Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0006
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    35   1.4  
UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldola...    33   4.4  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_UPI0000F1EFBB Cluster: PREDICTED: similar to G protein-...    32   7.7  
UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whol...    32   7.7  

>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 30/109 (27%), Positives = 46/109 (42%)
 Frame = -1

Query: 342 PQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 163
           PQ D V DT++ +PD +   +L R+  PL A       D AV           L E    
Sbjct: 10  PQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTETHRG 62

Query: 162 WHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTARSQ 16
           W AH L +    + +  F  +I  L TN+   ++  +   ++   AR Q
Sbjct: 63  WQAHDLPELD-FERLMAFAVAIATL-TNQSVSTEHPLLSALLPDNARLQ 109


>UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldolase;
           n=1; Planctomyces maris DSM 8797|Rep:
           2-dehydro-3-deoxyphosphooctonate aldolase - Planctomyces
           maris DSM 8797
          Length = 563

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 174 IRNLWHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTA 25
           + NL   H   +   I G+FCF   I      E+ PS ++  KE  +GTA
Sbjct: 3   LSNLIRRHSAPRLGMISGVFCFALLISISGCKEQTPSSSTANKEKSQGTA 52


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -1

Query: 279 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 139
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


>UniRef50_UPI0000F1EFBB Cluster: PREDICTED: similar to G
           protein-coupled receptor 64; n=2; Danio rerio|Rep:
           PREDICTED: similar to G protein-coupled receptor 64 -
           Danio rerio
          Length = 1099

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 24/111 (21%), Positives = 48/111 (43%)
 Frame = -1

Query: 357 SSPDTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLP 178
           ++P TP    + +T +  P+ S  N       P + RNT  +  S+ GY+ +  T T + 
Sbjct: 68  TTPTTPTKMPLTETTSTPPNMSTTNPETTLTTPPQTRNTGTSPFSSSGYTTSPETST-IS 126

Query: 177 EIRNLWHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTA 25
           ++  +  +H+     R    F    +I ++  N   P  T++    +  T+
Sbjct: 127 KLTGITTSHETTTTSRFT-TFTEATTISSVTKNTSSPETTTISTSTVNTTS 176


>UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF11541, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 444

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 338 CGVSGELFWSFNSLIRIHFNST-PDSKSICMY 430
           CGVSG ++  FN  + + F+S  P   S+C+Y
Sbjct: 202 CGVSGSVWVHFNHTVSVQFHSPWPGRNSLCLY 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,416,108
Number of Sequences: 1657284
Number of extensions: 7759022
Number of successful extensions: 19151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19149
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)