Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.018
UniRef50_A3SKG7 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q1AZL6 Cluster: Serine/threonine protein kinase; n=1; R...    32   4.7  
UniRef50_A6WF17 Cluster: Diguanylate cyclase/phosphodiesterase; ...    32   6.3  
UniRef50_A0C6Q4 Cluster: Chromosome undetermined scaffold_153, w...    31   8.3  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 40.3 bits (90), Expect = 0.018
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = -1

Query: 343  FRGKIIRLWNEVSSSTVFPERYEGSFFNR 257
            F  + IRLWNE+ S TVFPERY+ SFF R
Sbjct: 934  FLPRTIRLWNELPS-TVFPERYDMSFFKR 961


>UniRef50_A3SKG7 Cluster: Putative uncharacterized protein; n=1;
           Roseovarius nubinhibens ISM|Rep: Putative
           uncharacterized protein - Roseovarius nubinhibens ISM
          Length = 446

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 27/92 (29%), Positives = 41/92 (44%)
 Frame = +2

Query: 86  PGSPGRLYCLVDRQAFEDCNGRRAYGPSDDEWSLMLKDISNQEYS*TAAFTLEVIRSSIK 265
           P +  RL+  V+R  F+   G R Y  S D+W  M K+   +  +     T E+  S+  
Sbjct: 212 PPTLRRLFNCVERDGFDFDLGGRFYCSSSDDWMEMPKE-ERKHITIDGEATTEIDVSASH 270

Query: 266 KGPLIALGKHGRGRDFVPKPDDFSSKPLQVSK 361
              L A+  HG   D+V  P + +  P  V K
Sbjct: 271 LFILYAI--HGERLDYVSDPYNVAEYPRDVVK 300


>UniRef50_Q1AZL6 Cluster: Serine/threonine protein kinase; n=1;
           Rubrobacter xylanophilus DSM 9941|Rep: Serine/threonine
           protein kinase - Rubrobacter xylanophilus (strain DSM
           9941 / NBRC 16129)
          Length = 277

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 38  SERKTSKGIDLXIARGPGSPGRLYCLVDRQAFEDCNGRRAYGPSDDEWSL 187
           SER  +K +DL IAR PG   R    +   A E   G    GP+ D W +
Sbjct: 151 SERGFAKILDLSIARPPGRARRGGGTLQYMAPEQVRGGGLLGPATDVWGI 200


>UniRef50_A6WF17 Cluster: Diguanylate cyclase/phosphodiesterase;
           n=1; Kineococcus radiotolerans SRS30216|Rep: Diguanylate
           cyclase/phosphodiesterase - Kineococcus radiotolerans
           SRS30216
          Length = 761

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 65  DLXIARGPGSPGRLYCLVDRQAFEDCNGRRAYGPSDD 175
           DL  +RGPG PG     VD   F+  N    +G  D+
Sbjct: 347 DLTASRGPGGPGVHLLFVDLDGFKRVNDTHGHGAGDE 383


>UniRef50_A0C6Q4 Cluster: Chromosome undetermined scaffold_153,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_153,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 922

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 104 LYC--LVDRQAFEDCNGRRAYGPSDDEWSLMLKDISNQ 211
           LYC  ++D Q F+  NG   Y   DDE +++L DIS Q
Sbjct: 359 LYCHQILDSQQFQ-INGTIFYSNGDDELTIILSDISKQ 395


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,816,583
Number of Sequences: 1657284
Number of extensions: 8051856
Number of successful extensions: 20172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20168
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)