Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0010
         (830 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22W49 Cluster: Putative uncharacterized protein; n=1; ...    38   0.41 
UniRef50_A7TJA9 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_O16530 Cluster: Patched related family protein 3; n=2; ...    34   5.0  
UniRef50_Q2Z050 Cluster: Putative uncharacterized protein; n=3; ...    33   6.6  

>UniRef50_Q22W49 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1068

 Score = 37.5 bits (83), Expect = 0.41
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
 Frame = -1

Query: 668  NYIPDSVXLPFNII*RY---LKIIESF---LQLPKWTVSKLLISISNKNVRRIDFDVNAL 507
            N+  +++ L  ++   Y    KII+SF   LQ  K +V +L  ++ N N+  ++F +   
Sbjct: 689  NFFKNTIDLTLDMSNNYKLPYKIIKSFFNELQCLKNSVKRLHFNLQNSNISEVEF-ICLY 747

Query: 506  IFIK*IYYLDSRRTFILDYLLQ-T*LFV-LNLHHPA-NISIKEQYA*CEFLNVFDSVKVN 336
            + +  I +L  +  F L  LL+ T  +  L LHH   NI  KE Y   +F  + + +K N
Sbjct: 748  LSVSHIPHLTVKYDFELSNLLRITDSYSRLFLHHLGENILDKEMYR-IKFTYLLNLLKQN 806

Query: 335  SYLYAHGTAPLAANVG 288
             Y + H       N G
Sbjct: 807  PYSFTHAAINFYYNYG 822


>UniRef50_A7TJA9 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 612

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 362 NVFDSVKVNSYLYAHGTAPLAANVGKHCCNSV----RRVNAYSREYNKIIQISSFRIKTV 195
           +V   ++ + Y   HG   L +N+ K C N++    + VNAY       + + S +  T 
Sbjct: 293 SVDPGIRTSIYNSRHGNVNLWSNIVKECLNNINESNQNVNAYLMSVQTYLNLDSSKTPTE 352

Query: 194 *SQNFKLILQESVL 153
             QNF  I  E VL
Sbjct: 353 GKQNFVDIQNEDVL 366


>UniRef50_O16530 Cluster: Patched related family protein 3; n=2;
           Caenorhabditis|Rep: Patched related family protein 3 -
           Caenorhabditis elegans
          Length = 914

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +1

Query: 214 DDICIILLYSLLYALTRRTELQQCLPTFAARGAVPCAYKYELTFTLSKTLRNSH*AYCSL 393
           D +  I  Y  L A+  R E++Q L T   +  +P +     T +   ++R+S    C  
Sbjct: 433 DFVFTITFYGALMAVVGRYEIEQELKT---QKPLPESESPSETSSTG-SMRSSELDDCKF 488

Query: 394 IDMLAG*CKFSTNNYVCS 447
             M+A  CKF TN +VCS
Sbjct: 489 RRMIANVCKFLTNTWVCS 506


>UniRef50_Q2Z050 Cluster: Putative uncharacterized protein; n=3;
           uncultured bacterium|Rep: Putative uncharacterized
           protein - uncultured bacterium
          Length = 524

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 209 EKTIFVLFCYILCY--TH*LAALNYSNVYLRLPLGALFHAHT 328
           EKT+  LFC  LC+   H + A+ +   Y+++P   L   +T
Sbjct: 439 EKTVLFLFCVFLCFAIAHTITAVGFMYYYIKMPFLILLSGYT 480


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,165,873
Number of Sequences: 1657284
Number of extensions: 10287867
Number of successful extensions: 20482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20479
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)