Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2B7Y2 Cluster: Putative uncharacterized protein; n=1; ...    38   0.31 
UniRef50_UPI00006CD8B7 Cluster: hypothetical protein TTHERM_0052...    36   1.2  
UniRef50_Q0URB8 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q9KVQ7 Cluster: DNA recombination protein rmuC homolog;...    33   5.0  
UniRef50_Q53GJ9 Cluster: Amino acid transporter variant; n=24; E...    33   6.6  
UniRef50_UPI00015B94F0 Cluster: UPI00015B94F0 related cluster; n...    33   8.8  
UniRef50_Q0VQM2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  
UniRef50_Q6GV70 Cluster: Envelope protein; n=1; Oikopleura dioic...    33   8.8  
UniRef50_Q2UF82 Cluster: Predicted protein; n=1; Aspergillus ory...    33   8.8  
UniRef50_O95661 Cluster: GTP-binding protein Di-Ras3; n=5; Euthe...    33   8.8  

>UniRef50_Q2B7Y2 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 542

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 25/110 (22%), Positives = 50/110 (45%)
 Frame = +2

Query: 260 GPQNKSIIADVKGTIVRQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHD 439
           GP    II++V GT +  +    HP  + S+ T   +  F+     +   N I + + H 
Sbjct: 193 GPDTSLIISEVIGTAIDIKLQEAHPNIIGSRYTDDFEFYFKTQSEAEKVLNTIQEIVRH- 251

Query: 440 AMMQLHIVDSKDGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELA 589
             + ++ V ++  SSP L++ +W   + +  +R +    +  +K  F  A
Sbjct: 252 FELDINPVKTEIISSPNLLEPIWLSNLKLYQFRSSATAQKNDIKTFFSTA 301


>UniRef50_UPI00006CD8B7 Cluster: hypothetical protein
           TTHERM_00522330; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00522330 - Tetrahymena
           thermophila SB210
          Length = 1719

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 346 PNIKGMFRMVPLPHYRAFHICYYGLILRSMC-GSIYQPSKTGLISFAD 206
           PNI+ +F+M+ + +  +F+   +   L + C GSIYQ SKTG+  + D
Sbjct: 612 PNIEEIFKMLCISNPTSFNEKEFDFFLNNWCIGSIYQHSKTGVQIYID 659


>UniRef50_Q0URB8 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 197

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 104 ADFDLISALGTWHVVAIIPEKLFPDKDVTCYKMEISETDEAGLRWLINRTTHGPQNKSII 283
           A FDL S LGTW+ VA  P    P     C     +  D   +R ++N  T G  ++SI+
Sbjct: 49  AKFDLESYLGTWYQVAGTP--FGPTAGARCISGNYALNDNGTIR-VVNTATRGNASRSIV 105


>UniRef50_Q9KVQ7 Cluster: DNA recombination protein rmuC homolog;
           n=34; Gammaproteobacteria|Rep: DNA recombination protein
           rmuC homolog - Vibrio cholerae
          Length = 513

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 194 YKMEISETDEAGLRWLINRTTHGPQNKSIIADVKGTIVR-QRY-HTE 328
           Y+ ++S  +EAG R+  +   H PQNK ++ D K  +V  +RY H E
Sbjct: 273 YQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAE 319


>UniRef50_Q53GJ9 Cluster: Amino acid transporter variant; n=24;
           Euteleostomi|Rep: Amino acid transporter variant - Homo
           sapiens (Human)
          Length = 462

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  FQADFDLISALGTWHVVAIIPEK-LFPDKDVT 190
           FQ     +SA+GTW+V AI+  K ++PDK++T
Sbjct: 199 FQKYASFLSAVGTWYVTAIVIIKYIWPDKEMT 230


>UniRef50_UPI00015B94F0 Cluster: UPI00015B94F0 related cluster; n=1;
           unknown|Rep: UPI00015B94F0 UniRef100 entry - unknown
          Length = 538

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 376 ASFDSSRRLRPNIKGMFRMVPLPHYRAFHICYYGLILRSMCGSIY 242
           A+FD+    RP   G++R V   H+ A  +C   LIL S+ GS+Y
Sbjct: 90  AAFDAVAAARPAQDGIYRAVWRWHFYAGLLCLPFLILLSVTGSLY 134


>UniRef50_Q0VQM2 Cluster: Putative uncharacterized protein; n=1;
           Alcanivorax borkumensis SK2|Rep: Putative
           uncharacterized protein - Alcanivorax borkumensis
           (strain SK2 / ATCC 700651 / DSM 11573)
          Length = 438

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 194 YKMEISETDEAGLRWLINRTTHGPQNKSIIADVKGTIV 307
           Y+ +++  DE+G R L +   H P+NK ++ D K ++V
Sbjct: 217 YETQVTLKDESGQRRLPDAIVHLPENKDVVIDAKVSLV 254


>UniRef50_Q6GV70 Cluster: Envelope protein; n=1; Oikopleura
           dioica|Rep: Envelope protein - Oikopleura dioica
           (Tunicate)
          Length = 652

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 95  YFQADFDLISALGTWHVVAIIPEKLFPDKDVTCYKMEISETDE 223
           YF  +  +++ LGT H V  +P  L  + D+  Y  E+SET +
Sbjct: 354 YFSTEIPVLTTLGTPHFVRSVPVPLLQENDIFFY--EVSETPQ 394


>UniRef50_Q2UF82 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 267

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 191 CYKMEISETDE--AGLRWLI--NRTTHGPQNKSIIADVKGTIVRQRYHTEHPFDVWSKST 358
           CY  E+S++ E     +W +  N+T   P+ +++  ++ G  V   Y  +H   +W K  
Sbjct: 154 CYDAELSDSLEKLVDWKWYLDRNKTQPVPKEEALQGELDGLYVSWEYSVQHCVYMWEKMH 213

Query: 359 AGIKG 373
            G+ G
Sbjct: 214 RGLLG 218


>UniRef50_O95661 Cluster: GTP-binding protein Di-Ras3; n=5;
           Eutheria|Rep: GTP-binding protein Di-Ras3 - Homo sapiens
           (Human)
          Length = 229

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 443 MMQLHIVDSK--DGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRG 604
           ++ LHI DSK  DG+      ++      V+VY   +  T E+LK  +EL  KI+G
Sbjct: 84  VLSLHITDSKSGDGNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,940,531
Number of Sequences: 1657284
Number of extensions: 14482327
Number of successful extensions: 34048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34044
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)