Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0063.Seq
         (528 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CFA98 Cluster: hypothetical protein TTHERM_0044...    36   0.76 
UniRef50_Q8EL53 Cluster: Putative uncharacterized protein OB3378...    32   7.1  
UniRef50_Q6CTZ8 Cluster: Postreplication repair E3 ubiquitin-pro...    32   9.4  

>UniRef50_UPI00006CFA98 Cluster: hypothetical protein
           TTHERM_00442970; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00442970 - Tetrahymena
           thermophila SB210
          Length = 1231

 Score = 35.5 bits (78), Expect = 0.76
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 79  DINNHLKVNIKDS*VSHRTSLSKDSIKLSNRLRGSTRDN-NLXKLISYXK 225
           DI+NH K+N+K S  +H TS  K S +  N++  S +DN N  KLI   K
Sbjct: 308 DISNHTKINVKSSQDNH-TSQHKKSPQKDNKIHISDQDNDNPTKLIVLQK 356


>UniRef50_Q8EL53 Cluster: Putative uncharacterized protein OB3378;
            n=1; Oceanobacillus iheyensis|Rep: Putative
            uncharacterized protein OB3378 - Oceanobacillus iheyensis
          Length = 1232

 Score = 32.3 bits (70), Expect = 7.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 94   LKVNIKDS*VSHRTSLSKDSIKLSNRLRGSTRDNNLXKLISYXKFXXFSXTSLCFVR 264
            L VNI  + +S    ++   I + N+LR +  DN++  L+S  KF   S    CF+R
Sbjct: 863  LMVNIIRTYISRDYHVNLYPIPIINKLRSTIDDNDIVMLLSENKFYGQSYWIYCFLR 919


>UniRef50_Q6CTZ8 Cluster: Postreplication repair E3
           ubiquitin-protein ligase RAD18; n=1; Kluyveromyces
           lactis|Rep: Postreplication repair E3 ubiquitin-protein
           ligase RAD18 - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 427

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 88  NHLKVNIKDS*VSHRTSLSKDSIKLSNRLRGSTRDNNLXKLISYXKFXXF 237
           N LK  +      H T  S DS  ++N LRG+ R N +  +I   K   F
Sbjct: 319 NELKRRLSSWEAKHNTDHSSDSNSITNLLRGNKRTNAISAMIKLFKSDRF 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,824,037
Number of Sequences: 1657284
Number of extensions: 2461825
Number of successful extensions: 6938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6937
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)