Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0044.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0N2R6 Cluster: Signal recognition particle receptor be...    84   2e-15
UniRef50_UPI0000D571E3 Cluster: PREDICTED: similar to Signal rec...    50   4e-05
UniRef50_UPI00015B56C7 Cluster: PREDICTED: similar to signal rec...    45   0.001
UniRef50_Q7Q513 Cluster: ENSANGP00000020947; n=2; Culicidae|Rep:...    35   1.3  
UniRef50_Q9Y5M8 Cluster: Signal recognition particle receptor su...    32   8.9  

>UniRef50_Q0N2R6 Cluster: Signal recognition particle receptor beta
           subunit; n=2; Endopterygota|Rep: Signal recognition
           particle receptor beta subunit - Bombyx mori (Silk moth)
          Length = 280

 Score = 84.2 bits (199), Expect = 2e-15
 Identities = 41/53 (77%), Positives = 44/53 (83%)
 Frame = +2

Query: 254 QTLLXVRLAYSQYRQTXTSMKEXXEEYITSNKXLEIVDLPXQERLSDKXFXQH 412
           +TLL VRLAYSQYRQT TSMKE  EEYITSNK L+IVDLP QERL +K F QH
Sbjct: 60  KTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQH 112



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/43 (62%), Positives = 28/43 (65%)
 Frame = +3

Query: 129 DXRYXXXXXXXXXXXXXXFWWIFSRRYTLRNSVLLMGLSDSGR 257
           D RY              FWWIFSRRYTLRNSVLLMGLSDSG+
Sbjct: 18  DPRYITLLSLIVLAVTLIFWWIFSRRYTLRNSVLLMGLSDSGK 60



 Score = 43.2 bits (97), Expect = 0.005
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = +3

Query: 462 QKXIRDVAE*PIHDLVDPXIQGNXTXXLVLCNRQXPAISR 581
           QK IRDVAE     L DP IQGN T  L+LCN+Q   +++
Sbjct: 129 QKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAK 168


>UniRef50_UPI0000D571E3 Cluster: PREDICTED: similar to Signal
           recognition particle receptor beta subunit (SR-beta)
           (Protein APMCF1); n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to Signal recognition particle
           receptor beta subunit (SR-beta) (Protein APMCF1) -
           Tribolium castaneum
          Length = 242

 Score = 50.0 bits (114), Expect = 4e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +2

Query: 254 QTLLXVRLAYSQYRQTXTSMKEXXEEYITSNKXLEIVDLPXQERLSDKXFXQH 412
           +TL+  +L Y ++ QT TS+KE    YI +N  L+IVD+P  ERL +K   Q+
Sbjct: 54  KTLIFSQLVYEKFIQTHTSIKENIGTYIVNNNYLKIVDIPGHERLRNKFIEQY 106


>UniRef50_UPI00015B56C7 Cluster: PREDICTED: similar to signal
           recognition particle receptor beta subunit; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to signal
           recognition particle receptor beta subunit - Nasonia
           vitripennis
          Length = 286

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +2

Query: 254 QTLLXVRLAYSQYRQTXTSMKEXXEEYITSNKXLEIVDLPXQERLSDKXFXQH 412
           +TL+  RL +++Y QT TS+KE   + +  N  ++IVD+P  ERL  K F ++
Sbjct: 98  KTLIYARLMHTKYVQTHTSVKENIGDALEYNSSVKIVDIPGHERLRYKYFDKY 150


>UniRef50_Q7Q513 Cluster: ENSANGP00000020947; n=2; Culicidae|Rep:
           ENSANGP00000020947 - Anopheles gambiae str. PEST
          Length = 244

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 254 QTLLXVRLAYSQYRQTXTSMKEXXEEYITSN-KXLEIVDLPXQERLSDKXFXQH 412
           +T L   L     R+T TS+KE    + T   + L++VD+P  ERL  K F ++
Sbjct: 61  KTYLFAHLCLGGARETFTSIKENVGSFKTERGRVLKMVDVPGNERLRGKFFDEY 114


>UniRef50_Q9Y5M8 Cluster: Signal recognition particle receptor
           subunit beta; n=115; Euteleostomi|Rep: Signal
           recognition particle receptor subunit beta - Homo
           sapiens (Human)
          Length = 271

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 254 QTLLXVRLAYSQYRQTXTSMKEXXEEYITSN---KXLEIVDLPXQERL 388
           +TLL VRL    YR T TS+ +    Y  +N     L ++DLP  E L
Sbjct: 77  KTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESL 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,425,767
Number of Sequences: 1657284
Number of extensions: 3975669
Number of successful extensions: 5242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5242
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)