Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0005
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    45   0.002
UniRef50_Q6TVL1 Cluster: ORF109 EEV glycoprotein; n=3; Orf virus...    33   7.4  
UniRef50_Q6L039 Cluster: UDP sulfoquinovose synthase; n=2; Therm...    33   9.8  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = -1

Query: 180 PSDPITFALDAFSSNTRSRLKDLGN 106
           PSDPIT ALD FSSNTRSRL+  GN
Sbjct: 923 PSDPITLALDTFSSNTRSRLRSPGN 947


>UniRef50_Q6TVL1 Cluster: ORF109 EEV glycoprotein; n=3; Orf
           virus|Rep: ORF109 EEV glycoprotein - Orf virus
          Length = 164

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 424 ALQILSCHRRVTFLKYKHMQTKF-SGNYPSTRSCYPRES*LDPFTLANNKTVCVISGQ 594
           AL++  C  + T   Y H   K   G +P  + C  +    DPFTL   K++C   GQ
Sbjct: 55  ALELDKCKEQSTHQDYHHTTNKTCDGLFPENKWCLTK---FDPFTLRQAKSMCTGIGQ 109


>UniRef50_Q6L039 Cluster: UDP sulfoquinovose synthase; n=2;
           Thermoplasmatales|Rep: UDP sulfoquinovose synthase -
           Picrophilus torridus
          Length = 384

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 730 RNALTL*ANTKGNYCIPNIGVPRFSFNPAVHSRRDF 623
           R+A  +   T G Y  PNI +P   FN   H RRD+
Sbjct: 135 RDAHIIKLGTMGEYGTPNIDIPEGFFNIEYHGRRDY 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,731,237
Number of Sequences: 1657284
Number of extensions: 11722779
Number of successful extensions: 25775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25769
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)