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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0109
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   145   7e-34
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   142   9e-33
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   140   2e-32
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   140   4e-32
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   139   6e-32
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   138   8e-32
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   138   1e-31
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   137   2e-31
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...   132   7e-30
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   132   9e-30
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   130   2e-29
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   130   4e-29
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   129   7e-29
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   128   1e-28
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   127   2e-28
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   126   6e-28
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   124   2e-27
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...   116   7e-25
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   114   2e-24
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   114   2e-24
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...   109   4e-23
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...   108   1e-22
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   107   2e-22
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...   106   4e-22
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...   106   5e-22
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...    99   5e-20
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...    99   8e-20
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    99   1e-19
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...    98   1e-19
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...    97   4e-19
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    96   7e-19
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...    95   1e-18
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...    95   2e-18
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...    95   2e-18
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...    94   2e-18
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...    90   5e-17
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...    90   5e-17
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...    87   3e-16
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec...    87   5e-16
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...    86   8e-16
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...    85   1e-15
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...    85   1e-15
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...    84   2e-15
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...    82   1e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    82   1e-14
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    82   1e-14
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    82   1e-14
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    82   1e-14
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...    81   2e-14
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    81   2e-14
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...    81   2e-14
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...    81   3e-14
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...    79   9e-14
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...    79   9e-14
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    79   1e-13
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...    79   1e-13
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    78   2e-13
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...    78   2e-13
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    78   2e-13
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...    77   3e-13
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    77   4e-13
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    77   5e-13
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    76   9e-13
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    74   3e-12
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    74   3e-12
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...    73   5e-12
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    73   6e-12
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    72   1e-11
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    71   2e-11
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    71   2e-11
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    71   2e-11
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    71   3e-11
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    70   4e-11
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    70   6e-11
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    69   1e-10
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    68   2e-10
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    68   2e-10
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    68   2e-10
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...    68   2e-10
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    66   5e-10
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...    66   5e-10
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    64   2e-09
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    64   4e-09
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    63   5e-09
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    61   3e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    59   8e-08
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    57   3e-07
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    56   1e-06
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    52   1e-05
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    52   1e-05
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...    50   5e-05
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    48   1e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    48   2e-04
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br...    46   6e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di...    46   0.001
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha...    44   0.002
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    42   0.010
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach...    38   0.21 
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    36   0.85 
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu...    36   1.1  
UniRef50_A3H8Y4 Cluster: Cytochrome-c oxidase precursor; n=1; Ca...    34   2.6  
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C...    34   3.4  
UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    33   6.0  
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    33   6.0  

>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  145 bits (352), Expect = 7e-34
 Identities = 68/79 (86%), Positives = 74/79 (93%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV +V +TAF LLLSLPVLAGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 183 RLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFG 242

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFGIISHI+
Sbjct: 243 HPEVYILILPGFGIISHIV 261



 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 33/65 (50%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F              +VE G+GTG TVYPPLS   +H G +VDLAIFSLHL
Sbjct: 96  AFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHL 155

Query: 194 AGISS 208
           +G+SS
Sbjct: 156 SGVSS 160



 Score = 36.3 bits (80), Expect = 0.64
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH+FT G+D+DTRAYFT
Sbjct: 292 HHMFTVGLDVDTRAYFT 308


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  142 bits (343), Expect = 9e-33
 Identities = 64/79 (81%), Positives = 73/79 (92%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV A+ +TA  LLLSLPVLAGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFG
Sbjct: 180 KLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFG 239

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+PGFG++SHI+
Sbjct: 240 HPEVYILIIPGFGMVSHIV 258



 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 36/65 (55%), Positives = 39/65 (60%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL
Sbjct: 93  AFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHL 152

Query: 194 AGISS 208
           +GISS
Sbjct: 153 SGISS 157



 Score = 33.1 bits (72), Expect = 6.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++  G+D+DTRAYFT
Sbjct: 289 HHMYAVGLDVDTRAYFT 305


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  140 bits (340), Expect = 2e-32
 Identities = 66/79 (83%), Positives = 71/79 (89%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q PLFV AV +TA  LLLSLPVLA  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFG
Sbjct: 180 QTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFGIISH++
Sbjct: 240 HPEVYILILPGFGIISHVV 258



 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 118 VEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157



 Score = 40.7 bits (91), Expect = 0.030
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +3

Query: 501 SYYSQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           +YY+   GKKE FG                    HH+FT G+D+DTRAYFT
Sbjct: 259 AYYA---GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFT 306


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  140 bits (338), Expect = 4e-32
 Identities = 66/80 (82%), Positives = 73/80 (91%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           D++ LF  +V ITA  LLLSLPVLAGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FF
Sbjct: 163 DKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFF 222

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYILILPGFGIISH+I
Sbjct: 223 GHPEVYILILPGFGIISHMI 242



 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 30/65 (46%), Positives = 35/65 (53%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           +F R+  + F               +  G GTG TVYPPLS  + H G SVDL IFSLHL
Sbjct: 77  SFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHL 136

Query: 194 AGISS 208
           AG SS
Sbjct: 137 AGASS 141



 Score = 44.4 bits (100), Expect = 0.002
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +3

Query: 516 ERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           E GKKETFG                    HH+FT G+D+DTRAYFT
Sbjct: 245 ESGKKETFGMLGMIYAMLTIGFLGFIVWAHHMFTIGMDVDTRAYFT 290


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  139 bits (336), Expect = 6e-32
 Identities = 66/79 (83%), Positives = 71/79 (89%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q PLFV +V ITA  LLLSLPVLA  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFG
Sbjct: 180 QTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFG+ISHI+
Sbjct: 240 HPEVYILILPGFGMISHIV 258



 Score = 66.9 bits (156), Expect = 4e-10
 Identities = 34/65 (52%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + F              +VE GAGTG TVYPPL+ N +H G SVDL IFSLHL
Sbjct: 93  AFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHL 152

Query: 194 AGISS 208
           AG+SS
Sbjct: 153 AGVSS 157



 Score = 42.7 bits (96), Expect = 0.007
 Identities = 24/59 (40%), Positives = 29/59 (49%)
 Frame = +3

Query: 477 FTRIWYNFSYYSQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           F  I +  +YYS   GKKE FG                    HH+FT G+D+DTRAYFT
Sbjct: 251 FGMISHIVTYYS---GKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFT 306


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  138 bits (335), Expect = 8e-32
 Identities = 65/79 (82%), Positives = 71/79 (89%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q PLFV +V ITA  LLLSLPVLA  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFG
Sbjct: 181 QTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 240

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFG+ISH++
Sbjct: 241 HPEVYILILPGFGMISHVV 259



 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 38/65 (58%), Positives = 42/65 (64%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + F               VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHL
Sbjct: 94  AFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHL 153

Query: 194 AGISS 208
           AGISS
Sbjct: 154 AGISS 158


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  138 bits (334), Expect = 1e-31
 Identities = 64/79 (81%), Positives = 71/79 (89%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q PLFV +V +TA  LLLSLPVLA  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFG
Sbjct: 180 QTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFG+ISH++
Sbjct: 240 HPEVYILILPGFGMISHVV 258



 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 118 VEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157



 Score = 41.5 bits (93), Expect = 0.017
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = +3

Query: 477 FTRIWYNFSYYSQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           F  I +  +YY+   GKKE FG                    HH+FT G+D+DTRAYFT
Sbjct: 251 FGMISHVVTYYA---GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFT 306


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  137 bits (332), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 73/79 (92%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV ++ +TAF LLL++PVLAGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFG
Sbjct: 188 RIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFG 247

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFG+ISHI+
Sbjct: 248 HPEVYILILPGFGMISHIV 266



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F              +VE G GTG TVYPPLSS  +H G +VDLAIFSLH+
Sbjct: 101 AFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHI 160

Query: 194 AGISS 208
           +G SS
Sbjct: 161 SGASS 165



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+D+DTRAYFT
Sbjct: 297 HHMYTVGLDVDTRAYFT 313


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score =  132 bits (319), Expect = 7e-30
 Identities = 59/79 (74%), Positives = 71/79 (89%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLF  +V +TA+ LLLSLPVLAGAIT+LLTDRN  T+FFDPAGGGDPIL+QH+F FFG
Sbjct: 286 KVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFG 345

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ILP FG+ISHI+
Sbjct: 346 HPEVYIVILPAFGVISHIV 364



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + +              +++ GAG G T YPP+S+      R+VD AIF++H+
Sbjct: 199 AFPRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHV 258

Query: 194 AGISS 208
           +G SS
Sbjct: 259 SGASS 263


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  132 bits (318), Expect = 9e-30
 Identities = 62/69 (89%), Positives = 65/69 (94%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           DQ+PLF+ AVGITA  LLLSLPVLAGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FF
Sbjct: 152 DQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFF 211

Query: 451 GHPEVYILI 477
           GHPEVYILI
Sbjct: 212 GHPEVYILI 220



 Score = 79.4 bits (187), Expect = 7e-14
 Identities = 42/65 (64%), Positives = 44/65 (67%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHL
Sbjct: 66  AFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHL 125

Query: 194 AGISS 208
           AGISS
Sbjct: 126 AGISS 130


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  130 bits (315), Expect = 2e-29
 Identities = 59/79 (74%), Positives = 70/79 (88%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV ++ ITAF LLLSLPVL+  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG
Sbjct: 181 KLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG 240

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+PGFGIISH++
Sbjct: 241 HPEVYILIIPGFGIISHVV 259



 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 37/65 (56%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  I F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+LHL
Sbjct: 94  AFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHL 153

Query: 194 AGISS 208
             ISS
Sbjct: 154 TSISS 158


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  130 bits (313), Expect = 4e-29
 Identities = 59/79 (74%), Positives = 68/79 (86%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV A+ ITAF LLLSLPVL+  IT+LL DRN NTSFF+ AGGGDPI YQH F FFG
Sbjct: 181 KMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFG 240

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+PGFGI+SHI+
Sbjct: 241 HPEVYILIIPGFGIVSHIV 259



 Score = 66.9 bits (156), Expect = 4e-10
 Identities = 37/65 (56%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           +F RI  I F              +VE+GAGTG TVYPPLSS  AH G SVDLAIFSLHL
Sbjct: 94  SFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHL 153

Query: 194 AGISS 208
             ISS
Sbjct: 154 TSISS 158


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  129 bits (311), Expect = 7e-29
 Identities = 56/78 (71%), Positives = 69/78 (88%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           LPLFV +V +T+F +++++PVLA AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGH
Sbjct: 185 LPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGH 244

Query: 457 PEVYILILPGFGIISHII 510
           PEVYILILPGFG++SHII
Sbjct: 245 PEVYILILPGFGLVSHII 262



 Score = 56.0 bits (129), Expect = 7e-07
 Identities = 27/39 (69%), Positives = 28/39 (71%)
 Frame = +2

Query: 92  ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           E G GTG TVYPPLSS  +H G SVDL IFS HL GI S
Sbjct: 123 EGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGS 161


>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  128 bits (309), Expect = 1e-28
 Identities = 69/114 (60%), Positives = 75/114 (65%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           DQ+PLFV AVGITAF LLLSLPVLAGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FF
Sbjct: 176 DQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFF 235

Query: 451 GHPEVYILILPGFGIISHIIHXXXXXXXXXXXXXXFMLY*QLGY*DLLXELIIY 612
           GHP++             +                FM    L Y DLL ELI+Y
Sbjct: 236 GHPKLMFSFSQDLVSFHMLFPKKVEKSKLLVVSVSFMQSWLLVYSDLLFELIMY 289



 Score = 79.4 bits (187), Expect = 7e-14
 Identities = 42/65 (64%), Positives = 44/65 (67%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHL
Sbjct: 90  AFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHL 149

Query: 194 AGISS 208
           AGISS
Sbjct: 150 AGISS 154


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  127 bits (307), Expect = 2e-28
 Identities = 59/79 (74%), Positives = 69/79 (87%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV +V +TAF LLL+LPVLA AIT+LLTDRN  T+F+D AGGGDP LYQHLF FFG
Sbjct: 223 KMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWFFG 282

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ILPGFGIIS I+
Sbjct: 283 HPEVYIMILPGFGIISQIV 301



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 95  NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           NGAGTG TVY PLS++    G +VD+AI SLH+AG SS
Sbjct: 164 NGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASS 200


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  126 bits (303), Expect = 6e-28
 Identities = 62/79 (78%), Positives = 67/79 (84%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +L LF  AV ITA  LLLSLPVLAG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFG
Sbjct: 181 KLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFG 240

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+PGFGIIS  I
Sbjct: 241 HPEVYILIIPGFGIISTTI 259



 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           +ENG GTG T+YPPLS   +H G SVDLAIF LHL+GISS
Sbjct: 119 IENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGISS 158



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+D+DTRAYFT
Sbjct: 290 HHMYTVGLDVDTRAYFT 306


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  124 bits (299), Expect = 2e-27
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +L LF  AV ITA  LLLSLPVLA AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFG
Sbjct: 207 KLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFG 266

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+PGFGIIS +I
Sbjct: 267 HPEVYILIIPGFGIISTVI 285



 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 29/65 (44%), Positives = 36/65 (55%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + +              I+ENG GTG T+YPPLS   +H    VDL IF LHL
Sbjct: 120 AFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHL 179

Query: 194 AGISS 208
           +GISS
Sbjct: 180 SGISS 184



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+D+DTRAYFT
Sbjct: 316 HHMYTVGLDVDTRAYFT 332


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score =  116 bits (278), Expect = 7e-25
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +1

Query: 283 LFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 462
           + V A   T+  LLLSLPVLA  IT+LL DRN  T+FF+P+GGGDPIL+QHLF FFGHPE
Sbjct: 273 IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPE 332

Query: 463 VYILILPGFGIISHI 507
           VY+LILPGFGI+SHI
Sbjct: 333 VYVLILPGFGIVSHI 347



 Score = 39.1 bits (87), Expect = 0.091
 Identities = 21/37 (56%), Positives = 24/37 (64%)
 Frame = +2

Query: 98  GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           G G G T+YPPLS      G  VD  +FSLHLAG+SS
Sbjct: 217 GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  114 bits (274), Expect = 2e-24
 Identities = 51/79 (64%), Positives = 66/79 (83%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV +V ITA  ++L+LPVLA  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFG
Sbjct: 198 KLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFG 257

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+P FG++S I+
Sbjct: 258 HPEVYILIVPVFGVVSQIV 276



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  + F              +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL
Sbjct: 111 AFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHL 170

Query: 194 AGISS 208
           +G+SS
Sbjct: 171 SGLSS 175


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  114 bits (274), Expect = 2e-24
 Identities = 51/79 (64%), Positives = 66/79 (83%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV +V ITA  ++L+LPVLA  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFG
Sbjct: 198 KLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFG 257

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+P FG++S I+
Sbjct: 258 HPEVYILIVPVFGVVSQIV 276



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  + F              +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL
Sbjct: 111 AFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHL 170

Query: 194 AGISS 208
           +G+SS
Sbjct: 171 SGLSS 175


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score =  109 bits (263), Expect = 4e-23
 Identities = 49/80 (61%), Positives = 63/80 (78%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           DQ+ +FV    +T+F L+LS+PVLAG++  LL DRN NTSF+D   GG+P+LYQHLF FF
Sbjct: 189 DQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFF 248

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVY++ILP FGIIS  +
Sbjct: 249 GHPEVYVIILPVFGIISEAV 268



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+DIDTR YF+
Sbjct: 300 HHMYTAGLDIDTRTYFS 316


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score =  108 bits (260), Expect = 1e-22
 Identities = 48/76 (63%), Positives = 62/76 (81%)
 Frame = +1

Query: 283 LFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 462
           LF+ A  ITA  L+++LPVLAG +T++L DRN NTSF+D  GGGD IL+QH+F FFGHPE
Sbjct: 186 LFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPE 245

Query: 463 VYILILPGFGIISHII 510
           VYI++LP FG+IS I+
Sbjct: 246 VYIILLPVFGLISTIV 261



 Score = 37.1 bits (82), Expect = 0.37
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +2

Query: 17  FXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 196
           F R+  + F              + E G G G T+YP L     H   + D  +F++HL 
Sbjct: 97  FPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLL 156

Query: 197 GISS 208
           GISS
Sbjct: 157 GISS 160


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  107 bits (257), Expect = 2e-22
 Identities = 51/61 (83%), Positives = 55/61 (90%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV AV ITA  LLLSLPVLAGAIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F G
Sbjct: 99  RMPLFVWAVEITAILLLLSLPVLAGAITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXG 158

Query: 454 H 456
           H
Sbjct: 159 H 159



 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           VE GAGTG TV PPLS+NIAH G SVDLAIFSLH+AG+ S
Sbjct: 37  VEKGAGTGWTVSPPLSANIAHEGSSVDLAIFSLHMAGVXS 76


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score =  106 bits (255), Expect = 4e-22
 Identities = 48/69 (69%), Positives = 56/69 (81%)
 Frame = +1

Query: 304 ITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 483
           IT+  LLL+LPVL G + +LL+D + NT FFDP   GDPILYQHLF FFGHPEVYILILP
Sbjct: 196 ITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILP 255

Query: 484 GFGIISHII 510
            FG+ISH+I
Sbjct: 256 AFGVISHVI 264



 Score = 36.7 bits (81), Expect = 0.49
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92  ENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISS 208
           E G GTG T+YPPLS+++      +VD+ IF L ++G++S
Sbjct: 124 EFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVAS 163



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+++DTRAYFT
Sbjct: 295 HHMYTTGLEVDTRAYFT 311


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score =  106 bits (254), Expect = 5e-22
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = +1

Query: 280 PLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 459
           P+ +  +  T+  L+ S+PVLA  +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHP
Sbjct: 185 PMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHP 244

Query: 460 EVYILILPGFGIISHII 510
           EVYILILP FG+ISHI+
Sbjct: 245 EVYILILPAFGVISHIL 261



 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +2

Query: 98  GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           G G G T+YPPLS++    G  +DLA+FSLH+AG+SS
Sbjct: 123 GLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159



 Score = 35.9 bits (79), Expect = 0.85
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH+F  G+DIDTRAYFT
Sbjct: 293 HHMFVAGLDIDTRAYFT 309


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =   99 bits (238), Expect = 5e-20
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV +V ITA  LLLSLPVLAGAIT+LLTDR  NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 181 RIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240



 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 36/65 (55%), Positives = 41/65 (63%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F              +VE GAGTG TVYPPL+S  AH G SVD+AIFSLHL
Sbjct: 94  AFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHL 153

Query: 194 AGISS 208
           AG+SS
Sbjct: 154 AGLSS 158


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score = 99.1 bits (236), Expect = 8e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 441
           +LPLFV A+ +TA  LLLSLPVLAGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 180 KLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235



 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 36/65 (55%), Positives = 39/65 (60%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL
Sbjct: 93  AFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHL 152

Query: 194 AGISS 208
           +GISS
Sbjct: 153 SGISS 157


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score = 98.7 bits (235), Expect = 1e-19
 Identities = 45/78 (57%), Positives = 59/78 (75%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           L LF  ++ + +  L+LSLPVLA  IT++LTD++L T F+D   GGDP+LYQHLF FFGH
Sbjct: 165 LSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGH 224

Query: 457 PEVYILILPGFGIISHII 510
           PEVY++ILP FG+ S  I
Sbjct: 225 PEVYVVILPVFGLFSSSI 242



 Score = 36.7 bits (81), Expect = 0.49
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +2

Query: 101 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           A  G T YPPLSS       SV+ ++FSLHLAGI+S
Sbjct: 112 ASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143



 Score = 35.5 bits (78), Expect = 1.1
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+DIDTR+YFT
Sbjct: 273 HHMYTAGLDIDTRSYFT 289


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score = 98.3 bits (234), Expect = 1e-19
 Identities = 42/72 (58%), Positives = 56/72 (77%)
 Frame = +1

Query: 295 AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 474
           ++ +T+F LLLSLPV+     ++  DR+ NT FF+ +  GDP+LYQHLF FFGHPEVYI+
Sbjct: 193 SIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIM 252

Query: 475 ILPGFGIISHII 510
           ILPGFGIIS ++
Sbjct: 253 ILPGFGIISLLL 264



 Score = 40.7 bits (91), Expect = 0.030
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           +E G+GTG T+YPPLS+++++ G  +D  IF L  AGI+S
Sbjct: 126 LEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIAS 163


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score = 96.7 bits (230), Expect = 4e-19
 Identities = 43/53 (81%), Positives = 48/53 (90%)
 Frame = +1

Query: 352 ITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 510
           IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS  I
Sbjct: 232 ITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIISTTI 284



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIF 181
           AF R+  I F              I+E G GTG T+    YPPLS   +H G SVDLAIF
Sbjct: 122 AFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIF 181

Query: 182 SLHLAGISS 208
           +LHL+G+SS
Sbjct: 182 ALHLSGVSS 190



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH++T G+D+DTRAYFT
Sbjct: 349 HHMYTVGLDVDTRAYFT 365


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score = 95.9 bits (228), Expect = 7e-19
 Identities = 44/78 (56%), Positives = 57/78 (73%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +PLF  A+  T+  +LLS PVLA A+ +L  D    TSFF+P GGGDP++YQHLF F+ H
Sbjct: 192 MPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSH 251

Query: 457 PEVYILILPGFGIISHII 510
           P VYI+ILP FG+IS +I
Sbjct: 252 PAVYIMILPFFGVISEVI 269


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score = 95.5 bits (227), Expect = 1e-18
 Identities = 46/53 (86%), Positives = 48/53 (90%)
 Frame = +1

Query: 283 LFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 441
           LFV +V ITA  LLLSLPVLAGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 166 LFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218



 Score = 71.7 bits (168), Expect = 1e-11
 Identities = 37/65 (56%), Positives = 41/65 (63%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  + F               VE+GAGTG TVYPPLS N AH G SVDLAIFSLHL
Sbjct: 76  AFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHL 135

Query: 194 AGISS 208
           AG+SS
Sbjct: 136 AGVSS 140


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 41/80 (51%), Positives = 61/80 (76%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           D++PLFV ++ +T+F ++L++P +  A T L+ DR + T FF+PA GGD +L+QHLF FF
Sbjct: 195 DRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFF 254

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYI+ LP  G++S I+
Sbjct: 255 GHPEVYIIFLPAVGMVSSIV 274


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV ++ ITAF LLLSLPVL+  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG
Sbjct: 181 KLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG 240

Query: 454 HPEVYILIL 480
                I++L
Sbjct: 241 QTVATIIML 249



 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 37/65 (56%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  I F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+LHL
Sbjct: 94  AFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHL 153

Query: 194 AGISS 208
             ISS
Sbjct: 154 TSISS 158


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score = 94.3 bits (224), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 58/79 (73%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV  + + A  ++L+LP L  A+ +LL DR L ++FFDP  GG  +L+QH F  FG
Sbjct: 199 RVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFG 258

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILPGFG+IS +I
Sbjct: 259 HPEVYILILPGFGMISEVI 277


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score = 89.8 bits (213), Expect = 5e-17
 Identities = 44/80 (55%), Positives = 55/80 (68%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           +++PLFV    + AF L+ + PVL  A   LL DR+  T FF P  GGD +L+QHLF FF
Sbjct: 197 NRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFF 256

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYILILP  GIIS ++
Sbjct: 257 GHPEVYILILPTMGIISEVL 276


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score = 89.8 bits (213), Expect = 5e-17
 Identities = 42/60 (70%), Positives = 50/60 (83%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV A+ ITA  LLL+LPVL+  +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 181 KLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240



 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 35/65 (53%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  I F              +VE+GAGTG TVYPPL+S  AH G SVDLAIF+LH+
Sbjct: 94  AFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHM 153

Query: 194 AGISS 208
             ISS
Sbjct: 154 TSISS 158


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 42/70 (60%), Positives = 52/70 (74%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           + +PLF  AV  TA  LLLSLPVLA  +T+ + DRN NTSFF+ AGGGD +LYQHLF ++
Sbjct: 185 ENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWW 244

Query: 451 GHPEVYILIL 480
            HPEV I+ L
Sbjct: 245 NHPEVKIICL 254



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 32/65 (49%), Positives = 38/65 (58%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F              +VE GAGTG TVY PL+   +H G +VDLAIFSLHL
Sbjct: 99  AFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHL 158

Query: 194 AGISS 208
           +G SS
Sbjct: 159 SGFSS 163


>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
           Echinoida|Rep: Cytochrome c oxidase subunit I -
           Echinometra oblonga
          Length = 386

 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +1

Query: 376 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 510
           N  T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVI 235



 Score = 39.9 bits (89), Expect = 0.052
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +3

Query: 477 FTRIWYNFSYYSQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           F  I +  ++YS   GK+E FG                    HH+FT G+D+DTRAYFT
Sbjct: 228 FGMISHVIAHYS---GKREPFGYLGMVYAMIAIGVLGFLVWAHHMFTVGMDVDTRAYFT 283


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score = 85.8 bits (203), Expect = 8e-16
 Identities = 40/69 (57%), Positives = 53/69 (76%)
 Frame = +1

Query: 304 ITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 483
           +T+  L+ SLP+L  AIT LL DRN+N++ +D  G  DP+LYQHLF FFGHPEVY++ILP
Sbjct: 202 VTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILP 259

Query: 484 GFGIISHII 510
            FG+ S I+
Sbjct: 260 VFGLTSLIL 268



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +2

Query: 107 TG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISS 208
           +G T+YPPLS+  A   G ++DL++  +H+ GISS
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISS 169


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score = 85.4 bits (202), Expect = 1e-15
 Identities = 41/71 (57%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV +V ITA  ++L+LPVLA  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFG
Sbjct: 198 KLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFG 257

Query: 454 H--PEVYILIL 480
              P + I+I+
Sbjct: 258 QIWPIIIIIII 268



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  + F              +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL
Sbjct: 111 AFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHL 170

Query: 194 AGISS 208
           +G+SS
Sbjct: 171 SGLSS 175


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score = 85.0 bits (201), Expect = 1e-15
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+FV          L+ LP L G   +LL D +  TSFF P GGGDP+L+QH F F+ 
Sbjct: 206 RMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYS 265

Query: 454 HPEVYILILPGFGIISHI 507
           HP VY+L+LP FGI S +
Sbjct: 266 HPAVYVLVLPVFGIFSEL 283


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score = 84.2 bits (199), Expect = 2e-15
 Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FF 450
           ++PLFV A+  T+   +L+ PV+ G + +L+T  NL     FDPA GGDP+L+QHLF F+
Sbjct: 206 KMPLFVWAIYATSCIQVLATPVI-GLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFY 264

Query: 451 GHPEVYILILPGFGIISHII 510
            HP VYI++LP FG++S ++
Sbjct: 265 SHPAVYIMVLPSFGVMSEVV 284


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHL 438
           +LPL +  + +TA    L +PVL  A  +LL DR+  T FF        GGGDPIL+QHL
Sbjct: 213 RLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHL 272

Query: 439 F*FFGHPEVYILILPGFGIISHII 510
           F  FGHPEVYI+ILP +GI+  ++
Sbjct: 273 FWIFGHPEVYIMILPAWGILGDVL 296



 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 101 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           AG G T Y PLS+N+   G    L + ++ + G+SS
Sbjct: 155 AGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSS 190


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 38/78 (48%), Positives = 52/78 (66%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +P    ++ +T   L    PVL  A+ ++  DR+  T+FF+ A GGDPIL QHLF FFGH
Sbjct: 342 MPFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGH 401

Query: 457 PEVYILILPGFGIISHII 510
           PEVY+LI+P FG I+ I+
Sbjct: 402 PEVYVLIIPTFGFINMIV 419


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +1

Query: 322 LLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 501
           L+ +P LAGA+T+L  D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG  S
Sbjct: 152 LVGVPSLAGAVTMLFLDKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYS 211

Query: 502 HII 510
            II
Sbjct: 212 EII 214


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 51/79 (64%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++PLFV     TA  +++++P L   +     +R   T FFD A GG P+L+Q LF FFG
Sbjct: 178 KMPLFVWGFFTTAILMIIAMPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFG 237

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILP  G++S ++
Sbjct: 238 HPEVYILILPAMGLVSELL 256


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 35/79 (44%), Positives = 52/79 (65%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLF     + +  +L + P L   + +++ DR   T+FF+P  GG+ ++++HLF  FG
Sbjct: 189 RLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFG 248

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILP FGI S +I
Sbjct: 249 HPEVYILILPAFGIFSEVI 267


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 39/64 (60%), Positives = 48/64 (75%)
 Frame = +1

Query: 319 LLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 498
           +L + P+L  AI +LL DRN  TSFF  AG G  IL+QHLF FFGHPEVYI++LP  GII
Sbjct: 282 ILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGII 339

Query: 499 SHII 510
           S+I+
Sbjct: 340 SYIL 343


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 81.0 bits (191), Expect = 2e-14
 Identities = 39/80 (48%), Positives = 54/80 (67%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           +++P+FV AV + +F ++ +LP L  A  +L  DR     FF  A  GDPIL+QHLF FF
Sbjct: 202 NRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFF 260

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYI+ +P  G++S II
Sbjct: 261 GHPEVYIIFIPALGMVSSII 280


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score = 81.0 bits (191), Expect = 2e-14
 Identities = 36/64 (56%), Positives = 47/64 (73%)
 Frame = +1

Query: 319 LLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 498
           +L + P+   A+ +LL DRN  T+FF  AGG DPI +QHLF FFGHPEVY+L+LP  GI+
Sbjct: 250 ILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIV 308

Query: 499 SHII 510
           S I+
Sbjct: 309 SLIL 312


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score = 80.6 bits (190), Expect = 3e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)
 Frame = -3

Query: 207 DEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLI*X 28
           +E PAKC+EKI  STD P CAI   SGG TVHPVP P STI L  + ++EGG +QNL+  
Sbjct: 78  EETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLF 137

Query: 27  IRXNA 13
           IR NA
Sbjct: 138 IRGNA 142



 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 36/54 (66%), Positives = 42/54 (77%)
 Frame = -1

Query: 440 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNXNAVIPTAHTNKG 279
           NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+  AV  T  TN G
Sbjct: 1   NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSG 53


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score = 79.0 bits (186), Expect = 9e-14
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV ++  T+   +L+ PVL  ++ ++  +       FDPA GGDP+L+QH F F+ 
Sbjct: 199 RLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYS 258

Query: 454 HPEVYILILPGFGIISHII 510
           HP VYI++LP   +IS ++
Sbjct: 259 HPAVYIMVLPAMAVISEVV 277


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score = 79.0 bits (186), Expect = 9e-14
 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF 441
           + LF  +V   +  ++ +LP LA    +LL +R+L   FF     DPA  GDP L+QH+F
Sbjct: 186 MSLFAWSVLAASMLMVTALPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIF 245

Query: 442 *FFGHPEVYILILPGFGIISHII 510
            FFGHPEVYIL+LP  G++S +I
Sbjct: 246 WFFGHPEVYILVLPAMGLVSEVI 268


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 10/89 (11%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDP----AG------GGDPI 423
           +LPL + A  ITA   LLS PVL  A  +L+ DR+L TSFF      AG      GG P+
Sbjct: 232 RLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALHHQGGSPV 291

Query: 424 LYQHLF*FFGHPEVYILILPGFGIISHII 510
           L+QHLF F GHPEVYI+++P  GI S +I
Sbjct: 292 LFQHLFWFLGHPEVYIVLIPALGITSEVI 320


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F   + + +   LL  P+L  A   +L DR L    +DPA GG  +L+QHLF FFG
Sbjct: 206 RMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFG 264

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVY+L LP FGI+S II
Sbjct: 265 HPEVYVLALPFFGIVSEII 283


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 35/79 (44%), Positives = 51/79 (64%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+FV    +T+  ++ + P +  A+ +L+ DR    +FF+   GG  + YQHLF  FG
Sbjct: 200 KMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFG 259

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILILP  GIIS +I
Sbjct: 260 HPEVYILILPAMGIISEVI 278


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 42/74 (56%), Positives = 55/74 (74%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPLFV +V ITA  ++L+LPVLA  +T+LL DRN NTSFF  +GGGDP+LY+H+  F+ 
Sbjct: 198 KLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYK 255

Query: 454 HPEVYILILPGFGI 495
           +P V ILI    GI
Sbjct: 256 NP-VLILIWLTSGI 268



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF RI  + F              +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL
Sbjct: 111 AFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHL 170

Query: 194 AGISS 208
           +G+SS
Sbjct: 171 SGLSS 175


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 43/89 (48%), Positives = 52/89 (58%), Gaps = 10/89 (11%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPA----------GGGDPI 423
           +LPL V  +       LL+ P L     +LL DR L TSFF P           GGG P+
Sbjct: 210 RLPLTVWGIFTATVMALLAFPALFVGSVMLLLDRLLGTSFFMPTLVEMGQLSKYGGGSPL 269

Query: 424 LYQHLF*FFGHPEVYILILPGFGIISHII 510
           L+QHLF FFGHPEVYI+ LP FGI+S +I
Sbjct: 270 LFQHLFWFFGHPEVYIVALPAFGIVSDLI 298


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 35/52 (67%), Positives = 37/52 (71%)
 Frame = +3

Query: 375 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYSQERGKK 530
           K KYIIF S W     F+STFILIFWT  SLYFNFT IWYNFSYY   + KK
Sbjct: 7   KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYYFPSKSKK 58



 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 27/51 (52%), Positives = 33/51 (64%)
 Frame = +2

Query: 497 FLILFTRKRKKRNFWLFRNNLCYTSNWVIRIYXLSSSYIHWRYRY*YTSIF 649
           F   F  K KK N W+F +NLCY SNW+I IY LSSSYI+    Y Y++ F
Sbjct: 48  FSYYFPSKSKKGNLWVFSDNLCYISNWIISIYCLSSSYIYSSNSYWYSTYF 98


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 77.0 bits (181), Expect = 4e-13
 Identities = 35/79 (44%), Positives = 53/79 (67%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q+PL   +   ++  +L++LP  A A+ +LLTDR   + FF+PA GGDPI Y HLF F  
Sbjct: 182 QVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTF 241

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVY+L++P  G++  ++
Sbjct: 242 HPEVYVLVIPAIGMMYEMV 260


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 76.6 bits (180), Expect = 5e-13
 Identities = 34/79 (43%), Positives = 52/79 (65%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F  A+ I A  ++++ P +  A  +L  +R+    FF    GGDP+L+QHLF FFG
Sbjct: 206 RMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFG 265

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ LP  G++S I+
Sbjct: 266 HPEVYIIFLPAAGLVSMIV 284


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 75.8 bits (178), Expect = 9e-13
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDP-----------AGGGDP 420
           +LPL + A+ ITA     +LPVL  A  ++L DR + T FF P           AGGG P
Sbjct: 218 RLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVNNSPMAAGGGQP 277

Query: 421 ILYQHLF*FFGHPEVYILILPGFGIISHII 510
           +L+QHLF F+ HP VYI+ILP  G++S I+
Sbjct: 278 LLWQHLFWFYSHPAVYIMILPAMGMVSDIL 307


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 73.7 bits (173), Expect = 3e-12
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAG-----------GGDP 420
           ++P+   A  IT+   LL+  VL  A  +L  DR   TSFF P+G           GG  
Sbjct: 217 RMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAGTSFFIPSGLVFNDHVIPHGGGSA 276

Query: 421 ILYQHLF*FFGHPEVYILILPGFGIISHII 510
           +L+QHLF FFGHPEVYI ILP  GI+SHI+
Sbjct: 277 LLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 73.7 bits (173), Expect = 3e-12
 Identities = 34/77 (44%), Positives = 49/77 (63%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           D+LP+ V      +   L+++P ++ A  +L  DRN  T FFD A GG P+L+QHLF  F
Sbjct: 215 DRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMF 274

Query: 451 GHPEVYILILPGFGIIS 501
            HP VY+++LP  GI+S
Sbjct: 275 AHPWVYVVVLPAMGIVS 291


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FF 450
           ++P+F  ++  T   +L + P L     +LL DRNL T FF +PAGG   +L+ HLF FF
Sbjct: 189 KMPMFTWSILFTVILMLWAFPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFF 246

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYIL+ P  G ++ +I
Sbjct: 247 GHPEVYILLFPALGAMADVI 266


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 72.9 bits (171), Expect = 6e-12
 Identities = 33/79 (41%), Positives = 51/79 (64%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F  A+ + A  ++ + P +  A  +L  +R  +  FF    GGDP+L+QHLF FFG
Sbjct: 265 RMPVFAWAMLVFALMIVFAFPAVILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFG 324

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ LP  G++S I+
Sbjct: 325 HPEVYIIFLPAAGMVSMIV 343


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 48/79 (60%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F     IT   ++ + PVL  A+ +L  DR     FF    GG P+L+ +LF  +G
Sbjct: 220 RMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWG 279

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ILP FGI S II
Sbjct: 280 HPEVYIVILPAFGIFSEII 298


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXL-LLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 447
           ++L +FV A  + AF L L+ +PVL  A+T+L  D+ + T FFD A GGD + YQ+LF F
Sbjct: 179 NKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWF 237

Query: 448 FGHPEVYILILPGFGIISHII 510
           + HP VY++ LP   ++  I+
Sbjct: 238 YSHPAVYVIFLPFMAMVFEIV 258


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 36/70 (51%), Positives = 47/70 (67%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           DQ+ LF  ++ IT    +LSLP+LAG IT+LL+DRN N  FF   GG  PIL+Q++   F
Sbjct: 12  DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71

Query: 451 GHPEVYILIL 480
           GH +V  LIL
Sbjct: 72  GHTDVLFLIL 81


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 30/78 (38%), Positives = 51/78 (65%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P++V +V   +   L SL  L  A  ++L +R +  S+F+PA GGDP+L+Q  F F+ 
Sbjct: 190 KMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYS 249

Query: 454 HPEVYILILPGFGIISHI 507
           HP VY+++LP  GI++ +
Sbjct: 250 HPTVYVMLLPYLGILAEV 267


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+ +  +  TAF + ++ P L     +L  +R L   FFD   GGDP+L+QHLF  FG
Sbjct: 222 KMPILMWYLLATAFMIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFG 281

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ LP  G+++ ++
Sbjct: 282 HPEVYIIFLPAAGMVATML 300


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 70.1 bits (164), Expect = 4e-11
 Identities = 34/79 (43%), Positives = 46/79 (58%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F     +TA  +L   P L     +L  +R  +  FF  A GGD +L+QHLF  FG
Sbjct: 196 KMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFG 255

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYI+ LP  G IS I+
Sbjct: 256 HPEVYIIFLPAAGAISTIL 274


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 32/78 (41%), Positives = 47/78 (60%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +P+F          +  S P+L GA+ +L  DR L+  FF    GG+ ++Y +LF  +GH
Sbjct: 226 MPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGH 285

Query: 457 PEVYILILPGFGIISHII 510
           PEVYIL+LP FGI S ++
Sbjct: 286 PEVYILVLPAFGIFSEVV 303


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 31/78 (39%), Positives = 45/78 (57%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +PL+   V +    +L + P L     +   +R  +  FFDP  GGDP+L+QHLF  FGH
Sbjct: 223 MPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGH 282

Query: 457 PEVYILILPGFGIISHII 510
           PEVYI+ LP   + + I+
Sbjct: 283 PEVYIIFLPLIALAAMIV 300


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 34/80 (42%), Positives = 46/80 (57%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 450
           D++P++     +TA  +L   P L     +L  +R     FF  A GGD +L+QHLF  F
Sbjct: 195 DRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLF 254

Query: 451 GHPEVYILILPGFGIISHII 510
           GHPEVYI+ LP  G IS I+
Sbjct: 255 GHPEVYIIFLPAAGAISTIL 274


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 35/79 (44%), Positives = 46/79 (58%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LP  V     T    L + P+L  A+ +L  DR L T FF    GG+ +LY +LF  +G
Sbjct: 243 RLPFVVWTSLTTNIIALTAFPILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWG 302

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVY ++LP FG IS II
Sbjct: 303 HPEVYFVVLPAFGFISEII 321


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +P+F          ++ S P+L  A+ +L  DR L+   F    GG+P++Y +LF  +GH
Sbjct: 225 MPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGH 284

Query: 457 PEVYILILPGFGIISHI 507
           PEVYILILP FG+ S +
Sbjct: 285 PEVYILILPAFGVFSEV 301


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +2

Query: 89  VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 107 IEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISS 146



 Score = 66.9 bits (156), Expect = 4e-10
 Identities = 34/43 (79%), Positives = 36/43 (83%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDP 402
           Q PLFV AV ITA  LLLSLPVLA  IT+LLTDRNLNT+FFDP
Sbjct: 169 QTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 33/61 (54%), Positives = 36/61 (59%)
 Frame = +3

Query: 273 SITLICMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFW 452
           SIT ICM C +Y        TCFS S+Y IIN  K KY IF   W   P  +STFILIFW
Sbjct: 92  SITFICMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFW 151

Query: 453 T 455
           T
Sbjct: 152 T 152



 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 30/57 (52%), Positives = 34/57 (59%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 184
           AF R+  + F              +VENGAGTG TVYPPLSS  AH G SVDLAI+S
Sbjct: 9   AFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVDLAIYS 65


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 36/65 (55%), Positives = 39/65 (60%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           AF R+  I F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL
Sbjct: 93  AFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHL 152

Query: 194 AGISS 208
           +GISS
Sbjct: 153 SGISS 157



 Score = 37.1 bits (82), Expect = 0.37
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAG 348
           +LPLFV A+ +TA  LLLSLPVLAG
Sbjct: 180 KLPLFVWAIFVTAILLLLSLPVLAG 204


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 31/64 (48%), Positives = 41/64 (64%)
 Frame = +1

Query: 319 LLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 498
           +L+S P+L   +  +  DR L+T F+    GG  +LY +L   +GHPEVYILILP FGI 
Sbjct: 234 ILISFPILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIF 293

Query: 499 SHII 510
           S II
Sbjct: 294 SEII 297


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 32/77 (41%), Positives = 44/77 (57%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           +PLF      TA  ++ ++P L      L  DR L+  FF    GG+ + + ++F  FGH
Sbjct: 245 MPLFTWTALCTAIMMIFAMPPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGH 304

Query: 457 PEVYILILPGFGIISHI 507
           PEVYILILP FG+ S I
Sbjct: 305 PEVYILILPAFGVYSEI 321


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAG-----------GGDP 420
           +LP+ +  + ITA     +LPVL     + + DR   T FF P+G           GG P
Sbjct: 221 RLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVINNAAPTVGGGQP 280

Query: 421 ILYQHLF*FFGHPEVYILILPGFGIISHII 510
           +L+QHLF F+ HP VYI++LP  G++S ++
Sbjct: 281 LLWQHLFWFYSHPAVYIMLLPIMGMVSDML 310


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 28/74 (37%), Positives = 43/74 (58%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+F  ++  T+   LL+L  L  A  +   +  L  S F+P  GG P+LYQ  F F+ 
Sbjct: 198 KMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYS 257

Query: 454 HPEVYILILPGFGI 495
           HP VY+++LP  GI
Sbjct: 258 HPAVYVMLLPYLGI 271


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +2

Query: 86  IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           +VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12  MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFF-----------DPAGGGDPI 423
           +P+F  ++ +T + +L +   L  A+ IL +D  L T++F           D    G  +
Sbjct: 192 IPIFSLSINLTVWMMLFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASL 251

Query: 424 LYQHLF*FFGHPEVYILILPGFGIIS 501
           L+ HLF FFGHPEVYI+  P  G+++
Sbjct: 252 LWAHLFWFFGHPEVYIVFFPALGVMA 277


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = +1

Query: 277 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 456
           LPLFV AV   A       P + G   +LL    ++ S++    GG  +++++LF +FGH
Sbjct: 211 LPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGH 269

Query: 457 PEVYILILPGFG 492
           PEVY+L+LPG G
Sbjct: 270 PEVYLLLLPGTG 281


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNT 387
           D++ L   ++ ITA  LLLSLPVLAGAIT+LLTDRN+NT
Sbjct: 163 DKISLLSWSILITAVLLLLSLPVLAGAITMLLTDRNMNT 201


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 26/35 (74%), Positives = 30/35 (85%)
 Frame = +1

Query: 271 DQLPLFV*AVGITAFXLLLSLPVLAGAITILLTDR 375
           D++PLF+ AV IT   LLLSLPVLAGAIT+LLTDR
Sbjct: 120 DRVPLFIWAVFITTVLLLLSLPVLAGAITMLLTDR 154



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +2

Query: 128 PLSSNIAHRGRSVDLAIFSLHLAGISS 208
           PL+S+IAH G SVD+AIFSLHLAG+SS
Sbjct: 72  PLASSIAHAGASVDMAIFSLHLAGVSS 98


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +1

Query: 445 FFGHPEVYILILPGFGIISHII 510
           FFGHPEVYILILPGFG+ISHI+
Sbjct: 2   FFGHPEVYILILPGFGMISHIV 23



 Score = 42.7 bits (96), Expect = 0.007
 Identities = 24/59 (40%), Positives = 29/59 (49%)
 Frame = +3

Query: 477 FTRIWYNFSYYSQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           F  I +  +YYS   GKKE FG                    HH+FT G+D+DTRAYFT
Sbjct: 16  FGMISHIVAYYS---GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFT 71


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 23/37 (62%), Positives = 25/37 (67%)
 Frame = +2

Query: 98  GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 208
           G G    VYPP SS +AH   +VDL IF LHLAGISS
Sbjct: 111 GVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147



 Score = 41.1 bits (92), Expect = 0.023
 Identities = 21/43 (48%), Positives = 24/43 (55%)
 Frame = +1

Query: 319 LLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 447
           L+LS PVLA AIT+L   R  N SFF P   G P  +   F F
Sbjct: 185 LILSXPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = +3

Query: 291 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 443
           M C +YS      +TC  WSYYN IN SKLKYI+F         F+ST IL
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134


>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
           Bruchidius|Rep: Cytochrome c oxidase subunit I -
           Bruchidius aff. varius GLK-2003
          Length = 339

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 22/48 (45%), Positives = 25/48 (52%)
 Frame = +3

Query: 510 SQERGKKETFGCXXXXXXXXXXXXXXXXXXXHHIFTGGIDIDTRAYFT 653
           SQE GKKE FG                    HH+FT G+D+DTRAYFT
Sbjct: 172 SQESGKKEAFGTLGMIYAMMAIGLLGFVVWAHHMFTVGMDVDTRAYFT 219



 Score = 37.1 bits (82), Expect = 0.37
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 460 EVYILILPGFGIISHII 510
           EVYILILPGFG+ISHII
Sbjct: 155 EVYILILPGFGMISHII 171


>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
           Digenea|Rep: Cytochrome c oxidase subunit I -
           Echinostoma hortense
          Length = 154

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 445 FFGHPEVYILILPGFGIISHI 507
           FFGHPEVY+LILP FGI+SHI
Sbjct: 1   FFGHPEVYVLILPVFGIVSHI 21


>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
           Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
           Harmonia axyridis (Multicolored Asian lady beetle)
          Length = 193

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 432 TFILIFWTS*SLYFNFTRIWYNFSYYSQERGKK 530
           + ++IFW+S SLYFN   IWYNF YY   +  K
Sbjct: 2   SLVMIFWSSSSLYFNSPSIWYNFPYYYTSKSGK 34



 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 497 FLILFTRKRKKRNFWLFRNNLCYTSNWVIRIYXLS 601
           F   +T K  K   W F NNLCY S W   I  +S
Sbjct: 24  FPYYYTSKSGKNCLWFFSNNLCYISYWTSSICSMS 58


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           ++P+FV  +   A  L++  P       + L+D    + F+     G P+ Y   F F  
Sbjct: 274 RVPIFVWGLFAAATTLVVESPATYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLF 332

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVY+ ILP F I   I+
Sbjct: 333 HPEVYVFILPAFAIWLEIL 351


>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
           Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
           I - Pachymerium ferrugineum
          Length = 219

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 1   NSARGIXTNXLYKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYF 180
           +++ G   N  +KIL  TPL Y  N    C K C + +NSLP     Y T    R   +F
Sbjct: 73  STSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHF 132

Query: 181 FTT 189
             T
Sbjct: 133 CPT 135


>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 592

 Score = 35.9 bits (79), Expect = 0.85
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           +LPL V   G     +L ++ ++  AI IL     L+    D     +P+L + LF FFG
Sbjct: 167 KLPLAV--FGTFVNFILWTIMIVPVAIEILFQLLPLSLGLVDEI---NPLLARTLFWFFG 221

Query: 454 HPEVYILILPGF 489
           HP VY  +LP +
Sbjct: 222 HPVVYFWLLPAY 233


>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
           Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
           - Locustacarus buchneri
          Length = 185

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +3

Query: 279 TLICMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS 458
           T I M   +Y+      TT  S S +N  N SKL++I+  S     PN I   ILI  T 
Sbjct: 86  TSILMKNPNYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTP 145

Query: 459 *SLYFNFTRI 488
             L+ N T I
Sbjct: 146 SGLHSNSTSI 155


>UniRef50_A3H8Y4 Cluster: Cytochrome-c oxidase precursor; n=1;
           Caldivirga maquilingensis IC-167|Rep: Cytochrome-c
           oxidase precursor - Caldivirga maquilingensis IC-167
          Length = 529

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 310 AFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 483
           A  +L++ P LA  + ++     +N +F    G  D     ++F FFGHP VY L+ P
Sbjct: 221 AIDMLVATPPLAALLLVMFIGSTVNPNFGINVGLAD-----NMFWFFGHPIVYQLLFP 273


>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
           Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
           Roseiflexus sp. RS-1
          Length = 561

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 409 GGDPILYQHLF*FFGHPEVYILILPGF 489
           G DP+L + LF F GHP VY  +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250


>UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1;
           Diplonema papillatum|Rep: Cytochrome c oxidase subunit I
           - Diplonema papillatum
          Length = 287

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH+FT G+D+DTR YF+
Sbjct: 47  HHMFTVGLDVDTRVYFS 63


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 155 GRSVDLAIFSLHLAGISS 208
           G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,662,479
Number of Sequences: 1657284
Number of extensions: 9148153
Number of successful extensions: 20551
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 19659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20498
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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