Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0004
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.13 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.23 
UniRef50_Q26C21 Cluster: Hypothetical transmembrane protein; n=2...    34   3.7  
UniRef50_Q6BI28 Cluster: Similar to CA6143|IPF1873 Candida albic...    33   4.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.7 bits (86), Expect = 0.13
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = -3

Query: 231 HRHSPLIFSPDVLSGSRLRSGGRFCEALHL---LGSVLAPL 118
           HR  PL FSPD+LSGSR R+G  + E L L    G++++PL
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY-EMLGLGTIAGNIVSPL 431


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 23/42 (54%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 219 PLIFSPDVLSGSRLRSGGRFCEALHLLGSVLA-PLRFEAREL 97
           P+ F       SR RS GRFCEAL LLG VLA  LR    EL
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_Q26C21 Cluster: Hypothetical transmembrane protein; n=2;
           Flavobacteria|Rep: Hypothetical transmembrane protein -
           Flavobacteria bacterium BBFL7
          Length = 280

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 444 EFHKVRFIKSSTILTFPYKVLMFILNRTKLVYV 542
           EFHK ++ KSS ILT  Y V++ +L  T L+ V
Sbjct: 8   EFHKFKYSKSSKILTIIYLVIVILLMFTGLIQV 40


>UniRef50_Q6BI28 Cluster: Similar to CA6143|IPF1873 Candida albicans
           IPF1873; n=1; Debaryomyces hansenii|Rep: Similar to
           CA6143|IPF1873 Candida albicans IPF1873 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 273

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 478 VEDFINRTLWNSSRCYKALITHHE*TTGQYISSKKVMFIKF*NEL*TYDIFSLTAFAEMH 299
           +E+ + +T+W  SR Y   I     T   Y+SS+K         +  Y +    +FAE+ 
Sbjct: 47  IEELLTKTVWRGSRSYDISILGGSATQEYYLSSRKQQIRNTTALIFAYSVADRQSFAELE 106

Query: 298 SYFK 287
             F+
Sbjct: 107 DLFE 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,915,743
Number of Sequences: 1657284
Number of extensions: 10523032
Number of successful extensions: 17016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17015
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)