Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0050
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.027
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_O76635 Cluster: Putative uncharacterized protein; n=3; ...    33   5.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.1 bits (92), Expect = 0.027
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 269 FIRSFFLLLRCVDKLTAHLVLSRHWNP 349
           F  S FLLLR VD+LTAHLVLS +W+P
Sbjct: 149 FCLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 456 AGWWYLPVQTHIRSYHQ 506
           A WWYLP +TH RSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_O76635 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 356

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 333 VDTGTHRHLQRIYATHLEI*VLRSQYNGCPALQTETHYCFTAGWWYLPVQTHIRSYHQ 506
           ++T  H   +  Y +H+ +      Y  C   Q ET YC    WW  PV  H+  + Q
Sbjct: 295 IETAHHNSFEIFYGSHMAV----DNYKICN--QPETEYCLKGSWWKKPV-AHMYLFDQ 345


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,092,806
Number of Sequences: 1657284
Number of extensions: 14175231
Number of successful extensions: 24561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24560
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)