Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0021.Seq
         (783 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PYW2 Cluster: Chromosome chr12 scaffold_38, whole gen...    36   1.5  
UniRef50_Q6CBI3 Cluster: Similar to tr|Q06593 Saccharomyces cere...    33   6.1  
UniRef50_P69834 Cluster: 2-C-methyl-D-erythritol 4-phosphate cyt...    33   8.1  

>UniRef50_A7PYW2 Cluster: Chromosome chr12 scaffold_38, whole genome
            shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
            chr12 scaffold_38, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 2144

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +1

Query: 73   NLIKSWYCCPLTF*NQNIIRTFLFMKGKIIKVSYNLRNTVTI--C**TLESFRINHQINK 246
            N +K W+C P+      ++  F+FMK + ++   +LR    I  C          H+I  
Sbjct: 1329 NKMKCWHCLPMEVMESGLVNNFIFMKWEFVRRRLSLRLLTGIGKCLGGRGEIHETHEIFL 1388

Query: 247  QSFVLLIINN 276
            QS  +LI  N
Sbjct: 1389 QSIFVLISRN 1398


>UniRef50_Q6CBI3 Cluster: Similar to tr|Q06593 Saccharomyces
            cerevisiae YPR194C; n=1; Yarrowia lipolytica|Rep: Similar
            to tr|Q06593 Saccharomyces cerevisiae YPR194C - Yarrowia
            lipolytica (Candida lipolytica)
          Length = 1032

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 305  GIIFSKIFINYILKFKSNQLLWFSITCRFDRLDFQ 409
            GI FS I I + +++K  +L W+  T  +D LDF+
Sbjct: 977  GIAFSAIIIFFAVQYKGVELEWWGNTVSYDNLDFK 1011


>UniRef50_P69834 Cluster: 2-C-methyl-D-erythritol 4-phosphate
           cytidylyltransferase, chloroplast precursor; n=5;
           Spermatophyta|Rep: 2-C-methyl-D-erythritol 4-phosphate
           cytidylyltransferase, chloroplast precursor -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 302

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 305 GIIFSKIFINYILKFKSNQLLWFSITCRFDRLDFQCKENKH-----LILMISC 448
           G I S  F+   LK K N  LWFS   +  +LDF  + N+      L+L I C
Sbjct: 9   GFITSPTFLCPKLKVKLNSYLWFSYRSQVQKLDFSKRVNRSYKRDALLLSIKC 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,500,971
Number of Sequences: 1657284
Number of extensions: 11622791
Number of successful extensions: 18126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18117
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)