Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17GJ1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q02WZ8 Cluster: Predicted integral membrane protein; n=...    32   7.3  
UniRef50_A1ZVJ2 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_Q55EH3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  

>UniRef50_Q17GJ1 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 204

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = -3

Query: 494 ECV*KKVWTSYCALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMS--KRMLRLRDRLRV 321
           ECV    W S   ++H  EI+ +EI +  + +E   + + NKL+++  +   +L+D+++V
Sbjct: 111 ECVCVDCWYSDGHVEHKDEIVPMEIAYDHFYRETMKTGQSNKLKVNVKEESAKLKDKIKV 170


>UniRef50_Q02WZ8 Cluster: Predicted integral membrane protein; n=3;
           Lactococcus lactis|Rep: Predicted integral membrane
           protein - Lactococcus lactis subsp. cremoris (strain
           SK11)
          Length = 197

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 14  FDITLHTVLITLIGLTIWSPMKIINKNHYDIDHRRNSLDVLFM**LTIINY*KHFRELF 190
           F   + +++ T++ L I  P K I  NHYD     +SL + F+  L +++Y   F + F
Sbjct: 20  FTDAVMSIIATIMVLEIPLP-KFIGTNHYDFRETSSSLIIFFVSFLVVVSYYFQFSKFF 77


>UniRef50_A1ZVJ2 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 335

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 278 IMLIINKWLLETGFQHVIYPVASTYAWTFVTCSFRMKFYFLFDRERNLFPTTESQKNVAG 457
           I LI   WL+ TG+Q  +  V + + W     S    +   + R R LF   +    V  
Sbjct: 187 ISLISRNWLIATGYQRALNNVNNQFLWGKWAGSENFIWAEHYPRSRKLFRGDDFMLRVEY 246

Query: 458 HNNWSRLSF 484
           +  +SR++F
Sbjct: 247 NLRFSRINF 255


>UniRef50_Q55EH3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 584

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 402 LIGKEIYFQQQNLKRMLQGTITGPDFLSHTFNCTANF 512
           +I  E YFQ Q LKR  Q  + G   L++  N T NF
Sbjct: 446 IILSETYFQSQELKRYCQDLLMGLKLLNNNNNNTLNF 482


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,080,095
Number of Sequences: 1657284
Number of extensions: 8663067
Number of successful extensions: 17718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17717
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)