Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XMS0 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   1.9  
UniRef50_Q4YR24 Cluster: Putative uncharacterized protein; n=1; ...    31   5.7  
UniRef50_Q9PQ80 Cluster: Hypothetical membrane lipoprotein; n=1;...    31   9.9  
UniRef50_A0LQI4 Cluster: Putative uncharacterized protein; n=1; ...    31   9.9  

>UniRef50_Q9XMS0 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=5; Tetrahymena|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Tetrahymena pyriformis
          Length = 755

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 147 YIFQPCFFGFICVSIVACQPCFFGFICVSIVCSVGLRIGYYLYFIPLS 4
           Y+   CF  F+C+  ++  P   GF  +  +  +GL   YY+Y+I LS
Sbjct: 552 YLPFECFASFVCMINLSGLPLTLGFY-IKHLLFIGLNESYYIYYIILS 598


>UniRef50_Q4YR24 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 131

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 126 FGFICVSIVACQPCFFGFIC--VSIVCSVGLRIGYYLYFI 13
           +GF  + I+ C P FF F C  +S++   G+++  YLY++
Sbjct: 27  YGFAFLFILYCAPLFFIFACIQISVLTKYGVKV-LYLYWV 65


>UniRef50_Q9PQ80 Cluster: Hypothetical membrane lipoprotein; n=1;
           Ureaplasma parvum|Rep: Hypothetical membrane lipoprotein
           - Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
          Length = 306

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 178 GRTRSPVLLTIHFSAMFLWFYLCINRSLPAMFFWFYLCIN 59
           G   +P+  ++HF      FYL +N       +W Y+ I+
Sbjct: 166 GDKPNPIYFSLHFYLCLFGFYLFVNTRKTIKIYWIYIIIH 205


>UniRef50_A0LQI4 Cluster: Putative uncharacterized protein; n=1;
           Syntrophobacter fumaroxidans MPOB|Rep: Putative
           uncharacterized protein - Syntrophobacter fumaroxidans
           (strain DSM 10017 / MPOB)
          Length = 335

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 105 IVACQPCFFGFICVSIVCSVGLRIGYYLYFIP 10
           + +C P    ++  +I+CS+ + IG+ L  +P
Sbjct: 210 LFSCTPLVLSYVIATIICSLAVGIGFMLLIVP 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,908,143
Number of Sequences: 1657284
Number of extensions: 5749249
Number of successful extensions: 12820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12772
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)