
           M+    F   N+  S    G D S     LDLS+FP+L  R    G+G+          G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254

Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
             PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278


>UniRef50_Q4TC75 Cluster: Chromosome undetermined SCAF7048, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF7048,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 560

 Score = 38.3 bits (85), Expect = 0.071
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +3

Query: 99  LDLSEFPSL---TARGAGDQXXXXXXXXXGSKPYVGMVKQPTSEQS-EFTMSSE 248
           LDLS+FP+L   + R A            G  PYVGMV +P+ EQS +F++ +E
Sbjct: 273 LDLSDFPALADRSRRDAASNPAPLPNPLAGRAPYVGMVTKPSGEQSQDFSIHNE 326


>UniRef50_Q1MNU4 Cluster: Putative uncharacterized protein LIC037;
           n=1; Lawsonia intracellularis PHE/MN1-00|Rep: Putative
           uncharacterized protein LIC037 - Lawsonia
           intracellularis (strain PHE/MN1-00)
          Length = 1607

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 58  QFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALNPML 195
           QF     IH HHH      +HH QQ+     HPL HHH +   P+L
Sbjct: 403 QFQHYKYIHHHHHSHHQHRYHHQQQQHH--HHPL-HHHYKIGIPLL 445


>UniRef50_Q9I7K2 Cluster: CG4655-PA, isoform A; n=4; Diptera|Rep:
           CG4655-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 503

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALNPMLVW 201
           H HHH     + HH QQ+       +QHH    L P+  W
Sbjct: 88  HHHHHHRLQHHHHHHQQQHNHQNQQMQHHWPSRLGPIGPW 127


>UniRef50_A7RSD0 Cluster: Predicted protein; n=2; Eukaryota|Rep:
           Predicted protein - Nematostella vectensis
          Length = 87

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           H HHH +   + HH Q + R+ +    HHH
Sbjct: 18  HHHHHHYHYHHHHHYQHQKRINQQHHHHHH 47


>UniRef50_A5E3K8 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 818

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 79  IHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           +HQHHH       HH QQ+ +  +  LQHHH
Sbjct: 268 LHQHHHH------HHHQQQQQQQQQQLQHHH 292


>UniRef50_A6PWQ7 Cluster: Likely orthologue of H. sapiens chromosome
           X open reading frame 6; n=2; Eutheria|Rep: Likely
           orthologue of H. sapiens chromosome X open reading frame
           6 - Mus musculus (Mouse)
          Length = 803

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 34  STLATTTIQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           S+ AT T+Q        QHHH       HH QQ+    +H  QHHH
Sbjct: 582 SSTATATLQL-------QHHHQQHHHQQHHHQQQHHQQQHHQQHHH 620


>UniRef50_Q9ULT8 Cluster: E3 ubiquitin-protein ligase HECTD1; n=59;
            Deuterostomia|Rep: E3 ubiquitin-protein ligase HECTD1 -
            Homo sapiens (Human)
          Length = 2612

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 21   NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
            NLSR ++ NN +++      T+T PL+    FP+LT  G
Sbjct: 1567 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 1605


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,226,983
Number of Sequences: 1657284
Number of extensions: 5343837
Number of successful extensions: 14168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14081
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -