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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0033
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q83S36 Cluster: UPF0194 membrane protein ybhG precursor...    62   1e-08
UniRef50_Q1R8J2 Cluster: Putative uncharacterized protein; n=1; ...    52   1e-05
UniRef50_P77130 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_P71310 Cluster: Putative uncharacterized protein; n=3; ...    52   2e-05
UniRef50_A2UL04 Cluster: Putative uncharacterized protein; n=1; ...    51   3e-05
UniRef50_A7MJ26 Cluster: Putative uncharacterized protein; n=1; ...    47   5e-04
UniRef50_Q79BJ0 Cluster: Putative uncharacterized protein; n=2; ...    46   7e-04
UniRef50_UPI00015C4E7E Cluster: hypothetical protein EcHS_A0562;...    45   0.002
UniRef50_Q8FAY0 Cluster: Putative uncharacterized protein; n=1; ...    43   0.007
UniRef50_UPI00015C4E47 Cluster: hypothetical protein EcE24377A_3...    42   0.015
UniRef50_UPI00015C4DFC Cluster: hypothetical protein EcHS_A4250;...    40   0.047
UniRef50_Q8E860 Cluster: Lambda repressor superfamily protein; n...    35   1.8  
UniRef50_UPI00015C5062 Cluster: hypothetical protein EcHS_A2581;...    27   3.5  
UniRef50_UPI0000226479 Cluster: hypothetical protein ECs5564; n=...    34   4.1  
UniRef50_Q47342 Cluster: LivJ protein; n=4; Escherichia coli|Rep...    33   5.4  
UniRef50_A6S3T2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_UPI00015C6023 Cluster: hypothetical protein CKO_03909; ...    33   7.2  
UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,...    33   7.2  
UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q83S36 Cluster: UPF0194 membrane protein ybhG precursor;
           n=39; Bacteria|Rep: UPF0194 membrane protein ybhG
           precursor - Shigella flexneri
          Length = 332

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 32/49 (65%), Positives = 34/49 (69%)
 Frame = +3

Query: 510 AQDKLRQYRSGNREQDIAQAKAAXXXXXXXXXXXXXIYRDSTLIAPSDG 656
           AQDKLRQYRSGNREQDIAQAKA+               +DSTLIAPSDG
Sbjct: 165 AQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDG 213



 Score = 40.7 bits (91), Expect = 0.036
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 451 ANDLENARSSRDQAQATLK 507
           ANDLENARSSRDQAQATLK
Sbjct: 145 ANDLENARSSRDQAQATLK 163


>UniRef50_Q1R8J2 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli UTI89|Rep: Putative uncharacterized
           protein - Escherichia coli (strain UTI89 / UPEC)
          Length = 102

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 24/37 (64%), Positives = 26/37 (70%)
 Frame = -1

Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFY 57
           MPDATL ASYQAY+      CW  RPDKAF PHPA +
Sbjct: 1   MPDATLAASYQAYN-----RCWSGRPDKAFTPHPASF 32


>UniRef50_P77130 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 95

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 28/43 (65%), Positives = 29/43 (67%)
 Frame = +3

Query: 63  CRMRRERLIRPTKPAISIRCKTVGLIRRGKRRIRH*APNAGCG 191
           CRMRR+RLIRPT P        VGLIR  K RIRH AP AGCG
Sbjct: 5   CRMRRKRLIRPTDPV-----PIVGLIRCVKHRIRHCAPIAGCG 42


>UniRef50_P71310 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 103

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 25/41 (60%), Positives = 26/41 (63%)
 Frame = -1

Query: 173 CSMPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYAL 51
           C+MPDATL ASYQAY          CRPDKAF PHPA   L
Sbjct: 35  CAMPDATLCASYQAYGLRAK-----CRPDKAFTPHPAVVLL 70


>UniRef50_A2UL04 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli B|Rep: Putative uncharacterized protein
           - Escherichia coli B
          Length = 49

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 25/34 (73%), Positives = 28/34 (82%)
 Frame = -3

Query: 264 EKTSRVTRHEIEDAKAVVDRXRCSRRIRHSVLNA 163
           +K +RVTR+EI D KAVV R R SRRIRHSVLNA
Sbjct: 16  KKPARVTRYEIADTKAVVGRKRRSRRIRHSVLNA 49


>UniRef50_A7MJ26 Cluster: Putative uncharacterized protein; n=1;
           Enterobacter sakazakii ATCC BAA-894|Rep: Putative
           uncharacterized protein - Enterobacter sakazakii ATCC
           BAA-894
          Length = 333

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +3

Query: 510 AQDKLRQYRSGNREQDIAQAKAAXXXXXXXXXXXXXIYRDSTLIAPSDG 656
           AQDKL QYR+GNR Q+I QA+AA               +D+ L++PSDG
Sbjct: 164 AQDKLSQYRAGNRPQEIVQAQAALEQAQAELAQAQLNAQDTRLVSPSDG 212



 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 451 ANDLENARSSRDQAQATLK 507
           ANDLENARS+RDQ QA LK
Sbjct: 144 ANDLENARSARDQTQAQLK 162


>UniRef50_Q79BJ0 Cluster: Putative uncharacterized protein; n=2;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 80

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 24/38 (63%), Positives = 24/38 (63%)
 Frame = -1

Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYA 54
           MPDATL ASYQAY       C   RPDKAF PHPA  A
Sbjct: 16  MPDATLAASYQAYK-----RCQNRRPDKAFTPHPAISA 48


>UniRef50_UPI00015C4E7E Cluster: hypothetical protein EcHS_A0562;
           n=2; Escherichia coli HS|Rep: hypothetical protein
           EcHS_A0562 - Escherichia coli HS
          Length = 88

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 26/51 (50%), Positives = 31/51 (60%)
 Frame = +3

Query: 63  CRMRRERLIRPTKPAISIRCKTVGLIRRGKRRIRH*APNAGCGVNTVXGLQ 215
           CRMRR+RLIRPT  A   R       +  KRRIR    +AGCGVN + GL+
Sbjct: 17  CRMRRKRLIRPTVQAQVCRPD-----KTRKRRIRQWCSDAGCGVNALSGLR 62


>UniRef50_Q8FAY0 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli O6|Rep: Putative uncharacterized
           protein - Escherichia coli O6
          Length = 52

 Score = 43.2 bits (97), Expect = 0.007
 Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 167 MPDATLTASYQAYSFTTY*NCW--FCRPDKAFAPHP 66
           M DAT+ ASYQAY+       W  FCR DKAF PHP
Sbjct: 1   MSDATVAASYQAYARQRNSLIWRDFCRSDKAFTPHP 36


>UniRef50_UPI00015C4E47 Cluster: hypothetical protein
           EcE24377A_3473; n=2; Escherichia coli|Rep: hypothetical
           protein EcE24377A_3473 - Escherichia coli E24377A
          Length = 63

 Score = 41.9 bits (94), Expect = 0.015
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = -2

Query: 214 CRPXTVFTPHPAFGAQCLMR 155
           CRP   FTPHPA GAQCLMR
Sbjct: 23  CRPDKAFTPHPALGAQCLMR 42



 Score = 35.1 bits (77), Expect = 1.8
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 167 MPDATLTASYQAYSFTTY*NCWFCRPDKAFAPHPAFYA 54
           MPDA  ++  Q Y      +   CRPDKAF PHPA  A
Sbjct: 1   MPDALRSSGLQ-YLLQHVESSCVCRPDKAFTPHPALGA 37


>UniRef50_UPI00015C4DFC Cluster: hypothetical protein EcHS_A4250;
           n=1; Escherichia coli HS|Rep: hypothetical protein
           EcHS_A4250 - Escherichia coli HS
          Length = 78

 Score = 40.3 bits (90), Expect = 0.047
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -2

Query: 211 RPXTVFTPHPAFGAQCLMRRL 149
           RP   FTPHPA GA+CLMRRL
Sbjct: 19  RPDKAFTPHPAIGARCLMRRL 39


>UniRef50_Q8E860 Cluster: Lambda repressor superfamily protein;
           n=17; Gammaproteobacteria|Rep: Lambda repressor
           superfamily protein - Shewanella oneidensis
          Length = 95

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -1

Query: 326 MSFFDELKTSLEEAVEIKXCLKKP 255
           MS F+EL+ SLEEAVEI   LKKP
Sbjct: 1   MSIFNELQASLEEAVEIHHGLKKP 24


>UniRef50_UPI00015C5062 Cluster: hypothetical protein EcHS_A2581;
           n=1; Escherichia coli HS|Rep: hypothetical protein
           EcHS_A2581 - Escherichia coli HS
          Length = 66

 Score = 26.6 bits (56), Expect(2) = 3.5
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 167 MPDATLTASYQAY 129
           MPDATL ASY AY
Sbjct: 1   MPDATLAASYPAY 13



 Score = 26.6 bits (56), Expect(2) = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 98 CRPDKAFAPHP 66
          CR DKAF PHP
Sbjct: 51 CRADKAFTPHP 61


>UniRef50_UPI0000226479 Cluster: hypothetical protein ECs5564; n=1;
           Escherichia coli O157:H7 str. Sakai|Rep: hypothetical
           protein ECs5564 - Escherichia coli O157:H7 str. Sakai
          Length = 60

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +2

Query: 62  MPDAARTPYPAYKT 103
           MPDAARTPYPAYK+
Sbjct: 46  MPDAARTPYPAYKS 59


>UniRef50_Q47342 Cluster: LivJ protein; n=4; Escherichia coli|Rep:
           LivJ protein - Escherichia coli
          Length = 170

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 185 SGIRCSMPDATLTASYQAY-SFTTY*NCWFCRPDKAFAPHPA 63
           S  +  +PDA   +  Q    FT +     CRPDKAF PHPA
Sbjct: 131 SDFKSVLPDALRLSGLQCVLQFTDFFGS--CRPDKAFTPHPA 170


>UniRef50_A6S3T2 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 486

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 6   ELVEPKRIKYKRIAK*CVKCRMRRERLIRPTKPAISIRCKTVGL 137
           E     R+K++++   C  C++RR +  + TKP+   RCK  G+
Sbjct: 34  EASRKSRVKHQKVKTGCYTCKVRRVKCDQETKPSCK-RCKKTGI 76


>UniRef50_UPI00015C6023 Cluster: hypothetical protein CKO_03909;
           n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
           protein CKO_03909 - Citrobacter koseri ATCC BAA-895
          Length = 52

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 146 ASYQAYSFTT-Y*NCWFCRPDKAFAPHPAFYALL-RNTLVLDTLRLH 12
           A Y AY     Y  C++ RPDK F P    YAL  R TL L  LR++
Sbjct: 4   APYPAYRLCAKYPGCFY-RPDKVFTPPSGIYALFCRMTLRLSGLRMN 49


>UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,
           beta subunit, B2; n=1; Escherichia coli UTI89|Rep:
           Ribonucleoside diphosphage reductase 1, beta subunit, B2
           - Escherichia coli (strain UTI89 / UPEC)
          Length = 103

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 60  KCRMRRERLIRPTKPAISIRCK-TVGLIRR 146
           +CRMRRERLIRPT     + C   VGLIRR
Sbjct: 40  ECRMRRERLIRPT-----VLCSDLVGLIRR 64


>UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 123

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +3

Query: 54  CVKCRMRRERLIRPTKPA 107
           C  CRMRRERLIRPT  A
Sbjct: 27  CHHCRMRRERLIRPTNGA 44



 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +3

Query: 54  CVKCRMRRERLIRPTKPA 107
           C  CRMRRERLIRPT  A
Sbjct: 89  CHHCRMRRERLIRPTSGA 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,089,723
Number of Sequences: 1657284
Number of extensions: 11878889
Number of successful extensions: 26922
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26912
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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