Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0078
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38; Eukaryo...    33   8.6  
UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; ...    33   8.6  

>UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38;
           Eukaryota|Rep: UPF0197 protein C11orf10 - Homo sapiens
           (Human)
          Length = 79

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -2

Query: 255 TTSEFT--VYKYLLFYIVALIFVMFNVLFCVLW 163
           T++++T  +YK LL  +VA +F+ F VLF +LW
Sbjct: 42  TSTKYTRDIYKELLISLVASLFMGFGVLFLLLW 74


>UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; Bos
           taurus|Rep: UPF0197 protein C11orf10 homolog - Bos
           taurus (Bovine)
          Length = 79

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -2

Query: 255 TTSEFT--VYKYLLFYIVALIFVMFNVLFCVLW 163
           T++++T  +YK LL  +VA +F+ F VLF +LW
Sbjct: 42  TSTKYTRDIYKELLISLVASLFMGFGVLFLLLW 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,149,012
Number of Sequences: 1657284
Number of extensions: 11189929
Number of successful extensions: 22023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22012
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)