Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0075
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23DA2 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_Q3YT05 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  

>UniRef50_Q23DA2 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1256

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +3

Query: 78  QNKFRSIFIMNKKKTTD*HRTSNSKESSKWT*RKLFAAFVYLNSTSSISVTRHQIVISQE 257
           +N++ S + +N+K +     +SN KES +     +FA F   N  +  SV + Q   SQ 
Sbjct: 233 KNQYLSDYQLNQKASQSSSSSSNKKESLQQPHNNIFAQF--QNQQNQYSVLKSQFPSSQH 290

Query: 258 RQTRLINELSR 290
           +Q +LI E++R
Sbjct: 291 QQQQLI-EINR 300


>UniRef50_Q3YT05 Cluster: Putative uncharacterized protein; n=1;
           Ehrlichia canis str. Jake|Rep: Putative uncharacterized
           protein - Ehrlichia canis (strain Jake)
          Length = 630

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 24/91 (26%), Positives = 42/91 (46%)
 Frame = +3

Query: 231 RHQIVISQERQTRLINELSRKLRQNTSYQCLAFTMFLV*SFI*YDYLNLLIDTTYPTDQA 410
           +++ V S   QT L N+   K RQ +S  C A    ++     + Y  L     +  +Q 
Sbjct: 512 KYKPVSSNNLQTFLTNKSKYKKRQKSSIMCTAIATAILTCLSIFGYNFLATHWKFLAEQQ 571

Query: 411 S*T*IRQTKFEIPLIFFGLGFHASILSSKLE 503
           +   I QT     L+FFG+ F   ++ S+++
Sbjct: 572 NIAKINQTVTLGILVFFGILFIGYVIYSQIK 602


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,682,890
Number of Sequences: 1657284
Number of extensions: 8587036
Number of successful extensions: 13774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13772
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)