Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b07
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BZ33 Cluster: Chromosome undetermined scaffold_138, w...    37   0.32 
UniRef50_Q9PQ71 Cluster: Probable thiamine biosynthesis protein ...    33   5.2  
UniRef50_Q183R9 Cluster: Cation-transporting ATPase; n=8; Clostr...    33   6.9  

>UniRef50_A0BZ33 Cluster: Chromosome undetermined scaffold_138, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_138, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1412

 Score = 37.1 bits (82), Expect = 0.32
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 565  LCIRMYCINSNV*TRNRGSSFKLYASAQEFHNGHCLFVCM 446
            LC++ YC+ S     N   S  L   A+E HNGH L+VC+
Sbjct: 1296 LCLKTYCLGSC----NNNQSGNLSLHAEEEHNGHSLYVCL 1331


>UniRef50_Q9PQ71 Cluster: Probable thiamine biosynthesis protein
           thiI; n=1; Ureaplasma parvum|Rep: Probable thiamine
           biosynthesis protein thiI - Ureaplasma parvum
           (Ureaplasma urealyticum biotype 1)
          Length = 390

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 316 QNITPCIGQDNLNCINIISYNYVRI 242
           QN+T C+G DNL  IN+ +YN  +I
Sbjct: 38  QNLTYCVGYDNLKIINLENYNLKQI 62


>UniRef50_Q183R9 Cluster: Cation-transporting ATPase; n=8;
           Clostridium|Rep: Cation-transporting ATPase -
           Clostridium difficile (strain 630)
          Length = 924

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 14/42 (33%), Positives = 29/42 (69%)
 Frame = -1

Query: 454 VCMFIIIPTRRRYIH*L*YNNIVSLFQTLKPRQRAYVLTLTL 329
           +CMF+II  +R+ +  L  ++++S  Q+L+P + AY++ + L
Sbjct: 268 LCMFMIIQMQRKGMLILDTSSVLSFLQSLEPAKNAYMVCIAL 309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,402,556
Number of Sequences: 1657284
Number of extensions: 10620081
Number of successful extensions: 20829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20825
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)