Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.015
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.11 
UniRef50_A2DZG9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.24 
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    33   1.7  
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    31   4.0  
UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1; ...    31   5.3  
UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep: Zgc:1...    31   6.9  
UniRef50_UPI0000D5762A Cluster: PREDICTED: similar to CG6040-PA;...    30   9.2  
UniRef50_Q8Y2J4 Cluster: Probable signal peptide protein; n=13; ...    30   9.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.5 bits (88), Expect = 0.015
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = -2

Query: 345 LRLVDDLTAHLVLNGYWSP 289
           LR VD+LTAHLVL+GYWSP
Sbjct: 157 LRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -2

Query: 159 WYLPARTHKRSYHQ 118
           WYLPARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A2DZG9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1648

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = -1

Query: 337 GGRSHSPPGVKWLLEPIDIRT*MRHPS*DISLRSQYSYNGYPTLQTETHYCFTAEIGRAV 158
           GGR   PP +K +  PI IRT          LR+ Y Y  Y T+     Y F    G A+
Sbjct: 516 GGRISQPPSLKSVTHPISIRT----------LRATYLYEAYSTMDLPPFYAFRVGFGAAL 565

Query: 157 VPTRADSQEVLPPVITQIVILRV*LLLHDVI 65
                D      P ++  ++  +  L+H V+
Sbjct: 566 AYIDVD------PYVSCSIMFELVYLVHKVM 590


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 206 SNRNALLLHGRNRQGGGTYPRGL 138
           + RNALL+HG N  G  TY RGL
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGL 134


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -3

Query: 227 LQRLPHPSNRNALLLHGRNRQGGGTYPRGLTRG 129
           L  LP P  R A    G  R GGGT P G +RG
Sbjct: 189 LDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


>UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1;
           Bradyrhizobium sp. BTAi1|Rep: Putative uncharacterized
           protein - Bradyrhizobium sp. (strain BTAi1 / ATCC
           BAA-1182)
          Length = 164

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 YHRPAYFCREAVMRFGLKGGV 217
           Y R AYF  EAV RFG +GG+
Sbjct: 37  YRRRAYFDYEAVTRFGARGGI 57


>UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep:
           Zgc:153909 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 262

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 221 RLPHPSNRNALL-LHGRNRQGGGTYPRGLTRGPTTSDYAN 105
           RL HP  R  ++ LHG+ R GGG   RG+ +G  T    N
Sbjct: 92  RLGHPVGRGGMMGLHGQMR-GGGRSRRGMVKGFCTKKSVN 130


>UniRef50_UPI0000D5762A Cluster: PREDICTED: similar to CG6040-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6040-PA - Tribolium castaneum
          Length = 1048

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 265 HP--S*DISLRSQYSYNGYPTLQTETHYCFTAEIGRAVVPTR 146
           HP  S D+ ++ +    G PT +TET Y    E+  A+VP +
Sbjct: 537 HPPKSVDVLIKQKQYSGGVPTKKTETVYANIGEVRSAIVPNK 578


>UniRef50_Q8Y2J4 Cluster: Probable signal peptide protein; n=13;
           Burkholderiales|Rep: Probable signal peptide protein -
           Ralstonia solanacearum (Pseudomonas solanacearum)
          Length = 268

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 158 GTYPRGLTRGPTTSDYANCNFAGLTF 81
           G+YP G TR  TT  YA   +  +TF
Sbjct: 136 GSYPEGFTRPHTTEGYAQIGYGPVTF 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,492,834
Number of Sequences: 1657284
Number of extensions: 7316156
Number of successful extensions: 14477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14473
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)