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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30018
         (894 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su...   421   e-117
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s...   354   2e-96
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ...   332   5e-90
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri...   297   3e-79
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su...   265   1e-69
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s...   257   2e-67
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ...   250   5e-65
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2...   233   6e-60
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp...   224   3e-57
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ...   221   2e-56
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A...   219   6e-56
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui...   219   1e-55
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O...   215   2e-54
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n...   214   3e-54
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B...   210   5e-53
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul...   209   6e-53
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F...   207   3e-52
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy...   205   1e-51
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther...   200   3e-50
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ...   200   3e-50
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s...   198   2e-49
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy...   197   3e-49
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact...   196   5e-49
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd...   196   6e-49
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,...   196   6e-49
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n...   196   8e-49
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine...   193   4e-48
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c...   192   1e-47
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido...   191   2e-47
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ...   191   2e-47
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale...   188   1e-46
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase...   184   3e-45
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro...   180   3e-44
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D...   179   1e-43
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4...   175   1e-42
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;...   172   9e-42
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac...   171   2e-41
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ...   170   5e-41
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n...   168   1e-40
UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s...   167   3e-40
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B...   166   8e-40
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac...   162   9e-39
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ...   157   5e-37
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;...   155   1e-36
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit...   149   1e-34
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put...   141   2e-32
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu...   136   5e-31
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;...   136   7e-31
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;...   136   7e-31
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n...   134   3e-30
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf...   134   3e-30
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s...   131   3e-29
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ...   130   6e-29
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe...   130   6e-29
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4...   127   4e-28
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult...   125   2e-27
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4...   124   2e-27
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n...   112   1e-23
UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9; Eu...   112   1e-23
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su...   111   3e-23
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ...   108   2e-22
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;...   103   8e-21
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=...   101   2e-20
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    99   8e-20
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs...    97   4e-19
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi...    97   4e-19
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;...    96   1e-18
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative...    95   2e-18
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    94   4e-18
UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3; Methanomicrobi...    94   5e-18
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa...    93   9e-18
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs...    93   9e-18
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa...    93   1e-17
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h...    91   3e-17
UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=...    89   2e-16
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein...    87   8e-16
UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1; Propi...    86   1e-15
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter...    85   2e-15
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh...    83   1e-14
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog...    82   2e-14
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D...    76   1e-12
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa...    76   1e-12
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3...    75   2e-12
UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1; G...    75   3e-12
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce...    73   8e-12
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10...    73   1e-11
UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6; Me...    73   1e-11
UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus...    72   2e-11
UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n...    71   4e-11
UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4; Methanom...    69   1e-10
UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4; Methano...    69   1e-10
UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11; Alphaproteobacte...    67   5e-10
UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    65   3e-09
UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    64   5e-09
UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei ...    63   1e-08
UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH dehyd...    61   3e-08
UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus...    59   2e-07
UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-lik...    57   5e-07
UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate hydrog...    57   5e-07
UniRef50_Q6APF2 Cluster: Related to hydrogenase, component E-for...    57   7e-07
UniRef50_Q5P2H0 Cluster: Subunit of formate hydrogenlyase-like m...    56   9e-07
UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=...    54   4e-06
UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4; Leptosp...    54   6e-06
UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    52   2e-05
UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain 49...    51   5e-05
UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    50   6e-05
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ...    43   0.009
UniRef50_Q97ZA7 Cluster: Formate hydrogenlyase subunit 5; n=2; S...    43   0.012
UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE; ...    42   0.016
UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit, ...    41   0.049
UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;...    41   0.049
UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1; T...    40   0.11 
UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=...    38   0.26 
UniRef50_UPI000038DF6E Cluster: hypothetical protein Faci_030016...    38   0.35 
UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5; Bacteri...    38   0.46 
UniRef50_Q6L0U1 Cluster: Formate hydrogenlyase subunit 5; n=1; P...    37   0.80 
UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large sub...    36   1.1  
UniRef50_A6DBU3 Cluster: Nickel-dependent hydrogenase, large sub...    35   2.4  
UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large sub...    35   2.4  
UniRef50_UPI000155602C Cluster: PREDICTED: similar to pericentri...    34   4.3  
UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2; ...    33   7.4  
UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4; Pyrobac...    33   7.4  
UniRef50_A3H5B9 Cluster: Endonuclease V; n=1; Caldivirga maquili...    33   7.4  
UniRef50_Q9H7P9 Cluster: Pleckstrin homology domain-containing f...    33   9.8  

>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 2, mitochondrial precursor; n=305;
           cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 2, mitochondrial precursor - Homo
           sapiens (Human)
          Length = 463

 Score =  421 bits (1038), Expect = e-117
 Identities = 196/267 (73%), Positives = 221/267 (82%)
 Frame = +3

Query: 93  VNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQ 272
           +   R   +W PD ++ +QF G VMYP + T   KP P+N +  P +  V+N+ LNFGPQ
Sbjct: 28  IQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQ 87

Query: 273 HPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCN 452
           HPAAHGVLRLV+EL GE VR  DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCN
Sbjct: 88  HPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCN 147

Query: 453 EQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEER 632
           EQ YSLAVEKLLNI  P RA++IR LF EITRLLNHIMAV THALD+GA+TPFFWLFEER
Sbjct: 148 EQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEER 207

Query: 633 EKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRI 812
           EKM EFYERVSGARMHAAYIRPGGV  D+PLGLMDDIY+FS  F+ R+DE+E++LT NRI
Sbjct: 208 EKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRI 267

Query: 813 WVQRTKDIGVVTAQDALNYGFSGVMLR 893
           W  RT DIGVVTA++ALNYGFSGVMLR
Sbjct: 268 WRNRTIDIGVVTAEEALNYGFSGVMLR 294


>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
           subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
           oxidoreductase 49 kDa subunit - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 394

 Score =  354 bits (870), Expect = 2e-96
 Identities = 162/221 (73%), Positives = 190/221 (85%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           +++++N  LNFGPQHPAAHGVLRLVLE++GE V  A+PHIGLLHRGTEKLIEYKTY QAL
Sbjct: 5   KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
           PYFDR DYVSMM  E  YSLAVEKLLN +VPLRA+YIR LF EITR+LNH++A+ THA+D
Sbjct: 65  PYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           VGALTPF W FEEREK++EFYERVSGARMHA++IRPGGV+ D+PLGL  DI  F+ +FA 
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           RIDE+E++LT NRIW QR  DIG VTAQ A ++GFSGVMLR
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLR 225


>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 498

 Score =  332 bits (817), Expect = 5e-90
 Identities = 160/247 (64%), Positives = 193/247 (78%), Gaps = 26/247 (10%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAAD----------------------- 341
           ++ +R+  +NFGPQHPAAHGVLRL+LEL+GE +   D                       
Sbjct: 83  DRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVC 142

Query: 342 ---PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRA 512
              PH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNI+VP RA
Sbjct: 143 ILQPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERA 202

Query: 513 KYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 692
           K+IRT+F EITR+LNH MAV +H +DVG LTPF W FEEREK+MEFYERVSGAR+HAAY+
Sbjct: 203 KWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYV 262

Query: 693 RPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYG 872
           RPGGV+ D+P GL+DDI++++++F  R+DE+E+V+T NRIW  RT  IG VTAQ+AL+YG
Sbjct: 263 RPGGVAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYG 322

Query: 873 FSGVMLR 893
           FSGVMLR
Sbjct: 323 FSGVMLR 329


>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
           extorquens PA1|Rep: NADH dehydrogenase -
           Methylobacterium extorquens PA1
          Length = 447

 Score =  297 bits (728), Expect = 3e-79
 Identities = 138/221 (62%), Positives = 170/221 (76%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           E  +RN  +NFGPQHPAAHGVLRLVLELDGE V   DPHIGLLHRGTEKLIE+KTY QA 
Sbjct: 24  EHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAT 83

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
           PYFDRLDYV+ M  E  + LA+E+L  I+VP RA+ IRTLF EI RLL+H++ V T A+D
Sbjct: 84  PYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMD 143

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           VGALTP  W FEEREK+M FYER SGAR+HA Y RPGGV  D+P  L+DDI  F   F +
Sbjct: 144 VGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPFLK 203

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            +D++++++  NRI+ QR  DIG+V+  +A+ +GFSGVM+R
Sbjct: 204 VVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVR 244


>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
           subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
           oxidoreductase, NQO4 subunit - Xylella fastidiosa
          Length = 435

 Score =  265 bits (649), Expect = 1e-69
 Identities = 138/261 (52%), Positives = 171/261 (65%), Gaps = 27/261 (10%)
 Frame = +3

Query: 192 LKPVPYNSIIKPAEKK--VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHR 365
           ++  P  S     E K  +RN  +NFGPQHPAAHGVLRL+LE+DGETV  ADPHIGLLHR
Sbjct: 4   IRQAPATSASNATESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHR 63

Query: 366 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEIT 545
           GTEKL E K + Q++ Y DRLDYVSMMCNE  Y  A+E L+ I  P RA+YIRT+F EIT
Sbjct: 64  GTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEIT 123

Query: 546 RLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP- 722
           R+LNH+M +G++ALD+GA+    + F ERE++M+ YE +SGARMHAAY RPGGV  D+P 
Sbjct: 124 RILNHLMWLGSNALDLGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPD 183

Query: 723 -----------------------LGLMDDIYE-FSSKFAERIDEVEDVLTTNRIWVQRTK 830
                                   G M D  E F+  F +RIDE E +LT NRIW QRT 
Sbjct: 184 TMPKYKQSRWHKGKALKRLNAAREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTV 243

Query: 831 DIGVVTAQDALNYGFSGVMLR 893
            +GV+    A  +G +GVMLR
Sbjct: 244 GVGVIEPDVAKAWGMTGVMLR 264


>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
           subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
           oxidoreductase 49 kDa subunit - Paramecium tetraurelia
          Length = 400

 Score =  257 bits (630), Expect = 2e-67
 Identities = 118/220 (53%), Positives = 163/220 (74%), Gaps = 2/220 (0%)
 Frame = +3

Query: 240 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 419
           ++ + +NFGPQHPAAHGVLRL+L+L+GE V   D HIGLLHRG+EKL+E K Y Q++PYF
Sbjct: 1   MKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF 60

Query: 420 DRLDYVSMMCNEQCYSLAVEKLLN-IDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
           DRLDYVSMM  E  Y LA+E LLN  +       +RT+F E+TR+LNH++A+  HALD+G
Sbjct: 61  DRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIG 120

Query: 597 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLD-MPLGLMDDIYEFSSKFAER 773
           +++  FW FEEREK+MEFYERV G RMHAA+ RP  V+L+ + + L+ DI EF++     
Sbjct: 121 SMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTT 180

Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           + E+ ++LT N+IW QR  +IG ++ +D L++G +GVM R
Sbjct: 181 LSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMAR 220


>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
           n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
           subunit 7 - Leptospirillum sp. Group II UBA
          Length = 423

 Score =  250 bits (611), Expect = 5e-65
 Identities = 110/214 (51%), Positives = 154/214 (71%)
 Frame = +3

Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
           +LN GPQHP+ HGVLR++LELDGE ++ + P +G LHRGTEK+ EY+TY Q +P  DRLD
Sbjct: 41  LLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPLTDRLD 100

Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
           YVS M N   +   VEKLL + VP RA+++RT+ AE+ R++NH+  +GT ALD+GA++ F
Sbjct: 101 YVSAMANNYAFVRTVEKLLQLKVPDRAEFVRTIVAEVQRIVNHLFWLGTQALDIGAMSVF 160

Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
           F+ F ERE++++ +E + GAR+   Y R GGV  DMP  ++D +Y+F   F E I E   
Sbjct: 161 FYTFREREELLDIFEILCGARLTTNYYRVGGVESDMPQHVIDRLYKFVETFEEHIQEYNT 220

Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +L TNRIW+ RTK+I V+T +DA+N+G SG  LR
Sbjct: 221 LLETNRIWLARTKNIAVITGEDAINFGLSGPTLR 254


>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
           n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
           2 - Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 404

 Score =  233 bits (569), Expect = 6e-60
 Identities = 107/217 (49%), Positives = 146/217 (67%)
 Frame = +3

Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
           + ++LN GPQHP+ HGVLRLVL+LDGE V   DPHIG LHRGTEKL E  TYTQ  P  D
Sbjct: 18  KEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTD 77

Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
           RLDY+    N   ++LAVEKLL I+ P+RA+YIR + AE+ R+  H++  G   +D+GA+
Sbjct: 78  RLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAM 137

Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
           T   +   ERE +M+  E ++GARMH +Y R GGV  D+P G +  I EF   F  RI +
Sbjct: 138 TALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFPNRIRD 197

Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            E ++  NR+++ RT+ +GV++A DA++ G SG  LR
Sbjct: 198 YERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLR 234


>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
           PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
          Length = 405

 Score =  224 bits (547), Expect = 3e-57
 Identities = 103/217 (47%), Positives = 145/217 (66%)
 Frame = +3

Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
           R +++N GPQHP+ HGVLRL+L++DGE V+  +PHIGLLHRGTEKL E  TYTQ  P  D
Sbjct: 18  REVLMNLGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLTD 77

Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
           RLDY+    N   Y+LAVE LL I  P RA+YIR L AE++R+  H++  G   +DVGA+
Sbjct: 78  RLDYLCQPSNNLGYALAVEALLGIKAPERAQYIRVLMAELSRISGHLLITGALPMDVGAI 137

Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
           T   +   +RE +M+  E +SGARMH ++ R GGV  D+P G ++ I EF   F   I +
Sbjct: 138 TTLLYTMRDREMIMDLMEMISGARMHTSFCRVGGVREDLPDGCVERIIEFCDIFENSISD 197

Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            E+++  NR+++ R +++G +T +DA+  G SG  LR
Sbjct: 198 YENLVGNNRVFLARVENVGNITGEDAIALGLSGPCLR 234


>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
           n=24; Epsilonproteobacteria|Rep: NADH-quinone
           oxidoreductase subunit D - Campylobacter jejuni
          Length = 408

 Score =  221 bits (540), Expect = 2e-56
 Identities = 105/234 (44%), Positives = 152/234 (64%)
 Frame = +3

Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
           LKP   N   +  + K   MI+N GPQHP+AHG LRL+LELDGE V  A P IG +HRG 
Sbjct: 7   LKPYYENIAFEQEDSK---MIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGM 63

Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
           EK+ E   Y + +P  DR+DY++   N   Y  AVEKL  +++P RA  IR +  E+ R+
Sbjct: 64  EKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRI 123

Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
            +H++ + THALD+GA++ F + F ERE +++  E+  GAR+  + +R GGV LD+P   
Sbjct: 124 TSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENY 183

Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++++  F  KF   + + ED+L  NRIW  RT+++GVVT + ALN+G +GVMLR
Sbjct: 184 LEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLR 237


>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
           Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
           Acidobacteria bacterium (strain Ellin345)
          Length = 381

 Score =  219 bits (536), Expect = 6e-56
 Identities = 100/215 (46%), Positives = 144/215 (66%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           ++LN GPQHP+ HGVLR++L+LDGE V   +  IG LHRG EK+ E +TY Q  PY DR+
Sbjct: 23  LVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRM 82

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
           DYV+ + N   Y  AVEKL+++  P RA+++R +  E+ RL +H++ +GTHALD+GALTP
Sbjct: 83  DYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDIGALTP 142

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
            F+ F +RE++++ +E+  GAR+     R GG   +   G   D+ ++  K   RIDE E
Sbjct: 143 LFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPRIDEYE 202

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            +LT NRIW+QRTK IG++ A D    G +G +LR
Sbjct: 203 GLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLR 237


>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
           aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
           aeolicus
          Length = 593

 Score =  219 bits (534), Expect = 1e-55
 Identities = 97/222 (43%), Positives = 155/222 (69%), Gaps = 2/222 (0%)
 Frame = +3

Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
           KK   ++LN+GP HP  HG +  + +L+GE +   D  +G LHRG EKL E++ Y Q L 
Sbjct: 214 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLV 273

Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNID--VPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
           Y DR+DY+S +C+ Q + +A+E+L+ I   VP +AKYIRT+ +E+ R+ +H++ +GT+AL
Sbjct: 274 YTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYAL 333

Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFA 767
           D+GALT F + F+EREK+M+  E ++GAR+  +Y R GGV +D+P G ++ I  F  KF 
Sbjct: 334 DLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLPEGALEVIKAFIKKFP 393

Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           E + + E +LT NRIW++R K++G+++ +DA  +G +G ++R
Sbjct: 394 EELKDWETILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIR 435


>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
           Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
           subunit - Opitutaceae bacterium TAV2
          Length = 419

 Score =  215 bits (524), Expect = 2e-54
 Identities = 99/243 (40%), Positives = 155/243 (63%), Gaps = 1/243 (0%)
 Frame = +3

Query: 168 YPDESTKSLKPVPYNSIIKP-AEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 344
           +PD + ++      + + +  A      M ++ GP HP+ HGVLRL LELDGE V   DP
Sbjct: 7   FPDAAARTTAHAAGDPLFQTIAASDDEKMSISMGPSHPSTHGVLRLQLELDGEIVTKCDP 66

Query: 345 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 524
            IG LHRG EK+ E  TY Q +PY DRLDY++ + N   Y++AVE+L  ++VP R + IR
Sbjct: 67  VIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNVAYAIAVERLAGLEVPARCQAIR 126

Query: 525 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGG 704
            + AE+ R+ +H++  G+ A+D G+ T F + F EREK+ + +E ++GAR   +Y R GG
Sbjct: 127 VIVAELARISSHLLGFGSFAMDTGSWTAFMYQFNEREKLYKLFEELTGARFTTSYTRIGG 186

Query: 705 VSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGV 884
           ++ D+P G +  +  F  +F   ++E+  +LT NRI++ RT+ +GV++ +DAL+YG +G 
Sbjct: 187 LARDVPEGWIQRVDAFCDQFLPLLEEMLGLLTRNRIFIDRTEGVGVISREDALSYGLTGP 246

Query: 885 MLR 893
            LR
Sbjct: 247 NLR 249


>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
           n=12; Bacteroidetes/Chlorobi group|Rep: NADH
           dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
          Length = 368

 Score =  214 bits (522), Expect = 3e-54
 Identities = 101/215 (46%), Positives = 145/215 (67%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           M+L+ GPQHP+ HGVLRL    DGE V  A+P++G LHR  EK  E   Y   +PY DR+
Sbjct: 1   MVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRM 60

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
           DY++ M NE  Y + VEKLL+I++P R ++IR + AE+ R+ +H++A+GT+A+D+GA TP
Sbjct: 61  DYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAIDLGAFTP 120

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
           F + F +RE +M   E +SGARM   YI  GG++ D+P      + EF + F  +  E+ 
Sbjct: 121 FLFCFRDREHIMSLLEWISGARMLYNYIWIGGLAYDVPADFKTRVAEFVTYFRPKAKELY 180

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            +LT N I+V+RT DIG++ A  A+NYG+SG MLR
Sbjct: 181 QLLTENEIFVKRTYDIGIMPADVAINYGWSGPMLR 215


>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
           Bacteria|Rep: NADH dehydrogenase I, D subunit -
           Salinibacter ruber (strain DSM 13855)
          Length = 451

 Score =  210 bits (512), Expect = 5e-53
 Identities = 103/232 (44%), Positives = 148/232 (63%)
 Frame = +3

Query: 198 PVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEK 377
           P    S + P E +   MILN GPQHPA HGVLR V+++DGET+  +   IG LHRG EK
Sbjct: 53  PATQRSEVDPLENE---MILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEK 109

Query: 378 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 557
           L E+KTY + +PY DR+DY+S   N   + LAVEKL +I+VP RA++IR + +E+ R+ +
Sbjct: 110 LAEHKTYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISS 169

Query: 558 HIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMD 737
           H + +G   +D GA++ F W F+ERE++    + V+GAR   ++ R GGV+ D     ++
Sbjct: 170 HCLWLGVGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVANDFSPRAIE 229

Query: 738 DIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            I +F   F +RI   E +L  NRIWV+R K +G VT ++AL  G +G  LR
Sbjct: 230 MIRDFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLR 281


>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
           marina DSM 3645|Rep: NADH dehydrogenase -
           Blastopirellula marina DSM 3645
          Length = 418

 Score =  209 bits (511), Expect = 6e-53
 Identities = 97/234 (41%), Positives = 157/234 (67%)
 Frame = +3

Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
           ++  P + I++  + +   M++N GPQHP+ HGVLRLVL  DGE V  A PHIG LHR  
Sbjct: 18  MEMAPTSGIVE-IDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCA 76

Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
           EK+ E  T  Q +PY DR+DY++ M     ++LAVEKL++ D+P +A+++R + AE+ R+
Sbjct: 77  EKIGENLTPRQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRI 136

Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
            +H++ +GT+ LD+G+ +PF + F ERE++++  E   GAR+  +Y+ PGG + D+P G 
Sbjct: 137 ASHLVGMGTYGLDLGSFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGW 196

Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  +  F  +F   I +   +LT N I+++RT +IGV++A+ A++YG SG +LR
Sbjct: 197 LQKLTGFLDQFEPVILDYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLR 250


>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
           Firmicutes|Rep: NADH dehydrogenase I subunit D -
           Symbiobacterium thermophilum
          Length = 384

 Score =  207 bits (506), Expect = 3e-52
 Identities = 106/234 (45%), Positives = 156/234 (66%), Gaps = 14/234 (5%)
 Frame = +3

Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
           ++ + +++N GPQHP+ HGVLRL+++LDGE V   +P IG LHR  EKL E KTY Q +P
Sbjct: 4   ERTQELLVNMGPQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQVIP 63

Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLN--IDVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
           + DR DY++ M NE CY  AVEKL    I VP RA+YIR + AE+ R+ +H++A+G+ A+
Sbjct: 64  FTDRTDYLAAMLNELCYVEAVEKLFGDAIQVPERAQYIRVMLAELQRITSHLLALGSMAM 123

Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLM------DD--- 740
           D+GA TPF + + +REK+   +ER++G RM   Y+R GGV  D+P G++      +D   
Sbjct: 124 DLGATTPFLYCWRDREKLYSLFERITGGRMLYNYLRIGGVRNDLPEGILGTPQDGEDKAD 183

Query: 741 --IYEFSSKFAERI-DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
             I+ F + F   +  E + ++T NRI+  RTK+IGV+TA+ A+ Y  SG +LR
Sbjct: 184 KTIWGFINYFDSYVYPEWKALVTGNRIFQYRTKNIGVLTAEQAIAYSCSGAVLR 237


>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
           xylanophilus DSM 9941|Rep: NADH dehydrogenase -
           Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
          Length = 358

 Score =  205 bits (500), Expect = 1e-51
 Identities = 97/214 (45%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           +N GPQHPA HG+LRL+LELDGET+   DP +G LHR  EK+ E +TY   +P  DRLDY
Sbjct: 1   MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDY 60

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
            + M NE  Y LAVE LL +++P RA+YIR L  E+ R+ +H+ ++G   L++GA TP  
Sbjct: 61  FANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPIL 120

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI-DEVED 791
           + F ERE++  F+E V+GARM   YIR GGV  D+P  + + I+E+     +RI  +  D
Sbjct: 121 YAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFID 180

Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++  N I+++RT+ I  +T ++A+  G +G  LR
Sbjct: 181 LIEGNEIFIERTRGISRLTQEEAIELGLTGPPLR 214


>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
           Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
           Thermoplasma volcanium
          Length = 369

 Score =  200 bits (489), Expect = 3e-50
 Identities = 92/213 (43%), Positives = 144/213 (67%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           +NFGPQHP+ HGVLRL ++LDGE V+  +P IG LHR  EK+ E + Y   + YFDR+DY
Sbjct: 9   VNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDY 68

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           V+ M  E  Y  A EKLL+++ P RAK+IR +  E+ R+ +H++ +G   LD+G LTPFF
Sbjct: 69  VAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPFF 128

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           + F+EREK+++ +  VSG+R    Y+  GGV  D+    +D I +F ++F + ++ + ++
Sbjct: 129 YCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIANL 188

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
              N I++ RTK +G+++ + A++YG +G MLR
Sbjct: 189 FVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLR 221


>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
           n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
           4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
           579)
          Length = 409

 Score =  200 bits (489), Expect = 3e-50
 Identities = 99/235 (42%), Positives = 148/235 (62%), Gaps = 1/235 (0%)
 Frame = +3

Query: 192 LKPVPYNSIIKPA-EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRG 368
           L+ +P ++  + A E +   M LN GPQHP+ HGVLRL++ L GE V    PHIG LH G
Sbjct: 6   LEEIPLDAPPEEAKELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTG 65

Query: 369 TEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITR 548
            EK +E++TY Q + Y  R+DY+    ++  Y+LAVEKLL   VP RA+ IR +  E++R
Sbjct: 66  FEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSR 125

Query: 549 LLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLG 728
           L +H++ +GT  LD+GALTPFF+ F ERE +++ +E V+G R H  YIR GGV  D+P  
Sbjct: 126 LASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEE 185

Query: 729 LMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            + ++ +       RIDE E +   + I+ +R + +GV+  + A++ G +G  LR
Sbjct: 186 FVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLR 240


>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
           subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
           oxidoreductase 49 kDa subunit - Nyctotherus ovalis
          Length = 412

 Score =  198 bits (483), Expect = 2e-49
 Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
 Frame = +3

Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
           + R +ILNFGPQHPA+HGVLRLV+ + GE V   DPHIG LHRGTE+L+E  +Y  A  +
Sbjct: 23  RFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVF 82

Query: 417 FDRLDYVSMMCNEQCYSLAVEK-LLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 593
            DRLDY +++     Y LAVE+ L    + +R + +RT+F E++R+LNH++++ THALD+
Sbjct: 83  MDRLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDI 142

Query: 594 GALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL--GLMDDIYEFSSKFA 767
           G +   FW FE+RE++ME YE +SGARMH A   P   +LD  L   L+  I  FS    
Sbjct: 143 GTMAMLFWAFEDRERIMELYEYISGARMHTALYYP-NQTLDHILTNELLAKILIFSRNSE 201

Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +   E+   L  NR+W  R   IGVV+ + + +   SG + R
Sbjct: 202 KTYTEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVAR 243


>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
           Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
           subunit D - Symbiobacterium thermophilum
          Length = 404

 Score =  197 bits (481), Expect = 3e-49
 Identities = 94/224 (41%), Positives = 142/224 (63%), Gaps = 3/224 (1%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           E++   M L+ GP HPA HGVLR+ LEL+GETV  A+P  G LH G EK  E+ T+ QA 
Sbjct: 11  EQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQAT 70

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNID--VPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
              DR+DY+S + N   Y +AVEKLL I+  +P +A+  R +  E+ R+ +H++ +GT  
Sbjct: 71  TVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGTGG 130

Query: 585 LDVGAL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSK 761
           LD G + TP FW FE R+++++ +E  +G RM+ +Y+R GG++ D+P    + + +F   
Sbjct: 131 LDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKV 190

Query: 762 FAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
              RI E++DV+  N I+V R K + V+T + AL YG +G  LR
Sbjct: 191 APGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLR 234


>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
           Anaeromyxobacter|Rep: NADH dehydrogenase -
           Anaeromyxobacter sp. Fw109-5
          Length = 381

 Score =  196 bits (479), Expect = 5e-49
 Identities = 87/226 (38%), Positives = 144/226 (63%)
 Frame = +3

Query: 216 IIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 395
           I++  ++    M+LNFGPQHP+ HGV+  ++E DGE ++ A P +G LHR  EK+ E   
Sbjct: 5   ILRRVDRNNEEMVLNFGPQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTG 64

Query: 396 YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVG 575
           Y   +P+ DR+DYV+ M   + Y++AVEKLL ++VP RA+++R +  E+ R+ +H++AVG
Sbjct: 65  YPGFMPFTDRIDYVAAMFANEGYAIAVEKLLKVEVPPRAQWLRAISGELVRIASHLIAVG 124

Query: 576 THALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFS 755
           T  +D+GA TP      ERE++ ++ E + GAR+   Y R GGV+ D+P G  D +  F 
Sbjct: 125 TMTMDIGAFTPMVHGLREREEINDYIEALCGARLTYNYHRIGGVAFDLPEGWRDKVLAFL 184

Query: 756 SKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            +F + + E + ++T N I+ +R  ++  ++ + A++YG  G  LR
Sbjct: 185 DRFDKFLPEFDRLITFNEIYKKRLANVATISREQAISYGLVGPNLR 230


>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
           Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
           subunit - Bdellovibrio bacteriovorus
          Length = 560

 Score =  196 bits (478), Expect = 6e-49
 Identities = 89/213 (41%), Positives = 142/213 (66%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           LN GP H A HG LR++ E+DGET+   +  IG LHR  EK+ E   Y Q +PY DRL+Y
Sbjct: 179 LNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNY 238

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
            S   N   Y  AVE+LL +++P +A+ +R + AE++R+++H +A+GT A+D+GALT FF
Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFF 298

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           ++F  REK+   +E++ GAR+  +  R GG++ D P G  D++     +  +  DE+ ++
Sbjct: 299 YMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDEMANM 358

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  N+I++QRTK++  V+A DA+ +G++G MLR
Sbjct: 359 VIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLR 391


>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
           chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
           H); n=129; cellular organisms|Rep: NAD(P)H-quinone
           oxidoreductase chain H, chloroplast (EC 1.6.5.-)
           (NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 393

 Score =  196 bits (478), Expect = 6e-49
 Identities = 89/215 (41%), Positives = 136/215 (63%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           MI+N GP HP+ HGVLRL++ LDGE V   +P +G LHRG EK+ E +   Q LPY  R 
Sbjct: 11  MIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRW 70

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
           DY++ M  E       E+L NI VP RA YIR +  E++R+ +H++ +G    D+GA TP
Sbjct: 71  DYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTP 130

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
           FF++F ERE + + +E  +G RM   + R GG++ D+P G +D   +F   F   + E +
Sbjct: 131 FFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVEYQ 190

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            ++T N I+++R + +G++  ++A+N+G SG MLR
Sbjct: 191 KLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLR 225


>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=32;
            Proteobacteria|Rep: NADH dehydrogenase I, B/C/D subunits
            - Geobacter sulfurreducens
          Length = 792

 Score =  196 bits (477), Expect = 8e-49
 Identities = 95/215 (44%), Positives = 136/215 (63%)
 Frame = +3

Query: 249  MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
            +ILN GPQHP  HG++R VL+LDGE +   D  IG  HRG EK+ E + + Q +PY DR+
Sbjct: 409  LILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRI 468

Query: 429  DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
            DY++ + N   Y  +VE+L  I VP R   IR + AE+ R+ NH++ +GT A DVGA+TP
Sbjct: 469  DYLAGVQNNLAYVNSVERLCGITVPDRGIAIRVMLAELFRIANHLVWLGTFAADVGAMTP 528

Query: 609  FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
             F+ F +REK+ +  E V+G RMH ++ R GGV+ D+P G    +  F      R+ E E
Sbjct: 529  VFYTFTDREKIFDIVEMVTGGRMHPSWFRIGGVADDLPEGWDGAVKAFLDWMPGRLKEYE 588

Query: 789  DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            D+L  N I+ +R K +GV+T  +AL +G +G  LR
Sbjct: 589  DLLKGNPIFRERLKGVGVITGDEALEWGITGPNLR 623


>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
           Cystobacterineae|Rep: NADH dehydrogenase -
           Anaeromyxobacter sp. Fw109-5
          Length = 431

 Score =  193 bits (471), Expect = 4e-48
 Identities = 97/228 (42%), Positives = 142/228 (62%)
 Frame = +3

Query: 210 NSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEY 389
           N +  P   K+  M +N GP HPA HGV R V+ELDGE +R+    IG LHRG EK  E 
Sbjct: 37  NELDAPLASKL--MTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN 94

Query: 390 KTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMA 569
            T+TQ  PY DRL+YVS + N   ++LAVEKL  +DVP RAKY+R + +EI R+ +H+  
Sbjct: 95  VTWTQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTL 154

Query: 570 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYE 749
           VG  A+++GA+T F +  E R+ + +    + GAR+ + Y R GGV+ D P G ++   +
Sbjct: 155 VGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEK 214

Query: 750 FSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
              +    +DE++ +++ NRI++ RT+  GVV   DA+  GF+G  LR
Sbjct: 215 TLDRVKGYVDEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLR 262


>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
           (class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
          Length = 374

 Score =  192 bits (467), Expect = 1e-47
 Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
 Frame = +3

Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
           + + + +N GPQHP+ HGV R+++ +DGET+    P  G LHR  E+L E  TY Q++PY
Sbjct: 3   QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62

Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
            DRLDY + M N    +LAVEKL  I VP RA+YIR L  E+TR+LNH  AVG    D+G
Sbjct: 63  TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122

Query: 597 A-LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
           A  TP  +   EREK+++ +E  SGARM   Y R GGV  D+P   +  + E        
Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSF 182

Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            DE E +L  N I + RT ++GV+  + A++Y  +G +LR
Sbjct: 183 FDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLR 222


>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
           oxidoreductase, D subunit; n=7; Bacteria|Rep:
           Proton-translocating NADH-quinone oxidoreductase, D
           subunit - Dehalococcoides sp. (strain CBDB1)
          Length = 367

 Score =  191 bits (466), Expect = 2e-47
 Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
 Frame = +3

Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
           K  N ILN GPQHP+ HGV RL + LDGE +   +P  G LHRG EKL E +TY Q +P+
Sbjct: 4   KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63

Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
            DRLDY+  M N   Y +AVEKL  I VP RA+YIR +  E+ R+ +H+  +G    D+G
Sbjct: 64  TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123

Query: 597 AL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
           AL TP  ++F EREK++E ++  SG R++  Y R GG   D+P   +  +          
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKILLDTLPGF 183

Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           IDE E +++TN I + RTK +GV+    A+N   +G +LR
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRDLAINSSAAGPVLR 223


>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
           n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
           D - Mycobacterium bovis
          Length = 440

 Score =  191 bits (466), Expect = 2e-47
 Identities = 90/217 (41%), Positives = 139/217 (64%), Gaps = 2/217 (0%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           +++N GPQHP+ HGVLRL+LE++GETV  A   IG LH G EK +EY+ +TQ + +  R+
Sbjct: 39  IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98

Query: 429 DYVSMMCNEQCYSLAVEKLLNI--DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
           DY+S   NE  Y L VEKLL I  ++P R   IR L  E+ R+ +H++A+ T  +++GA+
Sbjct: 99  DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158

Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
           TP F  F  RE ++  +E+++G RM++AYIRPGGV+ D+P     +I E   +  + + E
Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218

Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           + ++L  N IW  RT+ +G +     +  G +G +LR
Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILR 255


>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
           Actinomycetales|Rep: NADH dehydrogenase - Salinispora
           tropica CNB-440
          Length = 388

 Score =  188 bits (459), Expect = 1e-46
 Identities = 90/216 (41%), Positives = 137/216 (63%)
 Frame = +3

Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
           +M+LN GPQHP+ HGVLRL L LDGE V +A+P +G +HRG EKL E + Y Q +   +R
Sbjct: 27  DMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANR 86

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
            D++S   NE    LAVE+LL ++VP RA ++R   AE+ R+LNH+M +G++ L++GA+T
Sbjct: 87  HDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAIT 146

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
           P F+ F ERE +    E VSG R+H  + R GG+  ++P G          +    + ++
Sbjct: 147 PMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLPDL 206

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++++  N I++ RT  +GV++A  A  YG SG + R
Sbjct: 207 DNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVAR 242


>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
           chain C/D; n=1; Candidatus Protochlamydia amoebophila
           UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
           C/D - Protochlamydia amoebophila (strain UWE25)
          Length = 402

 Score =  184 bits (448), Expect = 3e-45
 Identities = 92/225 (40%), Positives = 140/225 (62%)
 Frame = +3

Query: 219 IKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTY 398
           +K  E+    M LN GPQHP+ HGVLRL L L+GE V + DP IG LH G EK  E +TY
Sbjct: 9   LKELEESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTY 68

Query: 399 TQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGT 578
            Q     DRLDY+S    EQ ++ A+E+L+NI+VP RA+ IR +  E++R+ +H++  GT
Sbjct: 69  HQVFTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGT 128

Query: 579 HALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSS 758
            AL++   + F + F EREK+++ +E+VSGARM  +  R GG++ D+    +  + EF S
Sbjct: 129 SALELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFIS 188

Query: 759 KFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            F +   E++ +LT N +W +R + + V+  +    Y  +G +LR
Sbjct: 189 GFQKIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLR 233


>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
           propionicus DSM 2379|Rep: NADH dehydrogenase -
           Pelobacter propionicus (strain DSM 2379)
          Length = 403

 Score =  180 bits (439), Expect = 3e-44
 Identities = 86/219 (39%), Positives = 139/219 (63%), Gaps = 3/219 (1%)
 Frame = +3

Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
           ++++N GP HPA HG ++++  LDGE V  AD H G LHRG EK  E+ TY + +P+ DR
Sbjct: 19  HVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKIIPFTDR 78

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           L+Y S + N   Y   VEKLL I++  R  Y+RTL AE  R+ +H+  V    +++GA+T
Sbjct: 79  LNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVMEMGAMT 138

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP---LGLMDDIYEFSSKFAERI 776
            F +L   R+ + E   +++GAR+  ++ R GG+  D+P   L  +++I +F+ K+  RI
Sbjct: 139 AFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQFTEKYCGRI 198

Query: 777 DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                +L  NRI++ RT+D+G ++ + ALN+G++G +LR
Sbjct: 199 ---HGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILR 234


>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
           n=95; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit C/D - Salmonella typhimurium
          Length = 600

 Score =  179 bits (435), Expect = 1e-43
 Identities = 87/215 (40%), Positives = 129/215 (60%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           M LN GP HP+AHG  R++L+LDGE +    P IG  HRG EK+ E +++   +PY DR+
Sbjct: 216 MFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRI 275

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
           +Y+    NE  Y LAVEKL  I VP R   IR + +E+ R+ +H++ + T   DVGA+TP
Sbjct: 276 EYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTP 335

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
            F+ F +R+K+ +  E ++G RMH A+ R GGV+ D+P G    + EF     +R+D  E
Sbjct: 336 VFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYE 395

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                N I   R++ +    A++AL +G +G  LR
Sbjct: 396 KAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLR 430


>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=2; Desulfitobacterium hafniense|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Desulfitobacterium hafniense (strain DCB-2)
          Length = 370

 Score =  175 bits (426), Expect = 1e-42
 Identities = 82/215 (38%), Positives = 131/215 (60%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           ++LN GPQHP+ HGV R+V+ L GETV   +P IG LHRG EK+ E +TY Q +PY DRL
Sbjct: 12  LLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIPYTDRL 71

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
           DY++   N   Y   VEKL+ +++P RA+Y+R + AE+ R  +H + + + ALD+   T 
Sbjct: 72  DYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDMAGWTA 131

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
           + + F +RE++++ +E +SG+R+    +R GGVS + P      +  F     E+++E  
Sbjct: 132 WGYPFRDRERILDLFEMMSGSRLTVNCMRIGGVSAEPPAEFWPALESFLDDMPEKLEEYF 191

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++   N I   R K +G+++ + A N   +G  LR
Sbjct: 192 NIYMGNEIAQARMKKVGILSKEVAENLCITGPALR 226


>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
           Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 374

 Score =  172 bits (419), Expect = 9e-42
 Identities = 83/215 (38%), Positives = 137/215 (63%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 428
           MI++ GPQHP   G  RL L+L GET+  A+  +G +H+G EK++E +TY Q +   DR+
Sbjct: 10  MIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITIVDRI 69

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
            Y+  + NE+CY   VEKLL+I+ P RA+YIR +  E++RL +H++ +G +   +G ++ 
Sbjct: 70  CYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIGFVSM 129

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
           F +  +ERE ++   + V+GAR+  +Y+R GGV  D+P G  +      +K  + I + E
Sbjct: 130 FMYTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLPEGFKEKTIPVLNKLKKVIRDYE 189

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++  ++ I+ +RT  IGV+TA +A + G SG +LR
Sbjct: 190 EMFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLR 224


>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
           Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
           Bacteroides thetaiotaomicron
          Length = 538

 Score =  171 bits (417), Expect = 2e-41
 Identities = 88/238 (36%), Positives = 136/238 (57%), Gaps = 3/238 (1%)
 Frame = +3

Query: 177 ESTKSLKPVPYNSIIKPAEKKV---RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPH 347
           ++T+ ++  P +  IK  E K+      ++N GPQHPA HGV+R  + L+GE +R  D +
Sbjct: 154 DTTQEIELNP-DGTIKNREMKLFGEEEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDAN 212

Query: 348 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 527
            G +HRG EK+ E  TY Q L   DRLDY+    N     + +EK + I+V  R KYIRT
Sbjct: 213 CGYIHRGIEKMNESLTYPQTLALTDRLDYLGAHQNRHALCMCIEKAMGIEVSDRVKYIRT 272

Query: 528 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 707
           +  E+ R+ +H++     A+D+GALT FF+ F +REK+++ +E   G R+   Y   GGV
Sbjct: 273 IMDELQRIDSHLLFYSALAMDLGALTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGV 332

Query: 708 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
             D+    +  + EF       I E  D+ T N I   R K +GV++ +DA+++G +G
Sbjct: 333 QADLHPNFVKRVKEFIPYMRGIIHEYHDIFTGNIIAQSRMKGVGVLSREDAISFGCTG 390


>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
           n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
           NADH-quinone oxidoreductase chain c/d - Campylobacter
           fetus subsp. fetus (strain 82-40)
          Length = 561

 Score =  170 bits (413), Expect = 5e-41
 Identities = 81/221 (36%), Positives = 132/221 (59%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           E K +   LN GP HPA HG +R  + LDGE + +    IG LHRG EK  E  +Y Q +
Sbjct: 172 EFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQII 231

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
           PY DRL+Y S M N   Y+ AVE+ L +++P R  ++R +  E+ R+++H + +G   +D
Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           +G LT +++L+  RE++  F  +++GAR   ++ R GG++ D   G  +++        +
Sbjct: 292 MGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEK 351

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            +D+   ++  NRI++ R ++I  + A DAL+YGFSG  LR
Sbjct: 352 GVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLR 392


>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
           Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
           Photobacterium sp. SKA34
          Length = 565

 Score =  168 bits (409), Expect = 1e-40
 Identities = 80/216 (37%), Positives = 128/216 (59%)
 Frame = +3

Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
           +M+LN GP HP   GV+RL +++ GE +   D  IG  HRG EK+ E  T+   +PY DR
Sbjct: 180 SMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYIPYTDR 239

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           +DY+  +  E  Y L +E +  I+VP RAK +R +  E+ R+ +H++  G+   ++G + 
Sbjct: 240 IDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMA 299

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
           P F+ F EREK+ +  E + G RMH A+ R GGVS D+P G  D +        + + ++
Sbjct: 300 PAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDL 359

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           E ++T + I+  RT++I V +   AL++G +G  LR
Sbjct: 360 EKLMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLR 395


>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
           subunit homolog; n=3; Trypanosomatidae|Rep:
           NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
           Trypanosoma brucei brucei
          Length = 386

 Score =  167 bits (407), Expect = 3e-40
 Identities = 87/211 (41%), Positives = 118/211 (55%)
 Frame = +3

Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
           FGPQHPAAHGVL  +L   GE +   D  IG LHRGTEKL EYK+  Q LPYFDRLDYVS
Sbjct: 15  FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVS 74

Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
           + CNE   SL  E +L   + LR  ++R L  E TR  N ++ +    LD+G L+P  W 
Sbjct: 75  VCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWS 134

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
           FEER+K+M F++   G RMH A++   G+  D   G +D +          +D  + +  
Sbjct: 135 FEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCYDLLFV 194

Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            NR++  R + +      D +    SGV+ R
Sbjct: 195 GNRLFYLRLRGLSFFDLYDLVFNSLSGVLSR 225


>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
           Bacteria|Rep: NADH dehydrogenase I, D subunit -
           Leptospira interrogans
          Length = 405

 Score =  166 bits (403), Expect = 8e-40
 Identities = 79/216 (36%), Positives = 134/216 (62%)
 Frame = +3

Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
           ++++N GP HPA HG+L+ V+++DGE +  A+  IG +HR  EKL E  TY Q L   DR
Sbjct: 21  HLLVNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDR 80

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           ++YVS   N   + LAVEK++ I+VP R  Y+R + +E++R+++HI+  G   +D+GA +
Sbjct: 81  MNYVSTPLNNIGWILAVEKMMQIEVPDRVTYVRMIISELSRIIDHIICTGILGVDLGAFS 140

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
               LF  RE + +  E+++GAR+   + R GG+  D+    + ++          I+E 
Sbjct: 141 GMLHLFHHRENIYQIIEKLTGARLTTTFCRIGGLEKDIYPDFVKEVKLVCKGLKPAIEEF 200

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
             +L  N+I++ RT+ IG ++A++A+ YG++G  LR
Sbjct: 201 NSLLLKNKIFLGRTEGIGGISAENAIAYGYTGPNLR 236


>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
           Deltaproteobacteria|Rep: NADH dehydrogenase -
           Desulfuromonas acetoxidans DSM 684
          Length = 374

 Score =  162 bits (394), Expect = 9e-39
 Identities = 79/221 (35%), Positives = 127/221 (57%)
 Frame = +3

Query: 231 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           +++    +LN GPQHP+ HGVLR++LE++GE V    P +G  HR  EK+ E+K     +
Sbjct: 9   DERHHRFVLNMGPQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKSFM 68

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
           P   R+DY+  +     Y+L +EK   I+VP RA YIR + +E+ R+ +H++  G + LD
Sbjct: 69  PNTARMDYLGALIYNHGYALLLEKATGIEVPRRADYIRVITSELNRIQSHLLWFGAYLLD 128

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           +GA TP  + F++RE++++  E V+G+R+   Y R GGV  D+    +     F  +   
Sbjct: 129 LGAFTPIMYAFDDREEILDILEDVTGSRLTYCYFRVGGVCKDIDDKFVASTRNFIDRLRG 188

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           R    E+++  N I  +R K IG  T +    YG +G +LR
Sbjct: 189 RFPMYEELVNGNIILQKRLKGIGEYTPELCARYGVTGPLLR 229


>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
           chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
           hospitalis KIN4/I
          Length = 540

 Score =  157 bits (380), Expect = 5e-37
 Identities = 75/210 (35%), Positives = 123/210 (58%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GPQHPA HG +  +L L GE V    P +G +HRG E + E K Y + +P  DR  Y+  
Sbjct: 176 GPQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPLLDRQCYIDG 235

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           +  E  Y +A+E+++++ V  RA+ +R L AE++R+ +H++ +G+ A +V  LT F W  
Sbjct: 236 IGWEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTV 295

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
            +RE  +   E ++G RM   Y+RPGGV+ D+P G  D   +  ++F +  +++ +    
Sbjct: 296 RDREVFINLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLD 355

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           N     R + +  V+A+DA+ YG+SG  LR
Sbjct: 356 NPTVAMRAEGVAQVSAEDAIKYGWSGPNLR 385


>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
           Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 562

 Score =  155 bits (377), Expect = 1e-36
 Identities = 87/222 (39%), Positives = 127/222 (57%), Gaps = 7/222 (3%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYFDR 425
           M LN GP HPA HGVL +   LDGE V   +P IG LHR  E++ +  TY  Q +PY DR
Sbjct: 191 MFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDR 250

Query: 426 LDY-VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GA 599
            DY    + NE  Y+   E L +IDVP  A+ +RT+  E+ R+  H++A+GT  LD+ G 
Sbjct: 251 WDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGD 310

Query: 600 LTP-FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP---LGLMDDIYEFSSKFA 767
            T  F +   +RE +    E ++G RM   Y+R GGV  D+P       + + +F  +  
Sbjct: 311 FTAIFMYAMRDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELP 370

Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ER+DE  D++T+N I+  RT + GV+  + A +YG +G + R
Sbjct: 371 ERLDEYSDLITSNEIFQARTVNTGVLDYETAKDYGVTGPVAR 412


>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
           n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
           subunit D - Cenarchaeum symbiosum
          Length = 379

 Score =  149 bits (360), Expect = 1e-34
 Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
 Frame = +3

Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
           R M LN GPQHP + G +RLV+++DG+ + + DP  G +HRG EK+ EY+ +   +P+ +
Sbjct: 17  RIMTLNVGPQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVLNIPHLE 75

Query: 423 RLDYVSMMCNEQC-YSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGA 599
           R   +   CN    Y LA E ++ ++VP RAKY+R + +E+ + +     +  + + +G 
Sbjct: 76  R-PVIHDSCNILYPYCLAAEDIIGVEVPERAKYVRVIASELNKCIYIQYWLAIYGIFLGH 134

Query: 600 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERID 779
            T F W   +RE +++  E+++GAR+  AY  PGGV  D+P    D      + F +RI 
Sbjct: 135 STMFMWPAGDRELLIDLMEKLTGARVTHAYFVPGGVRNDLPANFEDVCLRQVNYFEKRIK 194

Query: 780 EVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           E  D+   N I   RT   GV++ QDA+ +G +G +LR
Sbjct: 195 EYADIFYDNPILKARTVGTGVLSRQDAVRFGTTGSVLR 232


>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
           putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
           49 kDa subunit, putative - Thermotoga maritima
          Length = 368

 Score =  141 bits (342), Expect = 2e-32
 Identities = 72/213 (33%), Positives = 121/213 (56%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           L FGP HP  HG   + + ++G+ V+ A P  G LHRG EKL+E + +   +    R+  
Sbjct: 6   LFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRICV 65

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
                NE CY++A+EK+  ++VP RA++IR +  E+ R+ NHI  VG     +G  T   
Sbjct: 66  PEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTASH 125

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           W   +R+++++ +E +SGAR++  YI PGGV  +M   + + I++       R+ + E++
Sbjct: 126 WGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMTPKIEEMIWKTLDYIESRLPDYENL 185

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  NRI   R +   ++T + A+  G +GV LR
Sbjct: 186 IFKNRIVHSRLRGRLILTREQAVEMGVTGVGLR 218


>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
           homolog - Aeropyrum pernix
          Length = 414

 Score =  136 bits (330), Expect = 5e-31
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
 Frame = +3

Query: 219 IKPAEKKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 395
           I P++K  +++  +  GPQHP + G +R+ + +DG+ +  ADP IG +HR  EKL E + 
Sbjct: 19  IIPSKKVAKDLYEIYIGPQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRG 77

Query: 396 YTQALPYFDRLDYVSMMCNEQC-YSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAV 572
           + + +P F+R+  +   CN    Y LAVEKL+ ++ PLRAKY+RTL  EI R+  H+   
Sbjct: 78  WIKPIPLFERMA-IHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGF 136

Query: 573 GTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEF 752
               + +G  T + W   +RE  +E  E ++GAR+  +Y  PGG   D+P    D     
Sbjct: 137 AIFGVFLGHSTMYMWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPADFPDMARRA 196

Query: 753 SSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
                +R+DE   +   N +   R + +GV+  + A   G  G
Sbjct: 197 VRYMRKRLDEYAKIFLNNPVIRSRLEGVGVIPKKAAAEMGIVG 239


>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
           n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
           oxidoreductase subunit - Beggiatoa sp. PS
          Length = 380

 Score =  136 bits (329), Expect = 7e-31
 Identities = 72/234 (30%), Positives = 123/234 (52%)
 Frame = +3

Query: 192 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 371
           ++P  Y  +  PA  +     L FGP HP   G   L + L G+ V       G LHRG 
Sbjct: 1   MRPENYQPVEHPASHEYE---LYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGF 57

Query: 372 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 551
           EK++E + + Q +    R+        E+ Y+ AVE L  ++VP RA++IR +  E++R+
Sbjct: 58  EKIMEERLWIQNVALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRI 117

Query: 552 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGL 731
             H+   G  +   G  +  FW   +R+ +++ +E ++GAR++  +I PGGV  D+P G 
Sbjct: 118 AAHLFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGF 177

Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +D + +       R+ E +D+   N ++ +R + IG +T + AL +G +G  LR
Sbjct: 178 LDRLGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLR 231


>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
           n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
           subunit - Pyrobaculum aerophilum
          Length = 430

 Score =  136 bits (329), Expect = 7e-31
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 2/231 (0%)
 Frame = +3

Query: 174 DESTKSLKPVPYNSIIKPAEKKVRNMILN--FGPQHPAAHGVLRLVLELDGETVRAADPH 347
           D  +  ++   Y  I+K    +    +L+  +GPQHP++ G  R ++E+DG+ V    P 
Sbjct: 24  DNLSLFMRTEEYGLILKEERLEGGRRVLDIFWGPQHPSS-GHTRFIIEVDGDVVVNVTPD 82

Query: 348 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 527
            G +HR  EKL E + + Q +P F+RL     +     Y+LA+E+L   DV  RA+Y+R 
Sbjct: 83  PGYVHRTMEKLGETRHWIQNIPLFERLSLPDAINVTWAYALAIERLAKYDVSPRAQYLRV 142

Query: 528 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 707
           +  E++R+  H+  +G HA+ +G+ T F W +  RE +++ +   SG+R    ++ PGGV
Sbjct: 143 IMGELSRISTHLYDLGLHAIMIGSSTGFMWAYGLRELLVQLWAMASGSRTTPTWVLPGGV 202

Query: 708 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
               P    +    F     +++DE   V+  N +   R KD+G ++ +DA
Sbjct: 203 RTAPPDAFYEQTRGFLDYLEKKVDEFMRVVVKNPVGYYRLKDVGYLSKEDA 253


>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
           Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
           chain D - Sulfurovum sp. (strain NBC37-1)
          Length = 547

 Score =  134 bits (324), Expect = 3e-30
 Identities = 66/214 (30%), Positives = 118/214 (55%)
 Frame = +3

Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
           +LN+GP HPA+ G +RL +  DGE + + DP IG + R  E L+  K +  A+   +RL 
Sbjct: 182 VLNWGPTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAIVAVERLC 240

Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
           ++  + +   Y +AVE++   ++   AK++R L  E+ R+ +H M +G    ++G  T  
Sbjct: 241 FMDNINSMTGYCMAVEEIAGTEITEFAKWMRVLLGEVARVSSHFMGLGGFFNNLGLHTLG 300

Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
            W  + RE  ++F E  SGAR+  A I PGGV   + + ++D++ +   KF   +++   
Sbjct: 301 LWNMDVREYFLDFLESYSGARIATAAIEPGGVRYGLDMAMLDELQKALDKFDATVEDTYM 360

Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +   N     R K++G++T ++   YG  G++ R
Sbjct: 361 IFVNNPTMKMRAKEVGILTDEEVEAYGLCGIVAR 394


>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
           Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
           Sulfolobus solfataricus
          Length = 410

 Score =  134 bits (324), Expect = 3e-30
 Identities = 68/213 (31%), Positives = 123/213 (57%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           LN GPQHP + G +R+ ++L+G+ +   D  +G +HR  EKL E + Y   +P  +R   
Sbjct: 30  LNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPAI 88

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           +  +     Y +AVEK+L +DVP RA+Y+R+  AE+ R+ +H+  +G  A+ +G  T F 
Sbjct: 89  LDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTGFM 148

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           W F +RE  +   E ++GAR+  +Y+ PGGV  D+   + +   +  +   +R+++ + +
Sbjct: 149 WGFGDREVWVTILEALTGARVTNSYVIPGGVRKDITQEIKEMTIKAIAYQRKRLEDWKKI 208

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
              N     R +++GV++ ++A+ +G  G  LR
Sbjct: 209 FFYNPSIRARLENVGVMSRENAIKWGAVGPNLR 241


>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
           subunit; n=2; Archaea|Rep: F420H2:quinone
           oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
          Length = 413

 Score =  131 bits (316), Expect = 3e-29
 Identities = 77/245 (31%), Positives = 128/245 (52%)
 Frame = +3

Query: 159 PVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAA 338
           PV  P E      P+P    ++   +    ++L  GPQHP + G +RL++ + G+ ++  
Sbjct: 12  PVEPPRELRSLFIPIP-PEYVEDTYRSDDFLVL-VGPQHPGS-GHMRLIVRVRGDIIQEV 68

Query: 339 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 518
            P  G +HR  EKL E + Y Q +P  +R   +        Y  A+E+ L+I+VP RAK+
Sbjct: 69  IPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDAPNFNLGYVRAIEEALDIEVPERAKF 128

Query: 519 IRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 698
           +RT+ AE+ R+  H+      A+ +G  T F + F  RE + E   R++GAR  +++I P
Sbjct: 129 LRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICEALVRLTGARFTSSFIIP 188

Query: 699 GGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFS 878
           GGV  D     +  IY+ +     R+   E +   N   + R +D+GV++ ++A+ YG  
Sbjct: 189 GGVRRDADDATLKWIYDMTLAMERRLKSFERIFINNPTVIARLQDVGVLSKEEAIKYGVV 248

Query: 879 GVMLR 893
           G  LR
Sbjct: 249 GPFLR 253


>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
           NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
          Length = 391

 Score =  130 bits (313), Expect = 6e-29
 Identities = 71/206 (34%), Positives = 113/206 (54%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GPQHP   G + + L L G+ +  A  H+G LHRG EKL+E +T+ Q  P   R+     
Sbjct: 34  GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEP 93

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             NE CY+ AVE+L  I+ P RA++IRTL  E+ R+ +++M +G  +   G      W  
Sbjct: 94  DFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWTT 153

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             R+ M++ +E ++GAR++  +I PGGV   +P G    + E   +    + +V DVL  
Sbjct: 154 YIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVLFH 213

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
           N ++ +R+  +GV+       YG +G
Sbjct: 214 NAVFKKRSVGVGVIDPAWLEPYGVTG 239


>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
           pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
           pendens (strain Hrk 5)
          Length = 404

 Score =  130 bits (313), Expect = 6e-29
 Identities = 69/213 (32%), Positives = 113/213 (53%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           L  GPQHP++ G +R ++ L G+ + + DP IG +HR  EKL E +   +A+P  +RL  
Sbjct: 25  LFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTI 83

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           +           A+E+LL+++ P RA Y+RTL +EI R+ +H+  +G   + +   T F 
Sbjct: 84  IDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAGIMLNHSTMFM 143

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           W F +RE  ++  E ++GAR+   Y  PGGV  D+P G  +   + +     R+ +   +
Sbjct: 144 WAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYMERRLQDYMRI 203

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
              N   V R + +GV+   +A   G  G  LR
Sbjct: 204 FLENPQVVARYEGVGVLKKSEASRLGVVGPNLR 236


>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Thermofilum pendens (strain Hrk 5)
          Length = 537

 Score =  127 bits (306), Expect = 4e-28
 Identities = 70/216 (32%), Positives = 116/216 (53%)
 Frame = +3

Query: 246 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 425
           ++++  GP HPA        L +DGE +  A   IG +HRG EK  E +++ + +   +R
Sbjct: 152 SVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVER 211

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           +  +    +  C+  AVE+LLN++VP RA Y+RTL AE+ R+ +H + +G      G  T
Sbjct: 212 ICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFET 271

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
            F W++  RE +M+  E +SG R+H +++  GGV  D+P  L+  + E    F    + +
Sbjct: 272 MFMWVWGLRETIMDLLEEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETFRREFESL 331

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            + L+ +   + RTK IG  +  DA  Y   G + R
Sbjct: 332 LESLSYSEEIISRTKGIGRYSLDDARKYCAVGPVRR 367


>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Ech
           hydrogenase, subunit E - Uncultured methanogenic
           archaeon RC-I
          Length = 359

 Score =  125 bits (301), Expect = 2e-27
 Identities = 67/213 (31%), Positives = 114/213 (53%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           + FGPQHP     +RL L LDGE V+  +   G +HRG EK  E+  Y +A    +R+  
Sbjct: 5   VQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEWD-YNKAAYLAERVCG 63

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           +    +  C+ LAVE  + +++P RA  IR +  E+ RL +H++A+G     +G    F 
Sbjct: 64  ICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFM 123

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
             F  RE +++ +ER +G R+       GGV+ ++   +  +I +F     +R  ++ED+
Sbjct: 124 LCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLEDM 183

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  +R    R K +G+++ Q AL+Y   G + R
Sbjct: 184 IVHSRTIKDRMKGVGILSKQTALDYSVVGPIAR 216


>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Staphylothermus marinus F1|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
           F1)
          Length = 375

 Score =  124 bits (300), Expect = 2e-27
 Identities = 71/219 (32%), Positives = 116/219 (52%)
 Frame = +3

Query: 237 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 416
           K + + +  GPQHP A G +   L LDGE V   D   G LHRG EK++EY+ +   L  
Sbjct: 3   KAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVM 62

Query: 417 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 596
             R+        E  Y+ A+E++  I+ P +AKY+R + AE +RL +H++ +   A  + 
Sbjct: 63  SARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPIA 122

Query: 597 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI 776
           A     W    RE+++++++ VSG R++  YI PGGV  D+P    +   +        I
Sbjct: 123 ARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKPLI 182

Query: 777 DEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           D++ D    + I+ +R +D+G +   DA+  G +G  LR
Sbjct: 183 DDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLR 221


>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
           Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
           D - Pyrococcus abyssi
          Length = 394

 Score =  112 bits (270), Expect = 1e-23
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 4/227 (1%)
 Frame = +3

Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
           P EK    +   FGPQH A      ++L++DG  V  A  + G LHRG EKL EY+ +  
Sbjct: 23  PIEKDTYELF--FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYT 79

Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
            +    R+        E  YSLAV++++  +VP RA++IRT   E+ R+  ++  +   +
Sbjct: 80  NIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLS 139

Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP----LGLMDDIYEF 752
             +G  T   W    RE++M  +E ++GAR++  Y  PGGV  D+P    L  + D  E+
Sbjct: 140 FKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEY 199

Query: 753 SSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                 ++ + ++++  N I  +R + IGV+  + AL  G +G  LR
Sbjct: 200 ---IKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243


>UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9;
           Euryarchaeota|Rep: Uncharacterized protein MJ0515 -
           Methanococcus jannaschii
          Length = 380

 Score =  112 bits (269), Expect = 1e-23
 Identities = 60/210 (28%), Positives = 110/210 (52%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP HP     LR+ L LDGE    A+  +G +HRG EK++E K   + +   +R+  +  
Sbjct: 11  GPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICS 70

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             +   ++  +E +  I++P +AKY+R +  E+ R+ +H++A   + L +   T   WL 
Sbjct: 71  YVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLAMWLL 130

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE +M+  E ++G R++  Y   GGV  D+   +MD+IY+    F + +  + +V  T
Sbjct: 131 NVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNIIEVFET 190

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
             +   R+K+IG++   + +     G + R
Sbjct: 191 GPLIALRSKEIGILPYHEVMRTRAVGPICR 220


>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
           subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
           oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
           tengcongensis
          Length = 360

 Score =  111 bits (266), Expect = 3e-23
 Identities = 68/211 (32%), Positives = 108/211 (51%)
 Frame = +3

Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
           FGPQHP     + L L ++ E V  A P  G +HRG E L++ + + Q +   D +  + 
Sbjct: 9   FGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGIC 68

Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
              + + Y  AVEKL+ IDVP RAK++R ++AEI R+ +H++  G  A   G    F   
Sbjct: 69  SAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLS 128

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
           +  REK+M+  E  +G R+  +    GGV  D+       +     +  E + E+E ++ 
Sbjct: 129 WRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGLKEIEKIVR 188

Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            N    +RT  IGV++ ++A   G  G  LR
Sbjct: 189 DNYTLKKRTVGIGVLSKEEAYMLGAVGPTLR 219


>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
           organisms|Rep: NADH dehydrogenase - Methanoregula boonei
           (strain 6A8)
          Length = 359

 Score =  108 bits (259), Expect = 2e-22
 Identities = 62/217 (28%), Positives = 111/217 (51%)
 Frame = +3

Query: 243 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 422
           + + + FGPQHP     + L L L+ E V    P IG +HRG EKL+E + Y + +   +
Sbjct: 3   KQITVPFGPQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVAE 62

Query: 423 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 602
           R+  +    +   Y+  VE ++ I+VP RA+Y+RT++ E +RL +H++ +G  A  +G  
Sbjct: 63  RICGICSYIHSNTYAECVEHIMKIEVPERAQYLRTIWTEYSRLHSHLLWLGLFADGMGFE 122

Query: 603 TPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
           + F   ++ RE +++  E  +G R+     + GGV  D+    +D++ +        I +
Sbjct: 123 SVFMNAWKLREHILDDLEATTGGRVIQGVCKIGGVRRDIAPEKLDEMVKGLRAMEPAIRD 182

Query: 783 VEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           + +V   +     R K +G++   DA   G  G   R
Sbjct: 183 LTNVFLNDASVSHRLKGVGILQKGDAYTLGAVGPTAR 219


>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
           n=4; Thermococcaceae|Rep: Mbh12 membrane bound
           hydrogenase alpha - Pyrococcus furiosus
          Length = 427

 Score =  103 bits (246), Expect = 8e-21
 Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 1/221 (0%)
 Frame = +3

Query: 234 KKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
           KKV   + + FGP HP      + ++ LDGE +   D  +G   RG + +   + Y Q +
Sbjct: 2   KKVEYWVKIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIM 61

Query: 411 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 590
              +R+  +    +   Y  AVE++  I+VP RA+YIR +  E+ R+ +H++ +G    D
Sbjct: 62  YLAERMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHD 121

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           +G  T     +  RE++M+  E VSG R++ + +  GGV  D+       I +    + E
Sbjct: 122 IGYDTVLHLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYRE 181

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            + ++EDV   +     R +D+ VV  + A+  G  G   R
Sbjct: 182 VLPQIEDVFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTAR 222


>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
           Bacteria|Rep: Carbon monoxide-induced hydrogenase -
           Rhodospirillum rubrum
          Length = 361

 Score =  101 bits (243), Expect = 2e-20
 Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 1/211 (0%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H A    +   +E+DGE V + D   G +HRG E L   +   Q +   +R+  +  
Sbjct: 9   GPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCS 68

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             + Q Y +A+E +  + VP RA+Y+R +  E  R+ +H+  V   A  VG  + F  + 
Sbjct: 69  NSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMHVM 128

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERI-DEVEDVLT 800
           E RE M +  E V G RM  A +  GGV  D+     D       K    + DE+  +  
Sbjct: 129 EAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIPLYQ 188

Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           TN   V RT+ IGV++A D ++YG  G + R
Sbjct: 189 TNPSIVDRTRGIGVLSAADCVDYGLMGPVAR 219


>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Staphylothermus marinus F1|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
           F1)
          Length = 406

 Score =   99 bits (238), Expect = 8e-20
 Identities = 60/206 (29%), Positives = 103/206 (50%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GPQHPA H  + L    DGE +   + + G  HRG EKL E  T+ + +    R+  +  
Sbjct: 18  GPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICN 77

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           + +  CY  A+E++L++    RAKY+R L  E  R+ +H++     A  +G  + F  + 
Sbjct: 78  LVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLFMNIM 137

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
            +RE +M+  E ++G R+ + Y+  GGV  D+     D + +   K   R+   + +   
Sbjct: 138 LDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKKLFME 197

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
           +   ++R  D+GV+   D   Y F G
Sbjct: 198 DDTILKRLVDVGVIKRSDVTRYTFVG 223


>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
           n=2; Pelobacter propionicus DSM 2379|Rep: NADH
           dehydrogenase (Ubiquinone) precursor - Pelobacter
           propionicus (strain DSM 2379)
          Length = 409

 Score = 97.5 bits (232), Expect = 4e-19
 Identities = 58/210 (27%), Positives = 98/210 (46%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GPQHPA        + + GE +      +G  HRG EK  E ++Y Q L   +R+  +  
Sbjct: 9   GPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICS 68

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             +   Y  AVE++  + +P RA YIR+L  E+ R+ +H++ +G    ++G  T   + +
Sbjct: 69  HTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTLLMYSW 128

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
            +RE +M+    + G R++      GGV  D+    ++ I    +   ER     +V T 
Sbjct: 129 RDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYIEVATE 188

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                 R   +G ++ +DAL     G  LR
Sbjct: 189 EPTLAARLAGVGYLSHEDALLLSAVGPTLR 218


>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
           Methanomicrobiales|Rep: NADH dehydrogenase -
           Methanospirillum hungatei (strain JF-1 / DSM 864)
          Length = 409

 Score = 97.5 bits (232), Expect = 4e-19
 Identities = 55/209 (26%), Positives = 106/209 (50%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           L  GP HPA    +    +++GE +   D   G  HRG E +   +   Q L   DR+  
Sbjct: 10  LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICG 69

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           +  + +   ++ AVE++ +I+VP RA Y+RT+ AE  R+ +HI+  G  A ++G  T F+
Sbjct: 70  ICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLFY 129

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
             ++ RE+ ++  E ++G R++   +  GG   D+   +   + +    +   ++++ ++
Sbjct: 130 LAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKMVNL 189

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSG 881
              ++    R KD G++T + AL     G
Sbjct: 190 FLNDKTIAMRCKDTGILTKRRALELATVG 218


>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
           uncultured methanogenic archaeon RC-I|Rep:
           [NiFe]-hydrogenase, large subunit - Uncultured
           methanogenic archaeon RC-I
          Length = 486

 Score = 95.9 bits (228), Expect = 1e-18
 Identities = 65/243 (26%), Positives = 112/243 (46%)
 Frame = +3

Query: 165 MYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 344
           M+ DE+    KP    +        V    + +GP HPA        + ++ E V+ AD 
Sbjct: 86  MHTDEAAPEKKPQSIQASDHITTMPVST--IPYGPYHPAFIESNYFKMAVEDEVVKKADL 143

Query: 345 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 524
            +G  HR   KL+E + Y + +   +R+  +    +   + LAVE +  + VP RA  IR
Sbjct: 144 KLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVENIGQVTVPKRADIIR 203

Query: 525 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGG 704
           T+  E+ R+ +H+MA+G     VG  T        RE + +  E VSG R+    I  GG
Sbjct: 204 TMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQDSLELVSGQRVTHGLITLGG 263

Query: 705 VSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGV 884
           V  D+     + +    +   + +  + D + +N + + R K++GV+  ++A+  G  G 
Sbjct: 264 VRRDITPAQSNFVKRKLASLKKGVQTLYDEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGP 323

Query: 885 MLR 893
             R
Sbjct: 324 TAR 326


>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
           n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
           hydrogenase, subunit EchE, putative - Caminibacter
           mediatlanticus TB-2
          Length = 363

 Score = 95.1 bits (226), Expect = 2e-18
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 1/216 (0%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 425
           +I+ FG QH A    +  +   + E +   D  +G +HRG EK    K  +T       R
Sbjct: 7   VIVPFGSQHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYLLTR 66

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           +     + +   Y   +EKLL  +VP RA+YIR L  E+ R+ +HI+A G  A  VG   
Sbjct: 67  ICGFCSITHASGYHHGIEKLLGAEVPKRAEYIRMLVTELDRIHSHILANGHVAEVVGYEN 126

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
            F      REK ME  E ++G R+     + GGV  D+   +++++ +  +K  + + ++
Sbjct: 127 LFMQSVRYREKAMELLELITGNRIQYDIYKIGGVRKDLTPEIVEEVKKKLTKLKDEMLKI 186

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            D   T+  +  +TK I  ++   A  Y   G + R
Sbjct: 187 YDFYDTDYTFGLKTKGISYISYDMAKEYNAVGPIAR 222


>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
           n=2; core eudicotyledons|Rep: NADH-ubiquinone
           oxidoreductase, chain 49kDa; Respiratory-chain NADH
           dehydrogenase, subunit 1 - Medicago truncatula (Barrel
           medic)
          Length = 288

 Score = 94.3 bits (224), Expect = 4e-18
 Identities = 49/97 (50%), Positives = 61/97 (62%)
 Frame = +3

Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
           PA +K   MI+N GPQHP+ HGVLRL++ LDGE V   +P +G LHRG EK+ E +T  Q
Sbjct: 4   PATRKDL-MIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAK 515
            LPY  R DY++ M  E       E+L NI VP R K
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRMK 99


>UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3;
           Methanomicrobiales|Rep: NADH dehydrogenase -
           Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
           / JR1)
          Length = 362

 Score = 93.9 bits (223), Expect = 5e-18
 Identities = 52/210 (24%), Positives = 108/210 (51%)
 Frame = +3

Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
           KK  ++ +  GP HP     +RL  E  GE V   +  +G + +G E+++  + + + + 
Sbjct: 2   KKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMF 61

Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 593
             +R+  +  + +   +   +E++ +I VP RA Y+R +  E+ R+ +HI+A  ++   +
Sbjct: 62  LAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTI 121

Query: 594 GALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAER 773
              T   +L   RE +++  ER++G+R++ AY+ PGGV  D+       +    +K  E 
Sbjct: 122 EHETLAMYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEE 181

Query: 774 IDEVEDVLTTNRIWVQRTKDIGVVTAQDAL 863
           +     +  T  +   R+K IG ++ ++A+
Sbjct: 182 MKRYVRIFETGPLIALRSKGIGYMSREEAI 211


>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
           subunit; n=1; Staphylothermus marinus F1|Rep: NADH
           dehydrogenase (Ubiquinone), 30 kDa subunit -
           Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
           F1)
          Length = 548

 Score = 93.1 bits (221), Expect = 9e-18
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 5/256 (1%)
 Frame = +3

Query: 141 VKQFEGPVMYPDESTKSLKPVPYNSIIKPAE---KKVRNMILNFGPQHPAAHGVLRLVLE 311
           V +F  P  +P+      K V Y    KP +   +      +  GP HPA H      L 
Sbjct: 128 VHRFVLPDEWPEGIYPLRKDVEYTYRPKPRKVPRQPPTGQRIPIGPYHPALHEPEYFELY 187

Query: 312 LDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYF-DRLDYVSMMCNEQCYSLAVEKL 485
           ++GE V   + +   +HRG EKL E   +  Q +P+  +R+  +    +   Y+++VE+ 
Sbjct: 188 VEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSYTMSVERA 247

Query: 486 LNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVS 665
             IDVP RA+YIR++  EI RL +H++ +G     +G    F   +  REK+M   E ++
Sbjct: 248 AKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVMVLAELLT 307

Query: 666 GARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVV 845
           G+R        GGV  D+ +  ++ +             + D++T+    V+R    G++
Sbjct: 308 GSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLITSISQIVKRASGTGIL 367

Query: 846 TAQDALNYGFSGVMLR 893
           +  DA      G + R
Sbjct: 368 SRDDARKLSVVGPVAR 383


>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
           n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
           precursor - Escherichia coli (strain K12)
          Length = 569

 Score = 93.1 bits (221), Expect = 9e-18
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
 Frame = +3

Query: 207 YNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIE 386
           Y  I +  +KK  N ++  GP H  +       L +DGE +  AD  +  +HRG EKL E
Sbjct: 168 YEFINELGDKK--NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225

Query: 387 YKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 563
            +  Y +     DR+  +    +   Y+ +VE  + I VP RA+ IR +  E+ RL +H+
Sbjct: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285

Query: 564 MAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDI 743
           + +G      G  + F   F  RE  M+  E ++GAR        GG+  D+    M   
Sbjct: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345

Query: 744 YEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            + + +    + E+ DVL +     QRT  IG +  + A ++   G M+R
Sbjct: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395


>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
           subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
           dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
           pendens (strain Hrk 5)
          Length = 567

 Score = 92.7 bits (220), Expect = 1e-17
 Identities = 68/216 (31%), Positives = 97/216 (44%), Gaps = 1/216 (0%)
 Frame = +3

Query: 249 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 425
           M +  GP H  A    +  + LDGE V   D  +  +HRG EKL E + TY Q     +R
Sbjct: 179 MQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAER 238

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 605
           +  +    +   Y  AVE+ L I+VP RA YIRTL  E+ RL +H++ +G      G   
Sbjct: 239 ICGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298

Query: 606 PFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEV 785
            F   F+ REK+M   E ++G R        GGV  D+         E   +  +    V
Sbjct: 299 GFMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAV 358

Query: 786 EDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
            D + +    V R KD+GV+    A      G + R
Sbjct: 359 LDAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVAR 394


>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
           hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
           Hydrogenase 4, component G or formate hydrogen lyase,
           subunit 5 - Pyrococcus abyssi
          Length = 588

 Score = 91.1 bits (216), Expect = 3e-17
 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 1/211 (0%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVS 440
           GP H          L + GE +   D      HRG EK+ E + TY Q L   +R+  + 
Sbjct: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261

Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
              +   Y++A+E+L ++++P RA+YIRTL  E+ R+ NH++ VG  A  VG  T F   
Sbjct: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
           +  RE +M   ER++G R        GGV  D+     ++I     +  E +    +V+ 
Sbjct: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381

Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
               +++R + +G++  + A  +   G   R
Sbjct: 382 NTNTFIKRAEGVGILPYKVAKEFSVLGPTAR 412


>UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
           Methanopyrus kandleri|Rep: Ni,Fe-hydrogenase III large
           subunit - Methanopyrus kandleri
          Length = 409

 Score = 88.6 bits (210), Expect = 2e-16
 Identities = 52/210 (24%), Positives = 95/210 (45%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP HP     LR+ L + GE V      +G  HRG EK++E   + +A    +R+  +  
Sbjct: 32  GPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCGICS 91

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             +  C+   VEKL   D   R  ++R L  E+ R+ +H++A   +   +   T F W  
Sbjct: 92  HAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMFVWNM 151

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE++++  E ++G R+   +   GGV +D+    ++++ E      + +     +   
Sbjct: 152 NTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIRDDVITYRRIAKN 211

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +     R++ +GV+T      Y   G   R
Sbjct: 212 DPFIKLRSRGVGVITKDHIRKYRVVGPQAR 241


>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
           n=1; uncultured methanogenic archaeon RC-I|Rep:
           Hydrogenase, large subunit-like protein - Uncultured
           methanogenic archaeon RC-I
          Length = 524

 Score = 86.6 bits (205), Expect = 8e-16
 Identities = 57/206 (27%), Positives = 98/206 (47%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GE V   +  +G +H+G EK+ E  TY + +   +R    + 
Sbjct: 173 GPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDNG 232

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           M +   Y  AVE+L  I+VP RA+YIRT+F E+ R+ NH+  VG  +LD          +
Sbjct: 233 MAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAY 292

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE+M++  E ++G+R+  +  + GGV  D+    ++ I     K      +  D++  
Sbjct: 293 ILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFVDLVNR 352

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSG 881
               + RT+  G +  + A++    G
Sbjct: 353 QTSILDRTETTGKLPLEAAVSLNIVG 378


>UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1;
           Propionibacterium acnes|Rep: Putative NADH dehydrogenase
           - Propionibacterium acnes
          Length = 396

 Score = 86.2 bits (204), Expect = 1e-15
 Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 6/226 (2%)
 Frame = +3

Query: 234 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 413
           KK     L+ G  HP   G++ +   +D + + ++  ++G LHRG EKL E + Y Q   
Sbjct: 36  KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 95

Query: 414 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNH---IMAVGTHA 584
              R D+ +    E   + A+E  + I +P R  +IRTL AE +R+ +H   +  VG H 
Sbjct: 96  LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155

Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
            D G         E   ++   ++R SG R+H    R GG+ +           E+    
Sbjct: 156 DDAGLENAIATAIENARRI---WQRCSGNRIHPMITRIGGLRIHPE-------SEWQPAL 205

Query: 765 AERIDEVEDVLTTNRIWVQRT---KDIGVVTAQDALNYGFSGVMLR 893
            E +D+   ++T  R  +  T   + + V+       YG SG + R
Sbjct: 206 GEWLDDANALVTRLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSR 251


>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
           Bacteria|Rep: Hydrogenase-4 component G - Escherichia
           coli (strain K12)
          Length = 555

 Score = 85.0 bits (201), Expect = 2e-15
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 1/209 (0%)
 Frame = +3

Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRL 428
           ++  GP H  +       L +DGE +  AD  +  +HRG EKL E +  Y +     DR+
Sbjct: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242

Query: 429 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 608
             +    +   Y+ +VE  L I+VP RA  IR++  E+ RL +H++ +G     VG  T 
Sbjct: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302

Query: 609 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVE 788
           F   F  REK M   E + G+R        GGV  D+         +   +    + E+ 
Sbjct: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGF 875
           ++L       QRT+ IG++  Q A +  F
Sbjct: 363 EMLLATPNMEQRTQGIGILDRQIARDLRF 391


>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
           Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
           oxidoreductase - Rhodospirillum rubrum (strain ATCC
           11170 / NCIB 8255)
          Length = 561

 Score = 82.6 bits (195), Expect = 1e-14
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 1/213 (0%)
 Frame = +3

Query: 225 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 404
           P   + +  I++ GP  P         L  +GE +  +D      HRG EKL +      
Sbjct: 167 PLGNESKATIISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYN 226

Query: 405 ALPYF-DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTH 581
            +P+  +R+  +    +  CY +AVE    I++P RAKYIR++  E+ RL +H++ +G  
Sbjct: 227 QVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLA 286

Query: 582 ALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSK 761
              +G  T     +  RE +M   E ++G R        GGV  D+   + D I    +K
Sbjct: 287 GHYLGFDTVLMQSWRIREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTK 346

Query: 762 FAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
                +E+   +  +     R   +GV++ +DA
Sbjct: 347 IGIECEELISAVAGDESLKMRMVKVGVLSHEDA 379


>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
           [NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
           Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
           [NiFe]-hydrogenase-3, large subunit - Candidatus
           Kuenenia stuttgartiensis
          Length = 531

 Score = 81.8 bits (193), Expect = 2e-14
 Identities = 52/192 (27%), Positives = 89/192 (46%)
 Frame = +3

Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
           G+++   D  +   H+GTEK+ E   YT+AL   +R+  V    +   Y  A+EK+  I+
Sbjct: 197 GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIE 256

Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
           +P RA++IRT+  E+ R+ NHI  VG        L      F  RE + +  E ++G R 
Sbjct: 257 IPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYLQQLNETITGNRY 316

Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
               +  GGV  D+   L   I    +   +   ++  ++  +   + R +  G ++ + 
Sbjct: 317 LRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKSSSLLDRLETTGRLSEEI 376

Query: 858 ALNYGFSGVMLR 893
           A   G  GV  R
Sbjct: 377 ARGLGVVGVAAR 388


>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
           Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
           subunit 5 - Desulfitobacterium hafniense (strain Y51)
          Length = 554

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H           +  GETV   D  +   H+G EKL+E K   + L   +R+  V  
Sbjct: 194 GPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERVCGVCA 253

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           + +   Y  AVEKL  ++VP      RT+ AE+ RL NH+  +G     VG         
Sbjct: 254 VSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNAL 313

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED---V 794
           + +E++     ++ G R     I PGGV   +P G  ++      + AE   + E+   +
Sbjct: 314 QNKEQLQRLNHQLFGHRFLRGNITPGGVK-KIPQG--EERAYLQRRLAELEQDFEEWLPL 370

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  +  + QR    GV++ Q AL+ G +G   R
Sbjct: 371 IQEHDGFRQRAITTGVLSKQSALDLGVTGPAAR 403


>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
           subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
           dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
           propionicus (strain DSM 2379)
          Length = 557

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 1/212 (0%)
 Frame = +3

Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYV 437
           FGP HP         L +DGE VR  +    ++HRG EKL E       +P   +R+  +
Sbjct: 175 FGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGI 234

Query: 438 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 617
               +   +  AVE    + VP RA++IRT+  EI RL +H M VG     VG  T F  
Sbjct: 235 CGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQ 294

Query: 618 LFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVL 797
            +  RE +M   E+++G R        GGV  D    L+ +      K      +V   +
Sbjct: 295 AWRIREPIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAV 354

Query: 798 TTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           + ++  + RT  +G+         G  G + R
Sbjct: 355 SKDKNIMARTSGVGMADKALCKEMGLVGPVAR 386


>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
           Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
           - Dehalococcoides sp. (strain CBDB1)
          Length = 526

 Score = 75.4 bits (177), Expect = 2e-12
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
 Frame = +3

Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
           GE +   +  +   HRG EKL   K     L   + +       N   YS AVE + +  
Sbjct: 196 GEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGISGDESAANTYAYSSAVEHICSSR 255

Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
            P RA+ +R +  E+ RL +H+  +     DVG       L   RE++M + +R++G+R 
Sbjct: 256 PPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVGAASLSALREELMRWNKRLTGSRF 315

Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE-VEDVLTTNRIWVQRTKDIGVVTAQ 854
               I PGG+  D+P  L+ ++ ++   F  R  E VE  L    + V R +  G+V  +
Sbjct: 316 LKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQVEKALAKTSV-VDRFETTGIVNNR 374

Query: 855 DALNYGFSGVMLR 893
             +    +GV  R
Sbjct: 375 LLIPLNITGVTAR 387


>UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Formate
           hydrogenlyase subunit 5 - Granulobacter bethesdensis
           (strain ATCC BAA-1260 / CGDNIH1)
          Length = 517

 Score = 74.5 bits (175), Expect = 3e-12
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 2/215 (0%)
 Frame = +3

Query: 81  AVHNVNSQR--DGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMI 254
           A H V+S+   D  RW P    +    GP + P E  +     P+ S    +   +    
Sbjct: 102 AEHGVDSRPWLDHGRW-PISAPLSPRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHE 160

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
            + GP HP      +L L L G  +R A+  +G  HRG + L+  K    A+    R+  
Sbjct: 161 RSIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRDAIRIAARITG 220

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
            + + +   ++ A E  L ++ P RA  +R L  E+ R   H+  +   A   GA T   
Sbjct: 221 DAALAHGLAFARAAEAALRLEPPPRALLLRGLMNELERCAVHLHVLAATASAAGADTYAA 280

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
            L   RE+++   +   G RM    + PGGV  D+
Sbjct: 281 KLSAWRERLLRAIQEAFGNRMMIDLLIPGGVLTDL 315


>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
           cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
           cellulolyticum H10
          Length = 530

 Score = 73.3 bits (172), Expect = 8e-12
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 1/207 (0%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GE +   +  +  +HRG EKL E + Y + L + +R+     
Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDET 236

Query: 444 MCNEQCYSLAVEKLLNID-VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
             N   +  A+EKL  I  +P RA Y R LFAE+ R+  H+  +    +D   + P    
Sbjct: 237 FTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQF 296

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
              R  +    E+++G+R      +PGG+  D        I E  +K  +   E   ++ 
Sbjct: 297 AMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAIIK 356

Query: 801 TNRIWVQRTKDIGVVTAQDALNYGFSG 881
            N +++ R +  G++    A++    G
Sbjct: 357 NNGMFIDRVEHTGILENSIAVDLNVVG 383


>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
           Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
           Mycobacterium tuberculosis
          Length = 492

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 58/210 (27%), Positives = 88/210 (41%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GET+      +  +HRG EKL   +  T A+   +R+   + 
Sbjct: 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
             +   +SLA+E  L I++P     +R L  E+ RL NH   +G  A DVG         
Sbjct: 208 AAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQ 267

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE ++     V+G R+    IR GGV+    L  + D  E ++  A  + EV  +   
Sbjct: 268 RIRENLLRRNAAVTGHRLLRGAIRAGGVA----LRALPDTDELAA-LAVDLAEVATLTLA 322

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           N +   R     V+   DA   G  G + R
Sbjct: 323 NSVVYDRFAGTAVLHPDDASALGCLGYVAR 352


>UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6;
           Methanococcales|Rep: Uncharacterized protein MJ1027 -
           Methanococcus jannaschii
          Length = 377

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 3/202 (1%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP HP      RL L ++ E ++ A+  IG+ +RG E ++E     +     +++  +  
Sbjct: 13  GPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKICGICS 72

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GALTPFFWL 620
             +  C     E+  +I+VP RA+YIR +  E+ RL +H++  G HA +V G  T  F  
Sbjct: 73  HIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFG-HAFEVLGFETMAFRA 131

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGV--SLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
           F  RE +M+    ++G R   +    GG+    ++    +  + E   KF E + ++ + 
Sbjct: 132 FMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKLLER 191

Query: 795 LTTNRIWVQRTKDIGVVTAQDA 860
              + + + R KD+GV+  + A
Sbjct: 192 TVNDPMIMSRIKDVGVLDKKTA 213


>UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus
           ferrooxydans PV-1|Rep: Hydrogenase subunit -
           Mariprofundus ferrooxydans PV-1
          Length = 532

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 47/192 (24%), Positives = 85/192 (44%)
 Frame = +3

Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
           GE +   +  +G +H+G E+ ++ K+  + L    R+   S + +   ++ A E    ID
Sbjct: 199 GEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDSTVAHAWAFAQACEYAGQID 258

Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
           VP RA +IR +  E  R+ NHI  +G    D         +   RE M   +  + G R+
Sbjct: 259 VPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLREDMARLHLELFGHRL 318

Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
               + PGGV +D+    +  + E +   A  ++ +  +   +     R    G+V  +D
Sbjct: 319 LMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLRAIYADHPSIQGRVIGSGMVPVED 378

Query: 858 ALNYGFSGVMLR 893
           A + G  G + R
Sbjct: 379 AQDIGLLGYVGR 390


>UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n=1;
           unknown|Rep: UPI00015BC86A UniRef100 entry - unknown
          Length = 420

 Score = 70.9 bits (166), Expect = 4e-11
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 8/197 (4%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            L GE +   +      H+G EKL E KT  + L   +R+     
Sbjct: 76  GPIHAGIIEPGHFRFTLIGEPILKLEIRHFYKHKGIEKLSEGKTPEEGLKLSERISGDHS 135

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           + +   +  AVEK+ +ID+P +A+YIR +  E+ RL+ ++        DVG       +F
Sbjct: 136 VAHSLAFVKAVEKIYDIDIPPKARYIRAILLELERLMCNLNDFAFIFQDVGYSFGAQKVF 195

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMP-------LGLMDDIY-EFSSKFAERID 779
             +E +M   E ++G R +   I+ GGVS ++        LGL++  Y ++   F     
Sbjct: 196 ALKEMLMRLNETLTGNRFNRNIIKIGGVSKELDTNAIKEVLGLLEKEYLKYKKLFLNSST 255

Query: 780 EVEDVLTTNRIWVQRTK 830
            +E   TT RI+ +  K
Sbjct: 256 VLERTDTTGRIFYETAK 272


>UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4;
           Methanomicrobia|Rep: Hydrogenase-3, subunit E -
           Methanosarcina acetivorans
          Length = 545

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GE + + +  +   HRG EKL E K+ ++ +   + +     
Sbjct: 181 GPVHAGIIEPGHFRFSVIGEPIFSLEIRLFYKHRGIEKLAEGKSPSECVALAEAVSGDES 240

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG---ALTPFF 614
           M N   + +AVE+   I VP RA+ +R +  E+ R+ + +  +   A+DVG     +PF 
Sbjct: 241 MANATGFCMAVEQACGISVPERAERLRAIMLELERIYSLLGDLAGMAVDVGFALVASPFS 300

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
            L   RE++    E+++G+R        GG+  D+P   + ++  F  KF+   +   D 
Sbjct: 301 IL---REEVFRQNEKLTGSRFLRGITVLGGLKKDIPDSALKELPAFLEKFSRAFESAYDR 357

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
             ++   + R    GV+  +       +G + R
Sbjct: 358 AMSSSSLIDRFATTGVIKKELVSPLNLTGPLAR 390


>UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4;
           Methanobacteriaceae|Rep: Hydrogenase large subunit -
           Methanobacterium thermoformicicum
          Length = 376

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 2/215 (0%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           +  G  H AA    R+ L ++ E VR A+  +G+ HRG E+++E     +A    +++  
Sbjct: 12  ITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVCG 71

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           +    +     L  EK L +++P RA YIR +  E+ R+ +H++ +      +G  T   
Sbjct: 72  ICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFSM 131

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLM--DDIYEFSSKFAERIDEVE 788
            LF  RE +ME    + G R+       GG+     L  M    I E      E+++   
Sbjct: 132 RLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFIEEKVEAFA 191

Query: 789 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +  T++ + + R   +  ++ +DAL    +G  LR
Sbjct: 192 ERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLR 226


>UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11;
           Alphaproteobacteria|Rep: Blr6343 protein -
           Bradyrhizobium japonicum
          Length = 503

 Score = 67.3 bits (157), Expect = 5e-10
 Identities = 55/210 (26%), Positives = 82/210 (39%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H              GETV   +  +G  H+G E L+      +A+    R+   S 
Sbjct: 153 GPVHAGIIEPGHFRFTASGETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSGDST 212

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           +     +S A E  L + VP RA ++R L AE+ RL NH+  +G    D           
Sbjct: 213 VAYAFAFSRAAEAALQLVVPDRAAWLRALLAELERLANHLGDIGAICNDASFTLMHALCG 272

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE ++   +   G R+    I PGGV+ D+     + I         R   + ++   
Sbjct: 273 VLRESILRASDTAFGHRLMRDIIVPGGVTRDLTEEGREIIRTTLHTIRLRFPALVELYDN 332

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                 RT D GV+ A  A  Y   G + R
Sbjct: 333 TASLQDRTVDTGVLKAALARQYAVGGYVGR 362


>UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Acidiphilium cryptum JF-5|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Acidiphilium cryptum (strain JF-5)
          Length = 476

 Score = 64.9 bits (151), Expect = 3e-09
 Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 7/221 (3%)
 Frame = +3

Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
           +L FGP                GE +    PH+ L HRG E     +T    L   +R+ 
Sbjct: 123 VLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVS 182

Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
            V  + +   Y+ A+E    + VP RA+Y R + AE+ RL NH+  +G H  D   L   
Sbjct: 183 GVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLG-HLADTTTLKVA 241

Query: 612 F---WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL----GLMDDIYEFSSKFAE 770
                L  ER K  +   RV+G+R     I PGG+  ++ +    G +D +     ++  
Sbjct: 242 HAEGALLAERVK--QIGARVTGSRFLRGVIAPGGLRRELRVEGLAGALDALRAPIRRYIA 299

Query: 771 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           R+D  E           R    GV+  + A + G +G + R
Sbjct: 300 RLDASES-------HFDRLATTGVLPREVAFDQGATGPVAR 333


>UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Herpetosiphon aurantiacus ATCC 23779
          Length = 368

 Score = 64.1 bits (149), Expect = 5e-09
 Identities = 49/214 (22%), Positives = 88/214 (41%)
 Frame = +3

Query: 252 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 431
           +L  GP HP     +R+VL ++GE +   +   G  +RG  + +   T  Q L     + 
Sbjct: 14  VLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSHIC 73

Query: 432 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 611
                 +   + LA+E+LL I+   RA  +R L  E+ R   H+  +      +G     
Sbjct: 74  AADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQRDA 133

Query: 612 FWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVED 791
             + +    + E  + + G      YI PGGV  D+     + +     +    +    D
Sbjct: 134 EHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYRFVD 193

Query: 792 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
               +R  ++R   +GV++ + A  +G  G M R
Sbjct: 194 RFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMAR 227


>UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei
           group|Rep: Hydrogenase subunit - Burkholderia
           pseudomallei (strain 1710b)
          Length = 567

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 51/210 (24%), Positives = 79/210 (37%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GE V   +  +G  HRG E+L E            R+   S 
Sbjct: 189 GPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIAGDST 248

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           +     Y +A+E+ L I VP RA  +R L  E  R+ NH+  +G    D G         
Sbjct: 249 VAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGLAHFS 308

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             +E  +   +R+ G R     I PGGV+ D+       I     +    +  ++ +   
Sbjct: 309 RLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQTIYDD 368

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
                 R    G + AQ   ++G  G+  R
Sbjct: 369 QSGLQDRFAGTGRLDAQAVAHFGVCGLAAR 398


>UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH
           dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
           (NADH-coenzyme Q reductase), partial; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to NADH
           dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
           (NADH-coenzyme Q reductase), partial - Ornithorhynchus
           anatinus
          Length = 127

 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
 Frame = +3

Query: 171 PDESTKSLKPVPYN--SIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGE 323
           P  S   L+  P +   +  P E+KV N+ LNFGPQHPAAHGVLRLV+EL GE
Sbjct: 74  PPASAPELRGSPPDPADVDPPKERKVANVTLNFGPQHPAAHGVLRLVMELSGE 126


>UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus
           capsulatus|Rep: Hydrogenase subunit - Methylococcus
           capsulatus
          Length = 527

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 45/192 (23%), Positives = 80/192 (41%)
 Frame = +3

Query: 318 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 497
           GETV   +  +G +H+G EKL   +          R+   + + +      A+E    + 
Sbjct: 194 GETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVSGDTTVGHAWAACQAMEHAAGVA 253

Query: 498 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 677
            P RA ++R +F E  R+ NH+  +G    D             RE  +    R  G R+
Sbjct: 254 PPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRDNLRWFGHRL 313

Query: 678 HAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
               I PGGV++D+P      +    +     ++E++ +L  + I+  R    GV++ + 
Sbjct: 314 LMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVVGAGVLSERI 373

Query: 858 ALNYGFSGVMLR 893
               G  G + R
Sbjct: 374 VRELGCLGYVAR 385


>UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-like;
           n=2; Chloroflexus|Rep: Ni Fe-hydrogenase III large
           subunit-like - Chloroflexus aggregans DSM 9485
          Length = 365

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 42/143 (29%), Positives = 67/143 (46%)
 Frame = +3

Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 644
           SLA+E L  I  PLRA+ IR + AE+ R  +H+  +      +G L     L +   ++ 
Sbjct: 74  SLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALG-LNSATRLSQLETRIR 132

Query: 645 EFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQR 824
                + G    AAYIRPGG++       + D     ++    + E+ +     R  V R
Sbjct: 133 SILLALLGHH-EAAYIRPGGLAEPPDEARLADTERAINELLPHMIELAEQTIPRRTLVAR 191

Query: 825 TKDIGVVTAQDALNYGFSGVMLR 893
             DIGV+T + A  +G +G + R
Sbjct: 192 MVDIGVLTTEAARQFGLAGPLGR 214


>UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate
           hydrogenlyase subunit 5-like protein; n=1; Methanococcus
           aeolicus Nankai-3|Rep: Hydrogenase, component E-formate
           hydrogenlyase subunit 5-like protein - Methanococcus
           aeolicus Nankai-3
          Length = 518

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 6/233 (2%)
 Frame = +3

Query: 114 HRWFPDPDFVKQFEG-PVMYPDESTKSLKPVPYN-SIIKPAEKKVRNMILNFGPQHPAAH 287
           H W     + K ++G P ++ +  T    P+P N    +   +++  + +  GP H    
Sbjct: 110 HPWLKSVRYHKNYKGAPDVFGNNYTA---PIPGNYPFYEVGGEEIHQVAV--GPVHAGII 164

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYVSMMCNEQCY 464
                     GET+ + +   G  HRG EK I      + LP   + +   +++ N  C+
Sbjct: 165 EPGHFRFNCIGETILSLEIQHGYQHRGIEKQI-LNCKKEVLPLIIESIAGDTVIGNSICF 223

Query: 465 SLAVEKLLNIDVPLRAKYI--RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREK 638
           S A+E L N +          R L  EI R+ NHI  +G  A DVG +    +    R  
Sbjct: 224 SEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVGYIPTASYYGRIRGD 283

Query: 639 MMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDD-IYEFSSKFAERIDEVEDV 794
            +  +  + G R   + +RP G     P  L DD I E   +F +   EV DV
Sbjct: 284 FLNMFVLICGNRFGRSSVRPFGA----PFKLSDDHIKELIKRFEQLKKEVIDV 332


>UniRef50_Q6APF2 Cluster: Related to hydrogenase, component
           E-formate hydrogenlyase subunit 5; n=1; Desulfotalea
           psychrophila|Rep: Related to hydrogenase, component
           E-formate hydrogenlyase subunit 5 - Desulfotalea
           psychrophila
          Length = 509

 Score = 56.8 bits (131), Expect = 7e-07
 Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 1/259 (0%)
 Frame = +3

Query: 108 DGHRWFPDPDFVKQFEGPV-MYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAA 284
           DGH W     + K + G   ++ +   K   P  Y       E  +  + +  GP H   
Sbjct: 106 DGHPWLKMVRYHKNYAGAKDVFGNNYGKENIPGNYPFFSVEGES-IHEVAV--GPVHAGI 162

Query: 285 HGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 464
                   +  GE V   +  +G  HRG EK++      +     + +   + + +    
Sbjct: 163 IEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIAGDTSIGHGLSM 222

Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 644
             A+E L  I V   AK IRT   E+ R+ NHI  +G  A D     P  +    R + +
Sbjct: 223 CQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFL 282

Query: 645 EFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQR 824
              + +SG R     +RPGGV+  M       I E   +    I+ + D++ +      R
Sbjct: 283 NLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICDLIFSAHTVQAR 342

Query: 825 TKDIGVVTAQDALNYGFSG 881
            +  G V  + A + G  G
Sbjct: 343 FEHTGTVQHEMAKDLGLVG 361


>UniRef50_Q5P2H0 Cluster: Subunit of formate hydrogenlyase-like
           membrane complex, related to large subunit of
           hydrogenases; n=8; Betaproteobacteria|Rep: Subunit of
           formate hydrogenlyase-like membrane complex, related to
           large subunit of hydrogenases - Azoarcus sp. (strain
           EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 551

 Score = 56.4 bits (130), Expect = 9e-07
 Identities = 46/207 (22%), Positives = 75/207 (36%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H            + GE V   +   G  H+G E+        +      R+   S 
Sbjct: 201 GPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRFMGMDIDEGARLAGRVSGDST 260

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           +     Y++A E    + VP RA ++R L  E  R+ NH+  +G    D           
Sbjct: 261 VAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGNDAAFGFALAQFS 320

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             RE  +       G R+    IRPGGV+ D+       +   +      + E++D+   
Sbjct: 321 RLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVAEVAELKDIYDE 380

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGV 884
           +     R    G V  + A   G +G+
Sbjct: 381 HAGLQDRFVTTGRVAPELAARLGLTGL 407


>UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
           Leptospirillum sp. Group II UBA|Rep: Ni,Fe-hydrogenase
           III large subunit - Leptospirillum sp. Group II UBA
          Length = 496

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 46/210 (21%), Positives = 82/210 (39%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H           ++ GE V   +  +G  H+G   L+ ++          R+   S 
Sbjct: 145 GPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRPVGDVTRLSSRISGDSA 204

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           +  +  ++ AVE       P RA ++R +  E  R+ NH+  +G    D G         
Sbjct: 205 VAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAGFAFGLVQFG 264

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTT 803
             +E ++    ++ G R     I PGGV++D   G +  +     +  E I  ++ +   
Sbjct: 265 RLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQEEIHVLKTIYDE 324

Query: 804 NRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           +     R    GV+    A  +G  GV+ R
Sbjct: 325 HGGLQDRFAGTGVLDPLLAGAWGLGGVVGR 354


>UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4;
           Leptospira|Rep: Hydrogenase-3 component E - Leptospira
           interrogans
          Length = 466

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 8/216 (3%)
 Frame = +3

Query: 264 GPQHPAA--HGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYV 437
           GP H      G  R +++  GE +R+ D  +G   RG   LI+ K    ++PY + +   
Sbjct: 110 GPIHAGVIEPGHFRFIVK--GEEIRSLDIRLGFQKRGLIDLIKGKGPKDSIPYAEAISGD 167

Query: 438 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 617
           S +     +S   E+  NI VP    + R +  E+ R+  HI  +G  A D+G       
Sbjct: 168 STISYAIAFSRIFEEAQNIAVPQELDFARLVLLELERVATHIGDMGAIAGDIGYYPLQGV 227

Query: 618 LFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVL 797
              +R   +   E ++G R     + PG +     L   + + E S +     +EV    
Sbjct: 228 CSLQRGIPLGVMEALTGNRFGRGALSPGKIFFRKGLD-RNKLKELSERIRSVTEEVVGHF 286

Query: 798 ------TTNRIWVQRTKDIGVVTAQDALNYGFSGVM 887
                 +TNR   +R +  GV+  +   + GF G++
Sbjct: 287 ERAAGRSTNR---ERLQSCGVIRQKQVRHLGFIGMV 319


>UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=1; Acidothermus cellulolyticus 11B|Rep:
           NADH-ubiquinone oxidoreductase, chain 49kDa -
           Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
          Length = 499

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
 Frame = +3

Query: 219 IKPAEKKVRNMILNFG----PQHPAAHGVLRLV---LELDGETVRAADPHIGLLHRGTEK 377
           + P E  + + +L  G    P  P   GV   V   +E  GE +      +   HRG E+
Sbjct: 121 LTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIER 180

Query: 378 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 557
             E    +  +   +R++ ++ + +   +  AVE L  +    R + +R +FAE+ R+ N
Sbjct: 181 RFEDLDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIAN 240

Query: 558 HIMAVGTHALDVGALTPFFWLF-EEREKMMEFYERVSGARMHAAYIRPGGVSLD 716
           H + V     D   L      F   +E+++       G+R     + PGG+  +
Sbjct: 241 H-LDVALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVPGGIGCE 293


>UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain
           49kDa; n=11; Bacteria|Rep: NADH-ubiquinone
           oxidoreductase chain 49kDa - Anaeromyxobacter sp.
           Fw109-5
          Length = 515

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 38/152 (25%), Positives = 64/152 (42%)
 Frame = +3

Query: 264 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 443
           GP H           +  GE V   +  +G  HRG E ++      ++L   + +   ++
Sbjct: 164 GPVHAGIIEPGHFRFQCHGEQVFHLEIVLGYQHRGIEPMLAGGPDRRSLALVESIAGDTV 223

Query: 444 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 623
           + +   +  A+E L     P RA  +R +  E+ RL NH+  +G  A DVG L    +  
Sbjct: 224 VGHGLAHVKALESLAGRPPPARAMALRGVALELERLANHVGDLGALAGDVGFLPTASYCG 283

Query: 624 EEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
             R + +     + G R     + PGGV  D+
Sbjct: 284 ALRAEFLNATAEICGNRFGRGLLVPGGVRFDL 315


>UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; n=2; Roseiflexus|Rep: NADH-ubiquinone
           oxidoreductase, chain 49kDa - Roseiflexus sp. RS-1
          Length = 358

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 46/213 (21%), Positives = 79/213 (37%)
 Frame = +3

Query: 255 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 434
           L  GP HPA  G  R +L +  + V   +   G   RG  + +       AL    R+  
Sbjct: 5   LALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVARICG 64

Query: 435 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
                +   +  A+E++    V  RA  +R   AE+ R   H+         +G      
Sbjct: 65  ECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQRGA 124

Query: 615 WLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDV 794
            L    ++  +    V+G R+      PGG+  D+      ++       +  +    D 
Sbjct: 125 ILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRFIDR 184

Query: 795 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           L   R  + RT ++GV+    A  +G  G + R
Sbjct: 185 LIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLAR 217


>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 152

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = +2

Query: 329 PCSRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDV 448
           P  R +HR  A  + K  R QD+HP  A+  P GLRVHDV
Sbjct: 113 PACRPAHRPVASRHRKAGRAQDLHPGAALHGPPGLRVHDV 152


>UniRef50_Q97ZA7 Cluster: Formate hydrogenlyase subunit 5; n=2;
           Sulfolobaceae|Rep: Formate hydrogenlyase subunit 5 -
           Sulfolobus solfataricus
          Length = 391

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 39/201 (19%), Positives = 83/201 (41%)
 Frame = +3

Query: 261 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 440
           +GP        ++ ++  +GE +   D  +   ++  E +I   T   AL   +R++   
Sbjct: 51  YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNREIVISGLTVDDALLRVERINAPF 107

Query: 441 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 620
              +   + LAVE  L ++     +  R    E+ R+ NH+  +           P + L
Sbjct: 108 SASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTYHL 167

Query: 621 FEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLT 800
               EK+     ++ G R         GV+ D   G +  I + + +F     ++ D L 
Sbjct: 168 LHLVEKVNRLIGKMCGHRYFFGVNAINGVNCD--FGNLLRIIDITKEF----KQIFDGLL 221

Query: 801 TNRIWVQRTKDIGVVTAQDAL 863
            +RI++ R ++ G +  ++++
Sbjct: 222 ESRIFIDRLQENGKIIDENSI 242


>UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE;
           n=2; unclassified Epsilonproteobacteria|Rep: Ni-Fe
           hydrogenase, large subunit HycE - Sulfurovum sp. (strain
           NBC37-1)
          Length = 455

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
 Frame = +3

Query: 360 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAE 539
           +RG EK++E KT  +A P  +R+     +  +  +   V +   +++PL  +       E
Sbjct: 149 YRGIEKMLEGKTLLEAKPVIERISGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLE 208

Query: 540 ITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDM 719
           + R+++H+  +G    D G      +  +  E      + V+G R     I      LD 
Sbjct: 209 MERIIHHLTDLGFIPNDAGFGAALAFASKLSEDARRQLQNVTGHRFGFDAIGFENKVLD- 267

Query: 720 PLGLMDDIYEFSSKFAERIDEVED-VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
               +  +Y++     + I   E  ++    +W  R    G++   D L Y   GV+ R
Sbjct: 268 ----ISSLYDYLDGLQKDIAFFETWIMDIPSLW-DRFDTTGILQKADVLKYDTVGVVAR 321


>UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit,
           dehydrogenase; n=8; Clostridium|Rep: Periplasmic
           hydrogenase large subunit, dehydrogenase - Clostridium
           acetobutylicum
          Length = 471

 Score = 40.7 bits (91), Expect = 0.049
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
           G L   +E+    +  A+   GLL RG EK+++ +    A+ + +R+  +    +    +
Sbjct: 15  GFLETKVEVTESVITNAETS-GLLFRGFEKMLKTRQPLDAIYFTERICGICSTAHAMAST 73

Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 563
           LA+E  L + V +   Y+R L      + NHI
Sbjct: 74  LALEDALKVSVSINDLYVRDLIHSFEFMQNHI 105


>UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;
           Proteobacteria|Rep: Uptake hydrogenase large subunit -
           Alcaligenes hydrogenophilus
          Length = 621

 Score = 40.7 bits (91), Expect = 0.049
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
           G +R  + LD   V       G + RG E +++      A  + +R+  V   C+     
Sbjct: 28  GHMRCEVNLDANNVIRNAVSTGTMWRGLEVILKRADPADAWAFVERICRVCTGCHALASV 87

Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
            AVE  L I +P  A  IR + A+  ++ +H++     HALD
Sbjct: 88  RAVEDALGIKIPKNAHLIREMMAKTLQVHDHVVHFYHLHALD 129


>UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1;
           Thermoplasma volcanium|Rep: Formate hydrogenlyase
           subunit 3 - Thermoplasma volcanium
          Length = 389

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 34/153 (22%), Positives = 66/153 (43%)
 Frame = +3

Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
           AL   +R++      +   + +AVE  LNIDVP   +Y R +  E+ R+ +++  V    
Sbjct: 96  ALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLC 155

Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
              G   P   +   RE +       +G R   +    GG   +   GL+  +       
Sbjct: 156 EPAGFGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFN---GLV--LESVIEDV 210

Query: 765 AERIDEVEDVLTTNRIWVQRTKDIGVVTAQDAL 863
            E  + + + L  ++I++ R ++ G +++ D L
Sbjct: 211 KEEFEGIFNDLLQSKIFLNRLQNNGKISSSDML 243


>UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=50;
           Bacteria|Rep: Hydrogenase-2 large chain precursor -
           Shigella flexneri
          Length = 567

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 27/93 (29%), Positives = 43/93 (46%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
           G LR+  E++   V  A    G + RG E++++ +    A     R+  V    +     
Sbjct: 15  GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73

Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 566
            A E  LNIDVP+ A+YIR +        +HI+
Sbjct: 74  RAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106


>UniRef50_UPI000038DF6E Cluster: hypothetical protein Faci_03001603;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03001603 - Ferroplasma acidarmanus fer1
          Length = 384

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 47/211 (22%), Positives = 88/211 (41%)
 Frame = +3

Query: 228 AEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 407
           A+K    +  N+GP        +   L   GET+R    H     R  + L +    ++A
Sbjct: 38  ADKNPGEIYFNYGPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDLKILGD--PVSRA 95

Query: 408 LPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 587
           L   +R++      N   Y LAVE+ L I+       +R +  E+ R+ ++I  +     
Sbjct: 96  LLKVERINGFHAASNSIGYILAVEEALGIE-NSELNDMRIVELELERIRSNIDVIKGMCE 154

Query: 588 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFA 767
             G   P   L   RE++     R  G R   +    G VS D     ++ I        
Sbjct: 155 SAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVNGFGTVSGDFSTIKLNAI-------E 207

Query: 768 ERIDEVEDVLTTNRIWVQRTKDIGVVTAQDA 860
           ++  ++ D L +++I++ R ++ G+V  +++
Sbjct: 208 KQFRDIYDGLLSSKIFLDRIQENGIVKNENS 238


>UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5;
           Bacteria|Rep: Hydrogenase large subunit - Aquifex
           aeolicus
          Length = 633

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADP-HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 464
           G LR+ + +D ET +  D    G + RG E ++  +       +  R+  V    +    
Sbjct: 14  GHLRIEIMVDEETGQVKDALSAGTMWRGIELIVRNRDPRDVWAFTQRICGVCTSIHALAS 73

Query: 465 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
             AVE  L I +P  A YIR +     ++ +H++     HALD
Sbjct: 74  LRAVEDALEITIPKNANYIRNIMYGSLQVHDHVVHFYHLHALD 116


>UniRef50_Q6L0U1 Cluster: Formate hydrogenlyase subunit 5; n=1;
           Picrophilus torridus|Rep: Formate hydrogenlyase subunit
           5 - Picrophilus torridus
          Length = 381

 Score = 36.7 bits (81), Expect = 0.80
 Identities = 32/151 (21%), Positives = 61/151 (40%)
 Frame = +3

Query: 405 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 584
           A+PY +R++         C+  +V   L I++P   K    +  E+ R+ NH+  +    
Sbjct: 93  AIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMC 152

Query: 585 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKF 764
              G   P   L   +E+     +   G R         GV+      L  DI++  + +
Sbjct: 153 EPAGFNVPANMLMHIKERFSRIIDITFGHRYFF------GVNQLKSKRL--DIHKMINVY 204

Query: 765 AERIDEVEDVLTTNRIWVQRTKDIGVVTAQD 857
              I+++   L  +R++  R +D G +   D
Sbjct: 205 KNEINDIYLNLLNSRLFTDRLQDNGRILDDD 235


>UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large
           subunit; n=1; Geobacter bemidjiensis Bem|Rep:
           Nickel-dependent hydrogenase, large subunit - Geobacter
           bemidjiensis Bem
          Length = 559

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 27/93 (29%), Positives = 44/93 (47%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
           G LR+ +E +G  V  A      + RG E +++ +    A  +  R   V    +     
Sbjct: 14  GHLRIDVEANGGKVTNAWSS-AQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAISSI 72

Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 566
            AVE  LN++VPL A+YIR +      + +HI+
Sbjct: 73  RAVEHALNVEVPLNAQYIRNIMIAQHSVQDHIV 105


>UniRef50_A6DBU3 Cluster: Nickel-dependent hydrogenase, large
           subunit; n=1; Caminibacter mediatlanticus TB-2|Rep:
           Nickel-dependent hydrogenase, large subunit -
           Caminibacter mediatlanticus TB-2
          Length = 386

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
 Frame = +3

Query: 360 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAE 539
           +RG E+ +  + +  AL    R+  +    +    + A+E  LN+ +  +A+ +R + + 
Sbjct: 36  YRGIEQYLVNRHFLDALVINPRICGICGHAHLLATAKAIENALNLKITKKAEILRDITSG 95

Query: 540 ITRLLNHI--MAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSL 713
           +  + NHI    +  +   +   +         +K+ +    + G   H +YI PGGV+ 
Sbjct: 96  LEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQFPHNSYIIPGGVTC 155

Query: 714 DM 719
           D+
Sbjct: 156 DL 157


>UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large
           subunit; n=3; Bacteria|Rep: Nickel-dependent
           hydrogenase, large subunit - Geobacter bemidjiensis Bem
          Length = 571

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +3

Query: 288 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 467
           G LR+ LE +G  +  A        RG EK++E +    A  +  R+  V    +     
Sbjct: 16  GHLRIELEAEGGRIGNAWA-CATQFRGIEKILEGRDPRDAWAFAQRICGVCTGVHAIASI 74

Query: 468 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 590
            AVE  +   +P  A+ IR L + +  L +H+M     HALD
Sbjct: 75  RAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALD 116


>UniRef50_UPI000155602C Cluster: PREDICTED: similar to pericentrin
           B; n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar
           to pericentrin B - Ornithorhynchus anatinus
          Length = 3068

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 884 HTAEAVVERVLRSDHADVLGPLHPDPVGGEHVLHLVDALGELRRELVDVVHQTQRHVK 711
           H  E   E VL +DH   L  L  +    +H   L + +   +REL D++ Q +RH+K
Sbjct: 399 HVKEEGAENVLENDHRAKLLLLQSEK---QHTSELKEEIEHFKRELQDIIVQHERHLK 453


>UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2;
            Trypanosoma cruzi|Rep: Putative uncharacterized protein -
            Trypanosoma cruzi
          Length = 1951

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 396  MSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRER 280
            + C+ + F  HG+G +  D+L  + +RP+  ++ A R+R
Sbjct: 1039 VECVLASFSIHGSGPIFVDVLFDVEIRPIRPQEGADRKR 1077


>UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4;
           Pyrobaculum|Rep: Methyltransferase type 11 - Pyrobaculum
           arsenaticum (strain DSM 13514 / JCM 11321)
          Length = 252

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 495 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 614
           D  LR +Y RTL+ +I  +L+  +  G   LD+GA T F+
Sbjct: 21  DKYLRTEYYRTLYRKIGEVLDKYINAGMRVLDIGAGTGFW 60


>UniRef50_A3H5B9 Cluster: Endonuclease V; n=1; Caldivirga
           maquilingensis IC-167|Rep: Endonuclease V - Caldivirga
           maquilingensis IC-167
          Length = 228

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 471 AVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG-ALTPFFWLFEEREKMME 647
           +V+ +  IDV  R  Y   + A  +  LNHI+  G +  +V     P    F E   M++
Sbjct: 43  SVDLITGIDVAYRGNYAYAVAATYSMRLNHIIEYGCYEGEVTFPYVPTLLSFRELSPMIK 102

Query: 648 FYERVSGARMHAAYIRPGGVSLDMPLGL 731
            + R+   R H   I   GV+    LG+
Sbjct: 103 AFMRLK-ERPHVVLIDGHGVAHPYRLGI 129


>UniRef50_Q9H7P9 Cluster: Pleckstrin homology domain-containing
           family G member 2; n=24; Euteleostomi|Rep: Pleckstrin
           homology domain-containing family G member 2 - Homo
           sapiens (Human)
          Length = 1386

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 732 MDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
           ++DIYEFSS+  E ++           +VQR++D  + T    +NY  S  +LR
Sbjct: 152 IEDIYEFSSELLEDLENSSSAGGIAECFVQRSEDFDIYTLY-CMNYPSSLALLR 204


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,037,648
Number of Sequences: 1657284
Number of extensions: 18597909
Number of successful extensions: 57660
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 54909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57593
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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