Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0031
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000150A76F Cluster: hypothetical protein TTHERM_0058...    34   2.9  
UniRef50_A2EZ29 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_Q2HHZ0 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_UPI000150A76F Cluster: hypothetical protein
           TTHERM_00585290; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00585290 - Tetrahymena
           thermophila SB210
          Length = 369

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 275 RAKNLTFPVLKNIKGYIRIDTRFISFKDKVK 367
           + KNL  P +  + GY +ID +F ++KDK+K
Sbjct: 196 KIKNLDIPNIARVMGYSKIDKKFPTYKDKLK 226


>UniRef50_A2EZ29 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 223

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 360 LSLNEIKRVSILIYPLIFFSTGNVKFFARPVRSPVEVSYVCAIDNHHNT 214
           +SLNE     +LIY  +F+      FF     S V V   C+++N++ T
Sbjct: 6   ISLNEKANFKVLIYENVFYKGSGTMFFHDVYDSIVVVDKFCSLENYNLT 54


>UniRef50_Q2HHZ0 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 1407

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -3

Query: 303 STGNVKFFARPVRSPVEVSYVCAIDNHHNTYIQT-----KSINKICRKLHWYFFNIYSSI 139
           ST  +K F + + S +E++YV  +   H T+++      K I    R LH    NI  SI
Sbjct: 772 STNYLKVFVQQIPSDLEMTYVLLVSRIHETHLEAASKLLKLILGSSRPLHLDEINIAFSI 831

Query: 138 PLQSRITRALKGD 100
               R  + +K D
Sbjct: 832 ATNHRTAKDVKED 844


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,464,952
Number of Sequences: 1657284
Number of extensions: 10191511
Number of successful extensions: 22899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22887
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)