Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30048
         (303 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5BW69 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q11T05 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  
UniRef50_A0EEK9 Cluster: Chromosome undetermined scaffold_91, wh...    30   8.8  

>UniRef50_A5BW69 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 198

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 268 WNNSSASLYYSWRESVNFSTMLKFTRLYADHN 173
           W+N  A+L Y W E+   S ML   + +A H+
Sbjct: 73  WHNIQANLAYKWTETEYVSQMLTMIKRFAQHH 104


>UniRef50_Q11T05 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 1150

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -3

Query: 247 LYYSWRESVNFSTMLKFTRLYADHNMNFLFLYRYL 143
           L Y+  ++V+F++ +KF+    DH +NF+  YRYL
Sbjct: 735 LPYTKAQTVSFTSGIKFS---LDHQLNFVTTYRYL 766


>UniRef50_A0EEK9 Cluster: Chromosome undetermined scaffold_91, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_91,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 478

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 47  NAFVVDYITIVIVGRRDLQTEVLLYNIYFFTK 142
           N FV DY+ I ++G RDLQ      NI+F +K
Sbjct: 155 NGFVRDYLKIKLIGNRDLQR---FLNIHFTSK 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,993,631
Number of Sequences: 1657284
Number of extensions: 4188984
Number of successful extensions: 7817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7814
length of database: 575,637,011
effective HSP length: 77
effective length of database: 448,026,143
effective search space used: 10304601289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)