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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0023
         (765 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo...   160   4e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=...   154   2e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein...   153   6e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar...   146   4e-34
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E...   136   6e-31
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n...   124   2e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso...   122   1e-26
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso...   120   4e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot...   119   7e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard...   114   2e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ...   106   5e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal...    94   4e-18
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano...    83   6e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac...    81   2e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ...    78   2e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar...    77   5e-13
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu...    73   8e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th...    73   1e-11
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc...    69   2e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact...    65   2e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo...    64   5e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta...    62   1e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc...    60   4e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc...    60   6e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011...    57   4e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me...    57   4e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me...    54   3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc...    54   3e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop...    54   4e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac...    50   6e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi...    48   2e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph...    46   8e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote...    45   0.002
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n...    42   0.017
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005...    34   4.4  

>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
           Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
           melanogaster (Fruit fly)
          Length = 261

 Score =  160 bits (388), Expect = 4e-38
 Identities = 72/87 (82%), Positives = 80/87 (91%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV Q
Sbjct: 8   HLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRR 261
           RL+KVDGKVRTDPTYPAG+MDV+++ +
Sbjct: 68  RLVKVDGKVRTDPTYPAGYMDVITLEK 94



 Score =  144 bits (348), Expect = 3e-33
 Identities = 64/86 (74%), Positives = 73/86 (84%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPDP
Sbjct: 93  EKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDP 152

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
           LI  NDS+Q+DIA+ KI D+IKF+SG
Sbjct: 153 LIHANDSVQVDIASGKITDYIKFDSG 178



 Score =  127 bits (306), Expect = 3e-28
 Identities = 60/83 (72%), Positives = 67/83 (80%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGK  +  IS
Sbjct: 178 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYIS 237

Query: 689 LPRGKGXXXXXXXXERDKRIRSQ 757
           LP+GKG        ERDKR+ ++
Sbjct: 238 LPKGKG-VKLSIAEERDKRLAAK 259


>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
           n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
           isoform - Homo sapiens (Human)
          Length = 263

 Score =  154 bits (374), Expect = 2e-36
 Identities = 70/85 (82%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R IK+DGKVRTD TYPAGFMDV+S+
Sbjct: 68  RFIKIDGKVRTDITYPAGFMDVISI 92



 Score =  144 bits (348), Expect = 3e-33
 Identities = 62/86 (72%), Positives = 74/86 (86%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           +KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++  G K +P+LVTHD RTIRYPDP
Sbjct: 93  DKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDP 152

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
           LIKVND+IQ+D+ T KI DFIKF++G
Sbjct: 153 LIKVNDTIQIDLETGKITDFIKFDTG 178



 Score =  118 bits (285), Expect = 1e-25
 Identities = 52/85 (61%), Positives = 68/85 (80%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGK  +  IS
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237

Query: 689 LPRGKGXXXXXXXXERDKRIRSQRS 763
           LPRGKG        ERDKR+ +++S
Sbjct: 238 LPRGKG-IRLTIAEERDKRLAAKQS 261


>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
           S4, X isoform (LOC126235), mRNA; n=1; Takifugu
           rubripes|Rep: similar to 40S ribosomal protein S4, X
           isoform (LOC126235), mRNA - Takifugu rubripes
          Length = 291

 Score =  153 bits (370), Expect = 6e-36
 Identities = 69/85 (81%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R IK+DGKVRTD TYP GFMDV+S+
Sbjct: 68  RFIKIDGKVRTDITYPTGFMDVISI 92



 Score =  116 bits (279), Expect = 6e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)
 Frame = +2

Query: 512 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNISL 691
           N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGK  +  +SL
Sbjct: 211 NMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSL 270

Query: 692 PRGKGXXXXXXXXERDKRIRSQ 757
           PRGKG        ERDKR+ ++
Sbjct: 271 PRGKG-IRLTIAEERDKRLAAK 291



 Score = 93.5 bits (222), Expect(2) = 2e-27
 Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
 Frame = +3

Query: 336 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE-SG 512
           +YKLCKVK++  G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF+ S 
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211

Query: 513 TCV 521
            C+
Sbjct: 212 MCM 214



 Score = 52.4 bits (120), Expect(2) = 2e-27
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAK 338
           +KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 93  DKTGEHFRLIYDVKGRFTVHRITAEEAK 120


>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
           Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 262

 Score =  146 bits (355), Expect = 4e-34
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ Q
Sbjct: 8   HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68  RHIQVDGKVRTDKTYPAGFMDVVSI 92



 Score =  126 bits (304), Expect = 6e-28
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPL
Sbjct: 94  KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
           IK ND+I+LD+   KI++FIKF+ G  V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score =  102 bits (244), Expect = 1e-20
 Identities = 48/86 (55%), Positives = 62/86 (72%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VGN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  +  +
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236

Query: 686 SLPRGKGXXXXXXXXERDKRIRSQRS 763
           SLP+GKG         R KR+ SQ++
Sbjct: 237 SLPKGKGIKLTIIEEAR-KRLASQQA 261


>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S4 - Entamoeba histolytica HM-1:IMSS
          Length = 326

 Score =  136 bits (329), Expect = 6e-31
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRLNAP  WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV  IVK 
Sbjct: 8   HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRLMNCF 276
           R IK+DGK+RTD  YP GFMDV+S+ R    F
Sbjct: 68  RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99



 Score =  104 bits (250), Expect = 2e-21
 Identities = 44/85 (51%), Positives = 65/85 (76%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           +T E FRL+Y+ K RF +  +T E+AK+KLCK+++   G   +PY+VTHDGRTIRYP P 
Sbjct: 94  RTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPE 153

Query: 438 IKVNDSIQLDIATTKIMDFIKFESG 512
           ++ ND+I+L++ T KI+DF+KF+ G
Sbjct: 154 LQANDTIKLNLETGKIVDFVKFDIG 178



 Score = 93.9 bits (223), Expect = 4e-18
 Identities = 41/67 (61%), Positives = 50/67 (74%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           +GN  M+ GG  +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGK     +
Sbjct: 177 IGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLV 236

Query: 686 SLPRGKG 706
           +LP  KG
Sbjct: 237 NLPLDKG 243


>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
           Trichomonas vaginalis G3|Rep: 40S ribosomal protein
           S4-C, putative - Trichomonas vaginalis G3
          Length = 269

 Score =  124 bits (300), Expect = 2e-27
 Identities = 57/92 (61%), Positives = 68/92 (73%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRL AP  W+L K  G +A  PSTGPHKLRECLP+ IFLR+RLKYALT  E + IVK+
Sbjct: 22  HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRLMNCF 276
           RL+KVDGKVRT+  YP G MDV+ + +    F
Sbjct: 82  RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113



 Score =   99 bits (238), Expect = 6e-20
 Identities = 42/85 (49%), Positives = 62/85 (72%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           K+NELFR+IYD KGRF +H I  +EA +KL +V +   G K +P++VTHDGRTI Y DP 
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167

Query: 438 IKVNDSIQLDIATTKIMDFIKFESG 512
           ++V+D+++ +I T ++   IKF+ G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192



 Score = 77.8 bits (183), Expect = 3e-13
 Identities = 36/67 (53%), Positives = 48/67 (71%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VG++ M+T G N+GRVGTI   E+   SFDIVH+KD++G  FATR+ NVF+IG+     I
Sbjct: 191 VGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLI 250

Query: 686 SLPRGKG 706
           SLP  +G
Sbjct: 251 SLPAREG 257


>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=1; Macaca mulatta|Rep:
           PREDICTED: similar to 40S ribosomal protein S4, X
           isoform - Macaca mulatta
          Length = 244

 Score =  122 bits (293), Expect = 1e-26
 Identities = 60/88 (68%), Positives = 69/88 (78%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP  IFLRNRLKYALTG+EV KI  Q
Sbjct: 19  HLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQ 77

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRL 264
             IKVDGK+RTD   P   MDV+S+ ++
Sbjct: 78  WFIKVDGKIRTDNNLPYWIMDVISIDKM 105



 Score =  106 bits (254), Expect = 7e-22
 Identities = 51/109 (46%), Positives = 68/109 (62%)
 Frame = +3

Query: 222 LSCWIYGCCLNEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 401
           L  WI      +K  E F LIY +  RF +HRITPEE KYKLCK++++    K +P+LV 
Sbjct: 92  LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151

Query: 402 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGTCV*SREAVTWG 548
           HD  T+R+PD LIKVND+IQ+D+ T KI   +KF++G          WG
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199



 Score = 70.1 bits (164), Expect = 6e-11
 Identities = 31/62 (50%), Positives = 43/62 (69%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GNLC++TGG N GR+G I +RERHP SFD  H+KD+  ++F+     +F+I K  +  IS
Sbjct: 187 GNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWIS 242

Query: 689 LP 694
           LP
Sbjct: 243 LP 244


>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
           similar to 40S ribosomal protein S4, X isoform - Canis
           familiaris
          Length = 240

 Score =  120 bits (289), Expect = 4e-26
 Identities = 51/75 (68%), Positives = 63/75 (84%)
 Frame = +3

Query: 288 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 467
           D KGRF +HRITPEEAKYKL KV+++  G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76  DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135

Query: 468 IATTKIMDFIKFESG 512
           + T KI DF KF++G
Sbjct: 136 LETGKITDFFKFDTG 150



 Score =  116 bits (280), Expect = 5e-25
 Identities = 53/68 (77%), Positives = 58/68 (85%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI  Q
Sbjct: 8   HLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQ 67

Query: 181 RLIKVDGK 204
             IK+DGK
Sbjct: 68  HFIKMDGK 75



 Score =  106 bits (254), Expect = 7e-22
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGK     IS
Sbjct: 150 GNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNIPWIS 209

Query: 689 LPRGKG 706
           LP GKG
Sbjct: 210 LPHGKG 215


>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
           Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
           major
          Length = 273

 Score =  119 bits (287), Expect = 7e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRL APK WML KL GV+APRP  GPHKLRECLPL++ +RNRLKYAL   E   I++Q
Sbjct: 5   HLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQ 64

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
            L+ VD   R D  YPAGFMDVV +
Sbjct: 65  GLVHVDNHPRRDGKYPAGFMDVVEI 89



 Score = 83.4 bits (197), Expect = 6e-15
 Identities = 40/88 (45%), Positives = 52/88 (59%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KT + FRL+YDVKGRF +  ++  EA+ KL KV  + T    VP  VTHDG  IRYPDP 
Sbjct: 91  KTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPH 150

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
             + D+I  ++   K +D IK   G  V
Sbjct: 151 TSIGDTIVYNVKEKKCVDLIKNRQGKAV 178



 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK-ARRRNI 685
           G   ++TGG N GR+G IV  E HPG+F+I H+KD++G  FATR  N+F+IGK      +
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQV 234

Query: 686 SLPRGKGXXXXXXXXERDKRI 748
           ++P+ +G        ER++R+
Sbjct: 235 TVPKQQG-LRMNVIQEREERL 254


>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
           theta|Rep: 40S ribosomal protein S4 - Guillardia theta
           (Cryptomonas phi)
          Length = 257

 Score =  114 bits (275), Expect = 2e-24
 Identities = 50/86 (58%), Positives = 66/86 (76%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H KRLNAPK W+L+KLGG++APR S+GPHK +  +PLVI +RN+LKY+    E L I+K+
Sbjct: 8   HYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKK 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMR 258
             I VDGKVR D  +PAG MDV+S++
Sbjct: 68  NEIYVDGKVRADKNFPAGVMDVISIK 93



 Score =  111 bits (267), Expect = 2e-23
 Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
 Frame = +3

Query: 261 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 440
           T E +R++YD  G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LI
Sbjct: 95  TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154

Query: 441 KVNDSIQLDIATTKIMDFIKFESGT-CV 521
           K NDSI LD+   K++DFIKF  G+ CV
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCV 182



 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           +G+LC++  G N+GR+G  ++     GS  IV +KD  G +F+T+  N+F+IGK  +  I
Sbjct: 177 IGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFI 236

Query: 686 SLPRGKGXXXXXXXXERD 739
           SLPR +G        E D
Sbjct: 237 SLPRFRGLRTLTKSLEHD 254


>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal family S4e containing protein - Tetrahymena
           thermophila SB210
          Length = 370

 Score =  106 bits (255), Expect = 5e-22
 Identities = 45/86 (52%), Positives = 62/86 (72%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           EKT++ FR++YD KGRF +  ++ EEAKYKL KV   A GP  +PY+VTHD RTIR+P+P
Sbjct: 205 EKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNP 264

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
            IK+ D+++ D+   KI +F   ESG
Sbjct: 265 EIKIGDTLKYDLVNNKIENFAHLESG 290



 Score = 83.4 bits (197), Expect = 6e-15
 Identities = 35/66 (53%), Positives = 47/66 (71%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
           GN+C I  G N+GRVG I   E+H GSFDI H+KD+ G+ FATRL N+F++G+ ++  I 
Sbjct: 290 GNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIE 349

Query: 689 LPRGKG 706
           LP G G
Sbjct: 350 LPSGDG 355



 Score = 80.2 bits (189), Expect = 5e-14
 Identities = 53/123 (43%), Positives = 66/123 (53%), Gaps = 31/123 (25%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHKL 93
           HLKR+NAPK+WML+                         KL  +Y    A RPS GPHKL
Sbjct: 89  HLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHKL 148

Query: 94  RECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSMRRLM 267
           RE LPL + L+ RL YAL G +V  I+  K++ + VDGKVR D  YP G MDVV + +  
Sbjct: 149 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 208

Query: 268 NCF 276
             F
Sbjct: 209 QSF 211


>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
           Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
           Encephalitozoon cuniculi
          Length = 268

 Score = 93.9 bits (223), Expect = 4e-18
 Identities = 42/87 (48%), Positives = 59/87 (67%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKR  APK+WMLDK GG +A  P++GPHK  EC+PL   +   L+YA    E+  I+ +
Sbjct: 8   HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRR 261
           + IKV+G+VRT+  +P G  DVVS+ +
Sbjct: 68  KNIKVNGRVRTNSHFPVGLFDVVSIEK 94



 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 55/81 (67%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           EKT E FR++Y+V  +F +HRI+ EEA Y+L KV +     + +PY+V+  G +IR+ DP
Sbjct: 93  EKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDP 151

Query: 435 LIKVNDSIQLDIATTKIMDFI 497
            I +  +I++   T+K++++I
Sbjct: 152 AIDLGYTIKISNETSKVIEYI 172


>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
           Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
           Methanopyrus kandleri
          Length = 260

 Score = 83.4 bits (197), Expect = 6e-15
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
           H+KRL AP AW +  K GG +APRP  GPH +   +PL+I +R+ L YA    E  KI+ 
Sbjct: 11  HVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIIT 70

Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSMRR 261
           +  I VDG VR +P +P G MDVV + R
Sbjct: 71  RGEIYVDGVVRKEPKFPVGIMDVVEIPR 98



 Score = 36.3 bits (80), Expect = 0.83
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPD 431
           +T + +R++ +   R  +  I+ EEA+ K+C++K           +  HDG+   +   D
Sbjct: 98  RTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIED 157

Query: 432 P------LIKVNDSIQLDI------ATTKIMDFIKFESGTCV 521
           P      +  V DS+ L++       + K++D I FE G  V
Sbjct: 158 PTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199


>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
           Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
           aerophilum
          Length = 238

 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
           HL+R  AP  W +  K GGV+  RPS GPH L   LPL + +R+ LKYA T +E   I+ 
Sbjct: 3   HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62

Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSM 255
           +  +KVDG VR D  +P G MDV+ +
Sbjct: 63  RGYVKVDGVVRRDYKFPVGLMDVIEI 88


>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
           maquilingensis IC-167|Rep: Ribosomal protein S4E -
           Caldivirga maquilingensis IC-167
          Length = 237

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 34/85 (40%), Positives = 51/85 (60%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HL+R  +P+ W +++ G  ++ +PS GPH     +PL + LR+   YA T  E   I+ +
Sbjct: 3   HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             +KVDGKVR D  YP G MDV+ +
Sbjct: 63  GYVKVDGKVRRDYKYPVGLMDVIEL 87


>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanococcus maripaludis
          Length = 244

 Score = 77.0 bits (181), Expect = 5e-13
 Identities = 37/85 (43%), Positives = 52/85 (61%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRL AP  W L +    +  RPS GPH + + LPL++ +R+ LKYA    E  KI++ 
Sbjct: 9   HLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQT 68

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             I +DG  R +  +PAG MDV+S+
Sbjct: 69  GKILIDGLKRKEYKHPAGLMDVLSI 93



 Score = 37.9 bits (84), Expect = 0.27
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 667
           G L  ITGG+++G    IV  E      DIV +++  G  F T    VFI+G+
Sbjct: 185 GKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237


>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
           Desulfurococcales|Rep: 30S ribosomal protein S4e -
           Aeropyrum pernix
          Length = 253

 Score = 72.9 bits (171), Expect = 8e-12
 Identities = 34/84 (40%), Positives = 50/84 (59%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LK L AP+ W + +    +A +P  GPH   + LPL++ +RN L YA T  E  K++ + 
Sbjct: 10  LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSM 255
             +VDG VR D  +P GFMDV+ +
Sbjct: 70  HFRVDGVVRKDYKFPVGFMDVIEV 93



 Score = 50.0 bits (114), Expect = 6e-05
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           G + +I GGRN+GRVG + S ++  G    +V ++D++G+ F T L+ VF+IG   R  I
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG-LDRPVI 245

Query: 686 SLPRG 700
           SLP G
Sbjct: 246 SLPEG 250


>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
           Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
           central - Thermofilum pendens (strain Hrk 5)
          Length = 251

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 35/83 (42%), Positives = 50/83 (60%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HL+R  AP  W + +   V+  +PS GPH L   +P+ I LR+   YA T  E  +I+  
Sbjct: 11  HLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILAS 70

Query: 181 RLIKVDGKVRTDPTYPAGFMDVV 249
           R+I+VDG+V TD  +P G MDV+
Sbjct: 71  RVIEVDGRVVTDYKFPVGLMDVL 93



 Score = 37.5 bits (83), Expect = 0.36
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 273 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 431
           +R++ D   +     I PEEA YKL +++R  T          HDGR +        Y  
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161

Query: 432 PL-IKVNDSIQLDIATTKIMDFIKFESGT 515
            +  K  D++ + I    I+  + FE GT
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGT 190


>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
           Euryarchaeota|Rep: 30S ribosomal protein S4E -
           Uncultured methanogenic archaeon RC-I
          Length = 234

 Score = 68.5 bits (160), Expect = 2e-10
 Identities = 32/85 (37%), Positives = 48/85 (56%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKR+ AP+ W + +    +  +P  G H     +PLV+ LR+ LK A   +E+ KI+ +
Sbjct: 5   HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             + VDGKVR D  Y  G  D +S+
Sbjct: 65  GKVLVDGKVRKDYRYTVGMFDTISI 89


>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
           Methanobacteriaceae|Rep: Ribosomal protein S4e -
           Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
           861)
          Length = 242

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 44/85 (51%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLK   APK W +      +  +PS G H +   L L + +R+ LK A    E  +I+  
Sbjct: 9   HLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINS 68

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             + VDG+V  D  +P GFMD++ +
Sbjct: 69  GNVLVDGRVIKDYKFPVGFMDIIEI 93



 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 45/88 (51%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KT E++R++ D KGR  +++I  EE   KLCK+   +T       +  HDG+ +   +  
Sbjct: 95  KTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDEND 152

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
             V D I L +   +I +  + + G CV
Sbjct: 153 YNVGDVIDLKVPDHEINEVFELKEGACV 180


>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
           Sulfolobaceae|Rep: 30S ribosomal protein S4e -
           Sulfolobus acidocaldarius
          Length = 244

 Score = 63.7 bits (148), Expect = 5e-09
 Identities = 34/85 (40%), Positives = 45/85 (52%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H+ R  AP    + K    +  R   GPHK++E +PL I L+  LK   T  E  +I+  
Sbjct: 3   HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             + VDGKVR D  YP G MDVV +
Sbjct: 63  GKVLVDGKVRRDYKYPVGLMDVVEI 87


>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
           samples|Rep: Ribosomal protein S4 - uncultured marine
           group II euryarchaeote DeepAnt-JyKC7
          Length = 232

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 28/85 (32%), Positives = 48/85 (56%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H+KRL  P++W L +   ++  +P+ G H    C+PL + LR+ L  A    E  +++  
Sbjct: 5   HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R + VDG++ TD     G MDV+++
Sbjct: 65  RQVLVDGRIETDLGRGVGLMDVLTV 89



 Score = 36.7 bits (81), Expect = 0.63
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 273 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 449
           FR I DV G+     I+ + A  KLC+V   +T       +  HDGR I   D  L    
Sbjct: 94  FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153

Query: 450 DSIQLDIATTKIMDFIKFESG 512
           D++ + +    +     F  G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174


>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
           Methanococcoides burtonii DSM 6242|Rep: Ribosomal
           protein S4E - Methanococcoides burtonii (strain DSM
           6242)
          Length = 236

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 25/85 (29%), Positives = 44/85 (51%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H KR++ PK+W + K    +      GPH   + +PL + LR+ L       E  +++ +
Sbjct: 4   HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             + VDG  R D  +P G MD++++
Sbjct: 64  GNVLVDGVARKDLRFPVGLMDIITI 88


>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 235

 Score = 60.1 bits (139), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 44/85 (51%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H KRL+ PK+W + + G  +      GPH     LPL + +R+ LK      E  +I+ +
Sbjct: 3   HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
             + VDG  R D  +P G  DV+++
Sbjct: 63  GKVLVDGISRKDLRFPVGLFDVITL 87


>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03001139 - Ferroplasma acidarmanus fer1
          Length = 241

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 26/91 (28%), Positives = 50/91 (54%)
 Frame = +1

Query: 7   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
           K + A +   + +    ++  P+   H   + +P++I LR+ LK      E+ +I+   +
Sbjct: 7   KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66

Query: 187 IKVDGKVRTDPTYPAGFMDVVSMRRLMNCFV 279
           +KVDG++  D  +P GFMDV+S+  L N ++
Sbjct: 67  VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97



 Score = 35.5 bits (78), Expect = 1.5
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 279 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 455
           ++YD KG+  I +  P     KL K VK+   G   +  L  HDG+TI      I  +D 
Sbjct: 98  IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156

Query: 456 IQLDIATTKIMDFIKFESG 512
           + + I   +I + +K   G
Sbjct: 157 LLMKIPDLEIENVLKIAEG 175


>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
           Methanocorpusculum labreanum Z|Rep: Ribosomal protein
           S4E, central - Methanocorpusculum labreanum (strain ATCC
           43576 / DSM 4855 / Z)
          Length = 239

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = +1

Query: 7   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
           KR+ AP AW + +    Y    S+GPH     LP+ I+LR+ +++AL   EV KI+  R 
Sbjct: 5   KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63

Query: 187 IKVDGKVRTDPTYPAGFMDVVSMRRL 264
           + ++G + TD        D++S  ++
Sbjct: 64  VLLNGHIVTDEHIGIDVFDIISFPKI 89


>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
           Methanomicrobiales|Rep: Ribosomal protein S4E, central -
           Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
           / JR1)
          Length = 242

 Score = 54.4 bits (125), Expect = 3e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           +LKRL AP +W + K    +  + + GPH     LP+ ++LR  +  A   +EV KI+ Q
Sbjct: 4   YLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQ 62

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRL 264
           R + V+G+   D     G  D+VS+ +L
Sbjct: 63  RDVLVNGRACKDSRMGLGVFDIVSIPKL 90



 Score = 38.7 bits (86), Expect = 0.16
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKA 670
           GN+ MI GG++ G+VG IV   R   S    ++   DS G  F T    VF++G++
Sbjct: 177 GNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRS 232


>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
           Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
           Nanoarchaeum equitans
          Length = 234

 Score = 54.4 bits (125), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
           HL+ L  P+ W +  K  G +  +PS GPH     +P+ ++LR+ L  A    EV  ++ 
Sbjct: 8   HLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLN 67

Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSM 255
              + VDG+   D  +P G  DV+++
Sbjct: 68  NGKVLVDGRPIKDYKFPVGLFDVLAI 93


>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
           Thermoplasma|Rep: 30S ribosomal protein S4e -
           Thermoplasma acidophilum
          Length = 235

 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 30/86 (34%), Positives = 42/86 (48%)
 Frame = +3

Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
           E   E +R++Y+ +G   + + T E A  KL KV+     P N   L THDGRT    D 
Sbjct: 87  EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDK 146

Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
             KV D   + +   KI + IK + G
Sbjct: 147 SKKVGDVWAVSVPDMKISEIIKMQPG 172



 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = +1

Query: 7   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
           KRL   +   + +    + P P+ G H   + + L+  +R+ LK +    E  +I+   L
Sbjct: 6   KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65

Query: 187 IKVDGKVRTDPTYPAGFMDVVSM 255
           +KVDGK   +  +  GFMDV+ +
Sbjct: 66  VKVDGKTVREKKFAVGFMDVIEI 88


>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
           Halobacteriaceae|Rep: 30S ribosomal protein S4E -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 234

 Score = 50.0 bits (114), Expect = 6e-05
 Identities = 24/84 (28%), Positives = 43/84 (51%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H KRL+ P +W +++    +  +   GPH     +PL+I LR+ L YA    E    + +
Sbjct: 4   HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVS 252
             + ++GK  +D   P G  D+++
Sbjct: 63  DNVLINGKAISDEERPVGMFDILA 86


>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
           Bigelowiella natans|Rep: 40S ribosomal protein S4 -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 242

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = +3

Query: 264 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 443
           N+ +R++    G+ T++ I   E   K+CKV ++         ++T D R ++     IK
Sbjct: 96  NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155

Query: 444 VNDSIQLDIATTKIMDFIKFESGT-CV*SR 530
           V DS+ +     +I+  +KFE G+ C+ +R
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITR 185



 Score = 40.3 bits (90), Expect = 0.051
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           H KR+++       K  G++  + S+GPH   + + L+  ++     A    E  K+VK 
Sbjct: 8   HQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKT 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVS 252
             + V+GK      +P   MD +S
Sbjct: 68  GFLYVNGKKCLSHKFPISLMDTIS 91



 Score = 38.7 bits (86), Expect = 0.16
 Identities = 16/62 (25%), Positives = 35/62 (56%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VG+LC+IT G++LG +  I    +      ++H++   G     + +++ +IG+++   +
Sbjct: 177 VGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSIL 236

Query: 686 SL 691
           SL
Sbjct: 237 SL 238


>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
           Picrophilus torridus|Rep: 30S ribosomal protein S4e -
           Picrophilus torridus
          Length = 234

 Score = 46.4 bits (105), Expect = 8e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = +1

Query: 7   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
           K + AP+   + +    +A     G HK    +PL+I LR+ LK      E+ +I+   L
Sbjct: 6   KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65

Query: 187 IKVDGKVRTDPTYPAGFMDVVSM 255
           + VDGKV  +     GFMD +++
Sbjct: 66  VMVDGKVVKERRRGIGFMDTLTV 88



 Score = 33.5 bits (73), Expect = 5.9
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +3

Query: 285 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 464
           YD KG+  I     E    KL +VK           +  HDG T+      IK  DS+ +
Sbjct: 97  YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156

Query: 465 DIATTKIMDFIKFESGTCV 521
            I   +I+D +KF  G  V
Sbjct: 157 KIPKKEIVDVLKFAPGNRV 175


>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
           Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
           symbiosum
          Length = 238

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 26/84 (30%), Positives = 37/84 (44%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKR  AP  W + + G  +      G H     +P  + LR+ L    T  E  K +   
Sbjct: 10  LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSM 255
            ++VDG  RT   +  G MDVV +
Sbjct: 70  NVEVDGVKRTSLHHGIGLMDVVEL 93


>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 197

 Score = 41.9 bits (94), Expect = 0.017
 Identities = 26/68 (38%), Positives = 33/68 (48%)
 Frame = -3

Query: 700 AARQRDVTPSCLADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDH 521
           A  +RD       D EHV + R + ++ GVL VHN EG  + LA  D   A  V  + DH
Sbjct: 40  ALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDH 99

Query: 520 TQVPDSNL 497
            Q  D  L
Sbjct: 100 AQSADVEL 107



 Score = 37.9 bits (84), Expect = 0.27
 Identities = 25/86 (29%), Positives = 45/86 (52%)
 Frame = -2

Query: 515 SSRLKLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVL 336
           S+ ++LD + +L   +V  +G+   D  + + +GAA+++   R+ L          QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161

Query: 335 SLLRGDTVDCESALNIID*TKQFISL 258
                D V  ES+L ++D  + FI+L
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIAL 187


>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
           marine gamma proteobacterium HTCC2143|Rep: Putative
           uncharacterized protein - marine gamma proteobacterium
           HTCC2143
          Length = 110

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 523 DHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGTK 675
           DH R    A   HR  R   RL +   H+G+    L+H++EQ     +G K
Sbjct: 60  DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110


>UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 188

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 453 SIQLDIATTKIMDFIKF-----ESGTCV*SREAVTWGAW-APSCPARDIPAPSTLCTSRT 614
           S +LD   T + DF +      +S +   S     W AW A  CP R +P+P+T  T+ T
Sbjct: 113 SPELDALATHVADFARMLTKLEDSASTPGSTAWTAWTAWTATPCP-RSLPSPATCATTTT 171

Query: 615 PRDTPS 632
           P    S
Sbjct: 172 PSSLDS 177


>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03000514 - Ferroplasma acidarmanus fer1
          Length = 317

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 249 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 85
           +NI +   I  +  N P    E LFH F DFVSG  ++  I +  +  + +AQ +
Sbjct: 58  ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,296,201
Number of Sequences: 1657284
Number of extensions: 17813139
Number of successful extensions: 55421
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 52324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55370
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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