Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3YA01 Cluster: Lipopolysaccharide O-side chain biosynt...    34   3.1  
UniRef50_Q9TVI2 Cluster: Putative uncharacterized protein plc-1;...    34   3.1  
UniRef50_Q9GUP2 Cluster: Enhancer of efl-1 mutant phenotype prot...    33   5.4  
UniRef50_Q61YX3 Cluster: Putative uncharacterized protein CBG033...    33   5.4  
UniRef50_A0CAL5 Cluster: Chromosome undetermined scaffold_161, w...    33   7.2  
UniRef50_A2FY68 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A3YA01 Cluster: Lipopolysaccharide O-side chain
           biosynthesis protein; n=1; Marinomonas sp. MED121|Rep:
           Lipopolysaccharide O-side chain biosynthesis protein -
           Marinomonas sp. MED121
          Length = 453

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 558 INYVSFTKRLDCLTLPLVCQCIFYPF 635
           IN++SF K+ + L LPL+  C+FY F
Sbjct: 345 INFLSFRKKTNKLVLPLIFSCVFYLF 370


>UniRef50_Q9TVI2 Cluster: Putative uncharacterized protein plc-1; n=4;
            Caenorhabditis|Rep: Putative uncharacterized protein
            plc-1 - Caenorhabditis elegans
          Length = 1898

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 260  PALYKGKYLTCYLSKMSFRRVLSLNTKSIIRFSDLPIIVQ-KSHCRL 397
            P +Y G  L   +SK+ FR+V+ +  KS    SDLP+I+  ++HC L
Sbjct: 966  PLIYHGHTL---VSKIGFRQVVEIIKKSAFITSDLPVILSIENHCSL 1009


>UniRef50_Q9GUP2 Cluster: Enhancer of efl-1 mutant phenotype protein
            1; n=1; Caenorhabditis elegans|Rep: Enhancer of efl-1
            mutant phenotype protein 1 - Caenorhabditis elegans
          Length = 4177

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/54 (27%), Positives = 34/54 (62%)
 Frame = +2

Query: 203  YVNTD*FEYNRLLQRIRSKPALYKGKYLTCYLSKMSFRRVLSLNTKSIIRFSDL 364
            Y+N +  +Y + + R+ +K ++++ KYL CY ++  ++ +L+L     +R+ DL
Sbjct: 3901 YINPEHLDYFKFVGRLIAK-SVFEHKYLDCYFTRAFYKHILNLP----VRYQDL 3949


>UniRef50_Q61YX3 Cluster: Putative uncharacterized protein CBG03363;
            n=1; Caenorhabditis briggsae|Rep: Putative
            uncharacterized protein CBG03363 - Caenorhabditis
            briggsae
          Length = 4140

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/54 (27%), Positives = 34/54 (62%)
 Frame = +2

Query: 203  YVNTD*FEYNRLLQRIRSKPALYKGKYLTCYLSKMSFRRVLSLNTKSIIRFSDL 364
            Y+N +  +Y + + R+ +K ++++ KYL CY ++  ++ +L+L     +R+ DL
Sbjct: 3864 YINPEHLDYFKFVGRLIAK-SVFEHKYLDCYFTRAFYKHILNLP----VRYQDL 3912


>UniRef50_A0CAL5 Cluster: Chromosome undetermined scaffold_161,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_161,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1112

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 293 NRLSIYLYIMQVLTVFFEGDDYIQINLY*HINNIFLSKCTDCHL 162
           N +SI   I+Q+ T+F E   Y+QI LY HI+        DC +
Sbjct: 864 NLVSIGTAILQLQTIFIELQAYVQILLYEHIDEKSQISILDCEI 907


>UniRef50_A2FY68 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1063

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -1

Query: 228 YSNQSVLTYQ*HFFVQMHRLPPLIIDDSLMTFTMPFRLSRNVLSC**TLSITA*FVR*RF 49
           Y   S  TYQ HFFV    +P    DDS +  T  + + +++LS   T S T   +  +F
Sbjct: 482 YEIPSYYTYQIHFFVDPSSIPQYPSDDSGINSTFYYSILKSILSKLTTTSPTLSHLHPKF 541

Query: 48  S 46
           S
Sbjct: 542 S 542


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,495,227
Number of Sequences: 1657284
Number of extensions: 12647341
Number of successful extensions: 26464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26462
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)