Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0048
(672 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 144 2e-33
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 142 5e-33
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 118 1e-25
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 111 2e-23
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 103 3e-21
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 102 9e-21
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 97 5e-19
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 89 7e-17
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 89 7e-17
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 85 1e-15
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 82 1e-14
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 81 2e-14
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 77 5e-13
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 75 1e-12
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 70 4e-11
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 69 1e-10
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 65 2e-09
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 64 2e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 60 4e-08
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 60 5e-08
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 52 1e-05
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 51 3e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 49 1e-04
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 49 1e-04
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 3e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 45 0.001
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 42 0.014
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 42 0.014
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 42 0.018
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 42 0.018
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 40 0.041
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.17
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 38 0.22
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 38 0.22
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 38 0.29
UniRef50_Q57V56 Cluster: Putative uncharacterized protein; n=1; ... 36 0.67
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 35 1.6
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 35 2.1
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 34 3.6
UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3; ... 33 6.3
UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG205... 33 8.3
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 144 bits (349), Expect = 2e-33
Identities = 60/84 (71%), Positives = 77/84 (91%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 182
MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 183 RKRCNVNPARGPFHFRAPSKILWK 254
RKRCNVNPARGPFHFRAPS+I +K
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIFYK 84
Score = 102 bits (244), Expect = 9e-21
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+AVRGMIPHKT+RG+ AL RLR +DG P P+D L+ R YC VGRL
Sbjct: 84 KAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRL 143
Query: 431 SHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLR 532
SHE+GW Y+DV++ LE KRK K L R L+
Sbjct: 144 SHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELK 177
Score = 38.3 bits (85), Expect = 0.17
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 508 IAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 609
+ + ++LK++T A E ++KA PF II+SYGY
Sbjct: 170 LKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 142 bits (345), Expect = 5e-33
Identities = 62/84 (73%), Positives = 74/84 (88%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 182
M G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++L
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYL 60
Query: 183 RKRCNVNPARGPFHFRAPSKILWK 254
RKRCNVNPARGPFHFRAPS++LWK
Sbjct: 61 RKRCNVNPARGPFHFRAPSRMLWK 84
Score = 108 bits (260), Expect = 1e-22
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+AVRGM+PHKT+RG NAL+RL+ Y+G P PFD CL+P R +C VGR+
Sbjct: 84 KAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRV 143
Query: 431 SHEIGWKYRDVVRKLEDKRKGKA 499
+HE+GWKYRDVV LE KRK K+
Sbjct: 144 AHEVGWKYRDVVNNLEAKRKIKS 166
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 118 bits (285), Expect = 1e-25
Identities = 52/78 (66%), Positives = 64/78 (82%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 201 NPARGPFHFRAPSKILWK 254
NP RGPFHFR+P++ILW+
Sbjct: 64 NPRRGPFHFRSPARILWR 81
Score = 94.3 bits (224), Expect = 2e-18
Identities = 41/91 (45%), Positives = 57/91 (62%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGMIPHKT RG AL RL+ ++G PPP+D LKPGR +C +GRL+
Sbjct: 83 IRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLAT 142
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW++ D+V +LE+KRK K+ K+ L
Sbjct: 143 EVGWRHSDLVTRLEEKRKTKSAAFYARKKTL 173
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 111 bits (266), Expect = 2e-23
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLR
Sbjct: 5 SGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKILW+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKILWR 87
Score = 90.2 bits (214), Expect = 4e-17
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGMIPHKT+RG AL RL+ Y+G PPP+D L+ G YC +G+LS
Sbjct: 89 IRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
E+GW + D +++LEDKRK +A
Sbjct: 149 EVGWNHYDTIKELEDKRKERA 169
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 103 bits (248), Expect = 3e-21
Identities = 47/79 (59%), Positives = 59/79 (74%)
Frame = +3
Query: 18 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 197
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 198 VNPARGPFHFRAPSKILWK 254
NP RG HFRAPS+I W+
Sbjct: 135 HNPRRGVQHFRAPSRIFWR 153
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +2
Query: 254 AVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 433
AVRGM+PHKT +G AL RL+ ++G P P+D L+ R C +G LS
Sbjct: 154 AVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLS 213
Query: 434 HEIGWKYRDVVRKLEDKRKGKA 499
+GW + ++ KLE+KR+ +A
Sbjct: 214 ASVGWGKQTLIEKLEEKRRARA 235
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 102 bits (244), Expect = 9e-21
Identities = 48/77 (62%), Positives = 61/77 (79%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 201 NPARGPFHFRAPSKILW 251
NP+RGP+ F+APS+I W
Sbjct: 64 NPSRGPYRFQAPSRIFW 80
Score = 48.8 bits (111), Expect(2) = 3e-05
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +2
Query: 392 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 499
LKP R + ++GRL+H++GWKY+ V LE+ RK KA
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKA 133
Score = 21.4 bits (43), Expect(2) = 3e-05
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2
Query: 260 RGMIPHKT 283
RGM+PHKT
Sbjct: 84 RGMLPHKT 91
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 96.7 bits (230), Expect = 5e-19
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 207 ARGPFHFRAPSKI 245
+GPFH RAPS +
Sbjct: 85 TKGPFHHRAPSDV 97
Score = 56.4 bits (130), Expect = 6e-07
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +2
Query: 248 MEAVRGMIPHKTERGKNALRRLRTYDGCPPPF-DNXXXXXXXXXXXXFCLKPGRNYCHVG 424
+ VR M+P T+RG AL L Y+G PP C + R Y +G
Sbjct: 99 VRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLG 158
Query: 425 RLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLR 532
+ +GWKY DVV LE R KA + + LR
Sbjct: 159 NMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLR 194
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 89.4 bits (212), Expect = 7e-17
Identities = 37/78 (47%), Positives = 57/78 (73%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 201 NPARGPFHFRAPSKILWK 254
NP RGPFHF++PSKIL++
Sbjct: 62 NPRRGPFHFKSPSKILYQ 79
Score = 49.2 bits (112), Expect = 9e-05
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+ ++ MIPHKT RG AL+ L+ ++G P F +K R ++G++
Sbjct: 79 QTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAFRYKVIKNYRKTVNLGKV 138
Query: 431 SHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLR 532
+GWK R + + D+ L K+ ++
Sbjct: 139 CEVLGWKNRKFIEQKSDQLAALGKVVLKKKKEIK 172
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 89.4 bits (212), Expect = 7e-17
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = +3
Query: 18 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 197
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 198 VNPARGPFHFRAPSKILWK 254
NP +GP+H+ +PS++ WK
Sbjct: 62 TNPKKGPYHYTSPSRLFWK 80
Score = 69.3 bits (162), Expect = 8e-11
Identities = 32/91 (35%), Positives = 47/91 (51%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+ VRGM+PHKT RG A R + Y+G P P+D L G +C +G
Sbjct: 80 KTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEALKVLRLGEGHRFCVLGDF 139
Query: 431 SHEIGWKYRDVVRKLEDKRKGKAVKRLPMKR 523
+IGWK+ +V++LE KR+ A + K+
Sbjct: 140 CEQIGWKHGAIVKELEAKRQTAASEYWAQKK 170
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 207 ARGPFHFRAPSKIL 248
RGPFHFRAP++I+
Sbjct: 64 LRGPFHFRAPAEIV 77
Score = 76.6 bits (180), Expect = 5e-13
Identities = 34/77 (44%), Positives = 45/77 (58%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGMIP+KT RG +A+ RLR YDG PP CL+P R C VGR++H
Sbjct: 81 IRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERRRCEVGRVAH 140
Query: 437 EIGWKYRDVVRKLEDKR 487
EIGW++ V + E +R
Sbjct: 141 EIGWQHAADVERYEKRR 157
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +3
Query: 15 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 194
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 195 NVNPARGPFHFRAPSKILWK 254
N NP RG FH R+P++++ K
Sbjct: 68 NTNPTRGAFHHRSPAEMVRK 87
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 81.0 bits (191), Expect = 2e-14
Identities = 40/73 (54%), Positives = 48/73 (65%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 207 ARGPFHFRAPSKI 245
GPFH RAP +I
Sbjct: 65 RDGPFHQRAPHEI 77
Score = 67.3 bits (157), Expect = 3e-10
Identities = 34/106 (32%), Positives = 54/106 (50%)
Frame = +2
Query: 254 AVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 433
AVRGMIP+KT RG +A L+ Y+G P + + + R +GRLS
Sbjct: 81 AVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRCVSIHTDRPTTKLGRLS 140
Query: 434 HEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKR 571
+GWKY +VV +LE++RK ++ K K+ + + + K+
Sbjct: 141 TTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDKRAAAIEKVNKQ 186
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 76.6 bits (180), Expect = 5e-13
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+LS
Sbjct: 63 VRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSK 122
Query: 437 EIGWKYRDVVR 469
E+GW Y D +R
Sbjct: 123 EVGWNYYDTIR 133
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +V+D R H+L RLA++IAK LL G +VV
Sbjct: 5 SGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVV------------------------- 39
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
R N P+ GP HFR+P+KILW+
Sbjct: 40 -RMNTKPSHGPIHFRSPAKILWR 61
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 207 ARGPFHFRAPSKILWKL 257
RGPFHFR P L K+
Sbjct: 67 RRGPFHFREPRMHLAKI 83
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/91 (29%), Positives = 42/91 (46%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+R MI +K RGK A+ RL TY+G P + + P R Y +G+L
Sbjct: 84 IRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPNR-YVTLGKLLS 142
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
GWK+ + + L D+ K + K++L
Sbjct: 143 MFGWKHAEAAKSLTDELKERESLASLQKKDL 173
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 70.1 bits (164), Expect = 4e-11
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = +3
Query: 51 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 230
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 231 APSKILWKL*EV*SHTKQSVARMLLGGYVHM 323
+ L HT+ SVAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +2
Query: 389 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRK 568
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + R ++ + ++ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 569 R 571
+
Sbjct: 64 Q 64
Score = 42.3 bits (95), Expect = 0.010
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 520 KKLKRITKDAGEKVSKATTPFTTIIQSYGYH 612
+K+KR+TK A +K+ K P+T +I+SYGY+
Sbjct: 48 RKMKRLTKKASKKIEKQVAPYTAVIKSYGYN 78
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +3
Query: 15 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 194
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 195 NVNPARGPFHFRAPSKILWKL 257
+NP GP H+R P I+ K+
Sbjct: 70 IINPKHGPVHYRRPDTIITKM 90
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 209
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 210 RGPFHFRAPSKILWKL 257
GP+H R P I+ ++
Sbjct: 61 HGPYHPRRPDTIMTRM 76
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGM+P K GK A RLR Y G P + +P NY + L
Sbjct: 77 IRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAE---ITRPTANYTTMADLGE 133
Query: 437 EIGW 448
+GW
Sbjct: 134 TVGW 137
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 60.5 bits (140), Expect = 4e-08
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSF 179
M+G +AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L +
Sbjct: 1 MSG-KEEAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRW 59
Query: 180 LRKRCNVNP-ARGPFHFRAPSKILWKL 257
+ + NP RGP + + P ++ ++
Sbjct: 60 VEWKTYYNPELRGPKYPKTPDRLFKRM 86
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 201 NPARGPFHFRAPSKILWKL 257
NP +GP+ F PS +L K+
Sbjct: 63 NPNKGPYFFSNPSSLLKKI 81
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVN 203
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 204 PARGPFHFRAPSKIL 248
P RGPF+ + +I+
Sbjct: 61 PRRGPFYPKRSDEIV 75
Score = 42.7 bits (96), Expect = 0.008
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGM+P KT+RG+ A RRL+ Y G P F + +P Y VG ++
Sbjct: 79 IRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KYVTVGEVAK 136
Query: 437 EIGWKY 454
+G K+
Sbjct: 137 FLGGKF 142
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 209
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 210 RGPFHFRAPSKI 245
+GPF+ R P I
Sbjct: 74 KGPFYPRRPDLI 85
Score = 40.3 bits (90), Expect = 0.041
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGM+P KT+RG+ A +RLR Y G P + Y +G LS
Sbjct: 90 VRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHLWYVTLGELSE 149
Query: 437 EIGWK 451
E+G++
Sbjct: 150 ELGYQ 154
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 209
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 210 RGPFHFRAPSKI 245
+GP+ R P +I
Sbjct: 75 KGPYFPRHPERI 86
Score = 36.7 bits (81), Expect = 0.51
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCP 334
VRGM+P K+ RG++A RRLR + G P
Sbjct: 91 VRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 146
+ G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
Score = 41.5 bits (93), Expect = 0.018
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 254 AVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 433
AVRGM+P RG+ AL RLR Y G P D + +Y +G ++
Sbjct: 88 AVRGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRFPEADASRLSSHYIELGAVA 144
Query: 434 HEIGWK 451
++GWK
Sbjct: 145 RQLGWK 150
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 287 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 439
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK---- 188
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 189 RCNVNPAR-GPFHFRAPSKILWKL 257
R + NP + GP R P ++ ++
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRI 99
Score = 36.7 bits (81), Expect = 0.51
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCP 334
VRGM+P K+E G++AL+RLR Y P
Sbjct: 100 VRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 41.9 bits (94), Expect = 0.014
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
I ID H+ GRL++ +AK LL G + +V ++ I+G R + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 207 ARGPFHFRAPSKIL 248
+GP++ + +IL
Sbjct: 59 RKGPYYPKTADRIL 72
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 41.9 bits (94), Expect = 0.014
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 207 ARGPFHFRAPSKIL 248
GP+ + P +IL
Sbjct: 60 EFGPYFPKRPDRIL 73
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
+RGM+P+K RG++A+ RL+ Y G P++ L Y +G +S
Sbjct: 77 IRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMRLLSSNKYVELGEVSQ 134
Query: 437 EIGWKY 454
++G K+
Sbjct: 135 KMGSKF 140
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 41.5 bits (93), Expect = 0.018
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
+V+D R +LGR+++ +A+ +L+G V VV E+ I+G N+ M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 207 ARGPFHFRAPSKI 245
GP++ + P +I
Sbjct: 66 DSGPYYPKRPDRI 78
Score = 37.1 bits (82), Expect = 0.39
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 254 AVRGMIPHKTERGKNALRRLRTYDGCP 334
A+RGM+P+KTE G+ AL +R Y G P
Sbjct: 82 AIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 41.5 bits (93), Expect = 0.018
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
T + ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG R L
Sbjct: 3 TQVQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLT 62
Query: 186 KRCNVNPAR-GPFHFRAPSKIL 248
+ NP R G R+P I+
Sbjct: 63 VKTLFNPYRNGIRRPRSPINIV 84
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 40.3 bits (90), Expect = 0.041
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 207 AR-GPFHFRAPSKIL 248
+ GP + R P I+
Sbjct: 62 KKMGPKYPRRPDDIV 76
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.3 bits (85), Expect = 0.17
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 143
+++D +LGR++ IAK+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 37.9 bits (84), Expect = 0.22
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRK 188
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 189 RCNVNPARGPFHFRAPSKIL 248
+P +GPF R P IL
Sbjct: 64 YKLNHPRKGPFFPRMPDMIL 83
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 37.9 bits (84), Expect = 0.22
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 431 SHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKR 571
+HE+GW+Y+ +V KLE+KRK K K+ R + + + +
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAK 47
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 37.5 bits (83), Expect = 0.29
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 206
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDIGN 65
Query: 207 ARGPFHFRAPSKI 245
G F+ + P I
Sbjct: 66 DNGYFYPKRPDGI 78
Score = 35.1 bits (77), Expect = 1.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCP 334
+RGM+PHK +RG+ A +R Y G P
Sbjct: 83 IRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_Q57V56 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 814
Score = 36.3 bits (80), Expect = 0.67
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +2
Query: 458 DVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIRTKKFYKN 637
++ RK ++ K R+ R + SPR+L RR SLPS PM T R K +
Sbjct: 620 ELARKRPEEPKPVPTPRVSTSRPISISPRLLARR-EPPPPESLPSFRPMITPRAKGVECS 678
Query: 638 KPFW 649
KPF+
Sbjct: 679 KPFY 682
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 27 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNK 161
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++NK
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK 47
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -2
Query: 158 VPKEVARDIDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 18
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 33.9 bits (74), Expect = 3.6
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 265 TSYSFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRR 86
+S FHR L+W+ R+G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 16 SSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 33.9 bits (74), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCP 334
+RGM+P KT RG+ L+ ++ Y G P
Sbjct: 81 IRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 258
Score = 33.1 bits (72), Expect = 6.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 404 RNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKR--NLRGSPRMLVRRCRKRQH 577
R CH ++S +G+KYR+ +R + + A R KR L S R++ RC H
Sbjct: 7 RAXCHSIKISPSVGYKYREALRTISQVKTWSAKFRRCTKRAAKLLRSKRLVPHRCEVGFH 66
>UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG20539;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG20539 - Caenorhabditis
briggsae
Length = 668
Score = 32.7 bits (71), Expect = 8.3
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = -2
Query: 482 CLQAYEQHHGISIQFHGT-VCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHM--YV 312
CL Y HHG Q HGT HD + H E GTHH Y
Sbjct: 450 CLAYYGTHHGTHDQSHGTHGGYHDPAHHGTHHATHYESHGTHGGYHDPAHHGTHHATHYE 509
Query: 311 AS*EHSCHALFCVGSY 264
+ H H+L G++
Sbjct: 510 SHGTHGHHSLAYYGTH 525
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,396,763
Number of Sequences: 1657284
Number of extensions: 14145940
Number of successful extensions: 36365
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 35187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36338
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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