Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q19848 Cluster: Vaccinia related kinase protein 1; n=2;...    32   2.9  
UniRef50_Q0S5R7 Cluster: Dehydrogenase; n=48; Actinomycetales|Re...    31   5.0  
UniRef50_Q54UV4 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_Q19848 Cluster: Vaccinia related kinase protein 1; n=2;
           Caenorhabditis|Rep: Vaccinia related kinase protein 1 -
           Caenorhabditis elegans
          Length = 610

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 11  PGCRNSARGRRSCVLKQTDVTHKIVILLLSPRHVS*LFCASGCSAQ 148
           PG RN  +GRRS ++K+T   +K     L+ R     F  S CS++
Sbjct: 567 PGVRNFPKGRRSMIIKETSAKYK---ERLASRQTKPTFDDSSCSSE 609


>UniRef50_Q0S5R7 Cluster: Dehydrogenase; n=48; Actinomycetales|Rep:
           Dehydrogenase - Rhodococcus sp. (strain RHA1)
          Length = 717

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 293 HXRHGNXGARSPPHG 249
           H RHG+  ARSPPHG
Sbjct: 563 HRRHGSAAARSPPHG 577


>UniRef50_Q54UV4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 310

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 208 RMNEFTLXTSRASDIILIFPLS*TSTGTEQSRHVTRRQ*KNN 83
           R N+FT  TS   +I  +FP+   S GT    H+T     NN
Sbjct: 168 RYNQFT--TSNIINIASVFPIPTLSNGTINGNHITTNNNNNN 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,548,162
Number of Sequences: 1657284
Number of extensions: 3500105
Number of successful extensions: 5949
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5948
length of database: 575,637,011
effective HSP length: 81
effective length of database: 441,397,007
effective search space used: 10152131161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)