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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0034
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   225   6e-58
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   222   7e-57
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   221   2e-56
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   219   6e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   213   3e-54
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   205   8e-52
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   200   2e-50
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   195   9e-49
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   191   1e-47
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   187   2e-46
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   186   3e-46
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   183   4e-45
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   173   2e-42
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   173   3e-42
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...   169   5e-41
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...   164   2e-39
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec...   161   2e-38
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   154   2e-36
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   146   5e-34
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...   145   1e-33
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...   138   8e-32
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   138   1e-31
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...   138   1e-31
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...   136   6e-31
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   135   8e-31
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...   134   2e-30
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br...   132   7e-30
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...   130   3e-29
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...   130   3e-29
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...   120   4e-26
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....   120   4e-26
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...   118   9e-26
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...   117   3e-25
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....   112   8e-24
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...   111   1e-23
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   111   1e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...   110   3e-23
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...   109   6e-23
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...   107   2e-22
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...   106   5e-22
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...   105   7e-22
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...   105   9e-22
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...   105   9e-22
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...   102   7e-21
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...   102   7e-21
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...   102   9e-21
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...   101   2e-20
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...   101   2e-20
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    99   5e-20
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...   100   6e-20
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...    99   1e-19
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    98   2e-19
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    97   4e-19
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    96   8e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    95   1e-18
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    95   1e-18
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...    95   2e-18
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...    95   2e-18
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    94   3e-18
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    93   5e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    93   5e-18
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...    93   5e-18
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...    91   2e-17
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    91   3e-17
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...    89   9e-17
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    89   9e-17
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    89   1e-16
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    89   1e-16
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...    89   1e-16
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...    87   3e-16
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...    87   4e-16
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    87   4e-16
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    87   5e-16
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    85   1e-15
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di...    85   1e-15
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...    85   2e-15
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...    84   3e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    83   4e-15
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    83   6e-15
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    83   6e-15
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    83   6e-15
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    82   1e-14
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...    80   5e-14
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    79   7e-14
UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    74   4e-12
UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1; Ch...    74   4e-12
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha...    74   4e-12
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...    73   8e-12
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    70   4e-11
UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4; Ch...    69   1e-10
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    60   6e-08
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    59   8e-08
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    58   1e-07
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    58   1e-07
UniRef50_Q9TCU2 Cluster: Cytochrome c oxidase subunit I; n=1; Ta...    56   8e-07
UniRef50_Q9TAP9 Cluster: Cytochrome c oxidase subunit I; n=2; To...    56   1e-06
UniRef50_A2T428 Cluster: Putative uncharacterized protein ORF820...    55   2e-06
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...    53   5e-06
UniRef50_Q4XXN6 Cluster: Putative uncharacterized protein; n=1; ...    51   2e-05
UniRef50_Q8LX82 Cluster: Cytochrome c oxidase subunit I; n=3; Ch...    51   3e-05
UniRef50_Q6RCN4 Cluster: Cytochrome c oxidase subunit I; n=1; Bu...    50   5e-05
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    48   2e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    48   2e-04
UniRef50_Q9MFX8 Cluster: Cytochrome oxidase I; n=5; Echinometra ...    46   8e-04
UniRef50_Q5VI63 Cluster: SoxB; n=3; Sulfolobaceae|Rep: SoxB - Ac...    45   0.001
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu...    43   0.006
UniRef50_Q9TAP7 Cluster: Cytochrome oxidase subunit 1; n=1; Clon...    43   0.008
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    43   0.008
UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    41   0.030
UniRef50_Q981A5 Cluster: Heme bearing subunit I of the terminal ...    38   0.21 
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...    37   0.49 
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C...    36   1.1  
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    35   1.5  
UniRef50_Q9YBH5 Cluster: Cytochrome c oxidase (Ba3-type) subunit...    35   1.5  
UniRef50_Q8ZXC1 Cluster: Cytochrome C oxidase subunit I; n=3; Py...    35   1.5  
UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing u...    35   2.0  
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    35   2.0  
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ...    33   8.0  
UniRef50_Q5CTJ9 Cluster: Cation-transporting ATPase; n=2; Crypto...    33   8.0  
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ...    33   8.0  

>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  225 bits (551), Expect = 6e-58
 Identities = 115/206 (55%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P + N+AH G SV +  FSLHLAG+SS                   S  Q PLFV AV
Sbjct: 129 YPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAV 188

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 189 LVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 248

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIISH+++   GKKE F                FIV AHH+FTVG+D+DTRAYFTSA
Sbjct: 249 PGFGIISHVVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T+IIA+PTG+K+F  LAT+HG  I +
Sbjct: 309 TMIIAIPTGVKVFSWLATLHGGAIKW 334


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  222 bits (542), Expect = 7e-57
 Identities = 112/206 (54%), Positives = 135/206 (65%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P + N+AH G SV +  FSLHLAG+SS                   +  Q PLFV +V
Sbjct: 129 YPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSV 188

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 189 LVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 248

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG+ISH+++   GKKE F                FIV AHH+FTVG+D+DTRAYFTSA
Sbjct: 249 PGFGMISHVVTYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T+IIA+PTG+K+F  LAT+HG  I +
Sbjct: 309 TMIIAIPTGVKVFSWLATLHGGAIKW 334


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  221 bits (539), Expect = 2e-56
 Identities = 112/207 (54%), Positives = 136/207 (65%), Gaps = 1/207 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P + N +H G SV +  FSLHLAG+SS                   +  Q PLFV +V
Sbjct: 129 YPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSV 188

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 189 LITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 248

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG+ISHI++   GKKE F                FIV AHH+FTVG+D+DTRAYFTSA
Sbjct: 249 PGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYN 652
           T+IIA+PTG+K+F  LAT+HG+ + ++
Sbjct: 309 TMIIAIPTGVKVFSWLATLHGSNMKWS 335


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  219 bits (534), Expect = 6e-56
 Identities = 114/207 (55%), Positives = 134/207 (64%), Gaps = 1/207 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S  + H G SV +  FSLHLAG SS                   + D++ LF  +V
Sbjct: 113 YPPLSLILGHGGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSV 172

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILIL
Sbjct: 173 FITAILLLLSLPVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILIL 232

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIISH+I  E GKKETF                FIV AHH+FT+G+D+DTRAYFTSA
Sbjct: 233 PGFGIISHMIFNESGKKETFGMLGMIYAMLTIGFLGFIVWAHHMFTIGMDVDTRAYFTSA 292

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYN 652
           T+IIA+PTGIKIF  +AT  G ++  N
Sbjct: 293 TMIIAIPTGIKIFSWMATFSGVKLMNN 319


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  213 bits (520), Expect = 3e-54
 Identities = 112/206 (54%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H G +V +  FSLHL+G+SS                   +  +LPLFV +V
Sbjct: 132 YPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSV 191

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TAF         AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 192 LVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 251

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIISHI+S   G K  F                F+V AHH+FTVG+D+DTRAYFT+A
Sbjct: 252 PGFGIISHIVSTFSG-KPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAA 310

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T+IIAVPTGIKIF  +AT+ G  I Y
Sbjct: 311 TMIIAVPTGIKIFSWIATMWGGSIQY 336


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  205 bits (500), Expect = 8e-52
 Identities = 106/201 (52%), Positives = 130/201 (64%), Gaps = 1/201 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H G SV +  FSLHL+GISS                   +  +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TA          AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+
Sbjct: 189 FVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILII 248

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG++SHI+S   G K  F                F+V +HH++ VG+D+DTRAYFT+A
Sbjct: 249 PGFGMVSHIVSAFSG-KPVFGYLGMVYAMFSIGILGFLVWSHHMYAVGLDVDTRAYFTAA 307

Query: 572 TIIIAVPTGIKIFR*LATIHG 634
           T+IIAVPTGIKIF  LAT++G
Sbjct: 308 TMIIAVPTGIKIFSWLATLYG 328


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  200 bits (489), Expect = 2e-50
 Identities = 106/199 (53%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  +H G +V +  FSLH++G SS                   S  ++PLFV ++
Sbjct: 137 YPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSI 196

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TAF         AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILIL
Sbjct: 197 LVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILIL 256

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG+ISHI+S    +K  F                FIV AHH++TVG+D+DTRAYFT+A
Sbjct: 257 PGFGMISHIVS-TFSRKPVFGYIGMVYAMVSIGVLGFIVWAHHMYTVGLDVDTRAYFTAA 315

Query: 572 TIIIAVPTGIKIFR*LATI 628
           T+IIAVPTGIKIF  +ATI
Sbjct: 316 TMIIAVPTGIKIFSWIATI 334


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  195 bits (475), Expect = 9e-49
 Identities = 105/204 (51%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  AH G SV +  FSLHL  ISS                   S  ++PLFV A+
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAI 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITAF         +  IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILII 249

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGI+SHI+S    KK  F                F+V +HH++ VG+D DTRAYFTSA
Sbjct: 250 PGFGIVSHIVS-TYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQI 643
           T+IIA+PTGIKIF  LATI+G  I
Sbjct: 309 TMIIAIPTGIKIFSWLATIYGGSI 332


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  191 bits (466), Expect = 1e-47
 Identities = 104/209 (49%), Positives = 126/209 (60%), Gaps = 1/209 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H G SV +  F LHL+GISS                      +L LF  AV
Sbjct: 130 YPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAV 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+
Sbjct: 190 VITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILII 249

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIIS  IS     K  F                F+V +HH++TVG+D+DTRAYFT+A
Sbjct: 250 PGFGIISTTIS-ANSNKSVFGYLGMVYAMCSIGILGFVVWSHHMYTVGLDVDTRAYFTAA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYNPN 658
           T+IIAVPTGIKIF  LAT +G  +++ P+
Sbjct: 309 TLIIAVPTGIKIFSWLATCYGGSLHFIPS 337


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  187 bits (455), Expect = 2e-46
 Identities = 101/209 (48%), Positives = 123/209 (58%), Gaps = 2/209 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  +H G SV +  FS HL GI S                       LPLFV +V
Sbjct: 133 YPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSV 192

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +T+F         A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILIL
Sbjct: 193 AVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILIL 252

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG++SHII+    KK  F                FIV AHH++T GID  T+AYFT+A
Sbjct: 253 PGFGLVSHIIA-TFSKKRVFGHVPMIAAMLMIGLIGFIVWAHHMYTSGIDTSTKAYFTAA 311

Query: 572 TIIIAVPTGIKIFR*LATIHGTQI-NYNP 655
           T++IA+PTGIK+F  +AT+ G  I  Y P
Sbjct: 312 TMVIAIPTGIKVFNWIATMWGGSIWMYTP 340


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  186 bits (454), Expect = 3e-46
 Identities = 101/209 (48%), Positives = 123/209 (58%), Gaps = 1/209 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  AH G SV +  F+LHL  ISS                   +  +LPLFV ++
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSI 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITAF         +  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILII 249

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIISH++S    KK  F                F+V +HH++ VG+D DTRAYFTSA
Sbjct: 250 PGFGIISHVVS-TYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSA 308

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYNPN 658
           T+IIA+PTGIKIF  L        N N N
Sbjct: 309 TMIIAIPTGIKIFSWLMNPFSKDKNKNKN 337


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  183 bits (445), Expect = 4e-45
 Identities = 100/206 (48%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H    V +  F LHL+GISS                      +L LF  AV
Sbjct: 156 YPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAV 215

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+
Sbjct: 216 VITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILII 275

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFGIIS +IS     K  F                FIV +HH++TVG+D+DTRAYFT+A
Sbjct: 276 PGFGIISTVIS-ANSNKNVFGYLGMVYAMMSIGLLGFIVWSHHMYTVGLDVDTRAYFTAA 334

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T+IIA+PTG+KIF  LAT +G  +++
Sbjct: 335 TLIIAIPTGVKIFSWLATCYGGSLHF 360


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  173 bits (422), Expect = 2e-42
 Identities = 90/186 (48%), Positives = 114/186 (61%)
 Frame = +2

Query: 92  SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 271
           SLH+AG SS                   +  ++PLFV +V +TAF         A AIT+
Sbjct: 192 SLHIAGASSILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITM 251

Query: 272 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETF 451
           LLTDRN  T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGFGIIS I+S    +K  F
Sbjct: 252 LLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGIISQIVS-TFSRKPVF 310

Query: 452 XXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIH 631
                           F+V AHH+FT G+ ++ + YFT+AT++IAVPTGIKIF  +ATI 
Sbjct: 311 GYLGMAYAMVAIGVVGFVVWAHHMFTTGMSVNVKMYFTAATMVIAVPTGIKIFSWIATIW 370

Query: 632 GTQINY 649
           G  I++
Sbjct: 371 GGSISF 376


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  173 bits (421), Expect = 3e-42
 Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  +H G S+ +  F+LHL+G+SS                    + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIV 266

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           P FG++S I+ Q   KK  F                F V +HH+FTVG+D D+RAYF+ A
Sbjct: 267 PVFGVVSQIV-QVYAKKPIFGKIGMIYAMASIGFLGFCVWSHHMFTVGLDADSRAYFSGA 325

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           ++IIA+PTG KIF  LATI+G  + +
Sbjct: 326 SLIIAIPTGSKIFSWLATIYGGTLRW 351


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score =  169 bits (411), Expect = 5e-41
 Identities = 89/206 (43%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S+      R+V    F++H++G SS                   +  ++PLF  +V
Sbjct: 235 YPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAWSV 294

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            +TA+         AGAIT+LLTDRN  T+FFDPAGGGDPIL+QH+F FFGHPEVYI+IL
Sbjct: 295 FVTAWLLLLSLPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVIL 354

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           P FG+ISHI++    KK  F                F+V AHH++TVG+ +  +AYF  A
Sbjct: 355 PAFGVISHIVA-TFSKKPIFGYLPMVYALVAIGGLGFVVWAHHMYTVGMTLTQQAYFMVA 413

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T++IAVPTGIKIF  +AT+    I++
Sbjct: 414 TMVIAVPTGIKIFSWIATMWMGSISF 439


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score =  164 bits (398), Expect = 2e-39
 Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 1/186 (0%)
 Frame = +2

Query: 80  ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXA 256
           +  FSLH+AG+SS                    F  L P+ +  +  T+          A
Sbjct: 147 LAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLA 206

Query: 257 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 436
             +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISHI+ +   
Sbjct: 207 AGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISHILCRSSA 266

Query: 437 KKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR* 616
           K   F                F+V  HH+F  G+DIDTRAYFT+AT++IAVPTG+K+F  
Sbjct: 267 KLHVFGKIGMSWASMGIAWMGFLVWGHHMFVAGLDIDTRAYFTAATLMIAVPTGVKVFNW 326

Query: 617 LATIHG 634
           LATI G
Sbjct: 327 LATIFG 332


>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
           Echinoida|Rep: Cytochrome c oxidase subunit I -
           Echinometra oblonga
          Length = 386

 Score =  161 bits (390), Expect = 2e-38
 Identities = 73/121 (60%), Positives = 91/121 (75%)
 Frame = +2

Query: 287 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXX 466
           N  T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+   GK+E F     
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIAHYSGKREPFGYLGM 250

Query: 467 XXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 646
                      F+V AHH+FTVG+D+DTRAYFT+AT+IIAVPTGIK+F  +AT+ G+ + 
Sbjct: 251 VYAMIAIGVLGFLVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATLQGSNLQ 310

Query: 647 Y 649
           +
Sbjct: 311 W 311


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  154 bits (374), Expect = 2e-36
 Identities = 91/208 (43%), Positives = 105/208 (50%), Gaps = 1/208 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P + N+AH G SV +  FSLHLAGISS                   S  Q PLFV +V
Sbjct: 130 YPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSV 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 190 LITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 249

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           PGFG+ISH+++   GKKE F                FIV A                   
Sbjct: 250 PGFGMISHVVTYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAXXXXXXXXXXXXXXXXXXX 309

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYNP 655
                          LAT+HG  I ++P
Sbjct: 310 XXXXXXXXXXXXXXWLATLHGGTIKWDP 337


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  146 bits (353), Expect = 5e-34
 Identities = 76/119 (63%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SSNIAH G SV +  FSLHLAGISS                   SFDQ+PLF+ AV
Sbjct: 102 YPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAV 161

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 388
           GITA          AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 162 GITALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score =  145 bits (351), Expect = 1e-33
 Identities = 75/187 (40%), Positives = 98/187 (52%)
 Frame = +2

Query: 95  LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 274
           LH  GI S                   + DQ+ +FV    +T+F         AG++  L
Sbjct: 160 LHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFL 219

Query: 275 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFX 454
           L DRN NTSF+D   GG+P+LYQHLF FFGHPEVY++ILP FGIIS  +     K   F 
Sbjct: 220 LLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIISEAVLFLTDKDRLFG 279

Query: 455 XXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHG 634
                            V  HH++T G+DIDTR YF++AT+IIA+P+ +KIF  L T  G
Sbjct: 280 QTSMTFASIWIAVLGTSVWGHHMYTAGLDIDTRTYFSAATMIIAIPSAVKIFNWLGTFFG 339

Query: 635 TQINYNP 655
           +     P
Sbjct: 340 SNQKMQP 346


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score =  138 bits (335), Expect = 8e-32
 Identities = 76/174 (43%), Positives = 93/174 (53%)
 Frame = +2

Query: 89  FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 268
           FSLHLAG+SS                   S     + V A   T+          A  IT
Sbjct: 243 FSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGIT 297

Query: 269 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 448
           +LL DRN  T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SHI         +
Sbjct: 298 MLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSHICMSLSNNDSS 357

Query: 449 FXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 610
           F                 +V  HH+F VG D  T  +F+S T+II VPTGIK+F
Sbjct: 358 FGYYGLICAMASIVCLGSVVWGHHMFMVGFDSLTGVFFSSITMIIGVPTGIKVF 411


>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  138 bits (334), Expect = 1e-31
 Identities = 72/115 (62%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SSNIAH G SV +  FSLHLAGISS                   SFDQ+PLFV AV
Sbjct: 126 YPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAV 185

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 376
           GITAF         AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 186 GITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score =  138 bits (333), Expect = 1e-31
 Identities = 73/174 (41%), Positives = 97/174 (55%)
 Frame = +2

Query: 89  FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 268
           F++HL GISS                   SF    LF+ A  ITA          AG +T
Sbjct: 151 FAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVT 210

Query: 269 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 448
           ++L DRN NTSF+D  GGGD IL+QH+F FFGHPEVYI++LP FG+IS I+ +  G +  
Sbjct: 211 LILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLISTIV-EVIGFRCV 269

Query: 449 FXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 610
           F                  V AHH+F VG+D+D+RAYF   +I+I +PT +K+F
Sbjct: 270 FSTVAMIYSMILIAILGMFVWAHHMFVVGMDVDSRAYFGGVSILIGLPTCVKLF 323


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score =  136 bits (328), Expect = 6e-31
 Identities = 63/123 (51%), Positives = 81/123 (65%)
 Frame = +2

Query: 257 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 436
           G + +LL+D + NT FFDP   GDPILYQHLF FFGHPEVYILILP FG+ISH+IS    
Sbjct: 210 GGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNY- 268

Query: 437 KKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR* 616
            +  F                 +V  HH++T G+++DTRAYFTS TI+I++PTG K+F  
Sbjct: 269 CRNLFGNQSMILAMGCIAVLGSLVWVHHMYTTGLEVDTRAYFTSTTILISIPTGTKVFNW 328

Query: 617 LAT 625
           + T
Sbjct: 329 ICT 331


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  135 bits (327), Expect = 8e-31
 Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  +H G S+ +  F+LHL+G+SS                    + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIV 266

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTR 553
           P FG++S I+ Q   KK  F                F V +HH+FTVG+D D R
Sbjct: 267 PVFGVVSQIV-QVYAKKPIFGKIGMIYAMASIGFLGFCVWSHHMFTVGLDADKR 319


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score =  134 bits (323), Expect = 2e-30
 Identities = 76/180 (42%), Positives = 101/180 (56%)
 Frame = +2

Query: 89  FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 268
           FSLHLAGI+S                    +  L LF  ++ + +          A  IT
Sbjct: 134 FSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGIT 191

Query: 269 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 448
           ++LTD++L T F+D   GGDP+LYQHLF FFGHPEVY++ILP FG+ S  I Q       
Sbjct: 192 LILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFSSSI-QLSSLHRI 250

Query: 449 FXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
                             +V AHH++T G+DIDTR+YFT+AT+IIAVPTGIKIF  L+++
Sbjct: 251 PGELSLVLAMASIALIGSVVWAHHMYTAGLDIDTRSYFTAATMIIAVPTGIKIFTWLSSL 310


>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
           Bruchidius|Rep: Cytochrome c oxidase subunit I -
           Bruchidius aff. varius GLK-2003
          Length = 339

 Score =  132 bits (319), Expect = 7e-30
 Identities = 64/95 (67%), Positives = 72/95 (75%)
 Frame = +2

Query: 371 EVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDT 550
           EVYILILPGFG+ISHIISQE GKKE F                F+V AHH+FTVG+D+DT
Sbjct: 155 EVYILILPGFGMISHIISQESGKKEAFGTLGMIYAMMAIGLLGFVVWAHHMFTVGMDVDT 214

Query: 551 RAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP 655
           RAYFTSAT+IIAVPTGIK+F  LAT HGTQI Y+P
Sbjct: 215 RAYFTSATMIIAVPTGIKVFSWLATFHGTQILYSP 249


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score =  130 bits (314), Expect = 3e-29
 Identities = 57/81 (70%), Positives = 62/81 (76%)
 Frame = +1

Query: 286 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRN 465
           K KYIIF S W     F+STFILIFWT  SLYFNFT IWYNFSYYF  K KK N W+F +
Sbjct: 7   KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYYFPSKSKKGNLWVFSD 66

Query: 466 NLCYTSNWVIRIYCLSSSYIH 528
           NLCY SNW+I IYCLSSSYI+
Sbjct: 67  NLCYISNWIISIYCLSSSYIY 87



 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +2

Query: 557 YFTSATIIIAVPTGIKIFR*LATIHGTQINYNPN 658
           YFTSAT+IIAVPTGIKIF  LAT HGTQINY+P+
Sbjct: 97  YFTSATMIIAVPTGIKIFSWLATFHGTQINYSPS 130


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score =  130 bits (314), Expect = 3e-29
 Identities = 60/99 (60%), Positives = 73/99 (73%)
 Frame = +2

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVYILILPGFG+ISHI++   GKKE F                FIV AHH+FTVG
Sbjct: 2   FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVG 61

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
           +D+DTRAYFTSAT+IIA+PTG+K+F  LAT+HG  I ++
Sbjct: 62  MDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWD 100


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score =  120 bits (288), Expect = 4e-26
 Identities = 65/172 (37%), Positives = 96/172 (55%)
 Frame = +2

Query: 95  LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 274
           +H+ GISS                   +F  + ++  ++ +T+            AIT L
Sbjct: 162 VHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGL 221

Query: 275 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFX 454
           L DRN+N++ +D  G  DP+LYQHLF FFGHPEVY++ILP FG+ S I++     K+ F 
Sbjct: 222 LLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLTSLILTSII-HKDIFG 278

Query: 455 XXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 610
                          + V AHH+FTVG+DID+R+YF+ AT II++PT +K+F
Sbjct: 279 REGMMYCIISIGVVGYFVWAHHMFTVGLDIDSRSYFSIATSIISIPTSVKMF 330


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score =  120 bits (288), Expect = 4e-26
 Identities = 73/204 (35%), Positives = 97/204 (47%)
 Frame = +2

Query: 41  PTSSNIAHRGRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 220
           P  S ++ +    +   SL L G SS                       +PLF  A+  T
Sbjct: 143 PPLSLLSGKWGEELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLAT 202

Query: 221 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 400
           +          A A+ +L  D    TSFF+P GGGDP++YQHLF F+ HP VYI+ILP F
Sbjct: 203 SSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFF 262

Query: 401 GIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATII 580
           G+IS +I     +K  F                 IV AHH+FT G     R +F + T++
Sbjct: 263 GVISEVI-PVHARKPIFGYRAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRMFFMATTML 321

Query: 581 IAVPTGIKIFR*LATIHGTQINYN 652
           IAVPTGIKIF    T+ G +I  N
Sbjct: 322 IAVPTGIKIFSWCGTLWGGKIQLN 345


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score =  118 bits (285), Expect = 9e-26
 Identities = 62/159 (38%), Positives = 89/159 (55%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S  ++PLFV  + + A            A+ +LL DR L ++FFDP  GG  +L+QH F 
Sbjct: 196 SLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFW 255

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
            FGHPEVYILILPGFG+IS +I     +K  +                + V AHH+F VG
Sbjct: 256 IFGHPEVYILILPGFGMISEVI-PVFSRKPIYGYTFVAASSVAIVLLGYGVWAHHMFAVG 314

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
           + +    +F   +++IA+PTGIK+F   AT+ G +I +N
Sbjct: 315 LGMYADIFFAVGSLLIAIPTGIKVFNWTATLWGGEIQFN 353


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score =  117 bits (281), Expect = 3e-25
 Identities = 66/157 (42%), Positives = 87/157 (55%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           + +++PLFV    + AF           A   LL DR+  T FF P  GGD +L+QHLF 
Sbjct: 195 TLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFW 254

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVYILILP  GIIS ++     +K  F                F+V AHH+F VG
Sbjct: 255 FFGHPEVYILILPTMGIISEVL-PTFSRKPIFGYAFVAYSGVAIGFLGFLVWAHHMFAVG 313

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 646
           +     A+F +A+ +IAVPTG+KIF  LAT+    +N
Sbjct: 314 LGPLANAFFGAASFLIAVPTGVKIFNWLATMWQGSLN 350


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score =  112 bits (269), Expect = 8e-24
 Identities = 59/158 (37%), Positives = 83/158 (52%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           ++ +LPLF     + +             + +++ DR   T+FF+P  GG+ ++++HLF 
Sbjct: 186 TYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFW 245

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
            FGHPEVYILILP FGI S +I     +K  F                F+V  HH+FT G
Sbjct: 246 IFGHPEVYILILPAFGIFSEVI-PVFARKRLFGYSSMVFAIVLIGFLGFMVWVHHMFTTG 304

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
           +     A F  AT+ IA+PTGIKIF  L TI G  + Y
Sbjct: 305 LGPIANAIFAVATMAIAIPTGIKIFNWLLTIWGGNVKY 342


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score =  111 bits (268), Expect = 1e-23
 Identities = 64/194 (32%), Positives = 95/194 (48%)
 Frame = +2

Query: 68  GRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 247
           G + +  F +HL G SS                   +F +  LFV  +            
Sbjct: 97  GVTALYVFVMHLLGASSIATAVNFLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVP 156

Query: 248 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQ 427
             AGA+T+L  D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG  S II  
Sbjct: 157 SLAGAVTMLFLDKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEII-P 215

Query: 428 ERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKI 607
              ++  F                F +  HH+F  G+   TR  F+  T++IAVPTGIKI
Sbjct: 216 VFARRPLFGYTSMVFAVWAITAVSFFLWIHHMFVSGVPNWTRVLFSYTTLLIAVPTGIKI 275

Query: 608 FR*LATIHGTQINY 649
           F  + T++   I++
Sbjct: 276 FNWMLTLYRGAIHF 289


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  111 bits (267), Expect = 1e-23
 Identities = 59/110 (53%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
 Frame = +2

Query: 41  PTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 217
           P S+NIAH G SV +  FSLH+AG+ S                   +  ++PLFV AV I
Sbjct: 50  PLSANIAHEGSSVDLAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEI 109

Query: 218 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 367
           TA          AGAIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 110 TAILLLLSLPVLAGAITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score =  110 bits (265), Expect = 3e-23
 Identities = 59/151 (39%), Positives = 88/151 (58%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S D++PLFV ++ +T+F           A T L+ DR + T FF+PA GGD +L+QHLF 
Sbjct: 193 SLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFW 252

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVYI+ LP  G++S I++    ++  F                F +  HH+F  G
Sbjct: 253 FFGHPEVYIIFLPAVGMVSSIVATFT-QRPVFGYLAMVMALIATGVLAFGLWVHHMFVAG 311

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           +     ++FT++++ IAVP G++IF  LATI
Sbjct: 312 LPRLGESFFTASSMAIAVPAGLQIFCWLATI 342


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score =  109 bits (262), Expect = 6e-23
 Identities = 60/155 (38%), Positives = 83/155 (53%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++P+FV    +T+            A+ +L+ DR    +FF+   GG  + YQHLF  FG
Sbjct: 200 KMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFG 259

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HPEVYILILP  GIIS +I     +K  F                F V +HH+FTVG+  
Sbjct: 260 HPEVYILILPAMGIISEVI-PVHARKMLFGYSVMVFSTALIGFMGFTVWSHHMFTVGMGP 318

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
              + F+  T+ IAVPTG+KIF  L+T+ G QI +
Sbjct: 319 VVNSIFSLTTMAIAVPTGVKIFNWLSTMWGGQIRF 353


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score =  107 bits (258), Expect = 2e-22
 Identities = 64/198 (32%), Positives = 97/198 (48%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 214
           +TP S  ++     ++    LHL G+S+                    +  L +F   + 
Sbjct: 186 YTPLSLQMSSPAVDMMM-LGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTML 244

Query: 215 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 394
             +            A+ +LL DRN  T+FF  AGG DPI +QHLF FFGHPEVY+L+LP
Sbjct: 245 TQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLP 303

Query: 395 GFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSAT 574
             GI+S I+ +  G+K  F                F V AHH+FT GID   R+ F + +
Sbjct: 304 PMGIVSLILPKFSGRK-LFGFKFVVYSTLAIGVLSFGVWAHHMFTTGIDPRIRSSFMAVS 362

Query: 575 IIIAVPTGIKIFR*LATI 628
           + I++P+ +K+F  + T+
Sbjct: 363 LAISIPSAVKVFNWITTM 380


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score =  106 bits (254), Expect = 5e-22
 Identities = 62/137 (45%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
 Frame = +2

Query: 32  QFTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 208
           ++ P S   +H G SV +  F+LHL+G+SS                      +L LF  A
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWA 220

Query: 209 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 388
              +              IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI
Sbjct: 221 TWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILI 273

Query: 389 LPGFGIISHIISQERGK 439
           +PGFGIIS  IS    K
Sbjct: 274 IPGFGIISTTISSSSNK 290



 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +2

Query: 515 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP 655
           HH++TVG+D+DTRAYFT+AT+IIAVPTGIKIF  LAT +G  I   P
Sbjct: 349 HHMYTVGLDVDTRAYFTAATLIIAVPTGIKIFSWLATCYGGSIKMTP 395


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score =  105 bits (253), Expect = 7e-22
 Identities = 61/184 (33%), Positives = 82/184 (44%)
 Frame = +2

Query: 101 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 280
           L+GISS                    F ++P+FV                  G   +LL 
Sbjct: 178 LSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLF 237

Query: 281 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXX 460
           D +  TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S +      +K  F   
Sbjct: 238 DLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSELF-PVYARKPLFGYR 296

Query: 461 XXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQ 640
                         IV AHH+F  G     R  F   T++IA+PTG+K+F  L T+    
Sbjct: 297 FVAIASFGITFLSLIVWAHHMFYTGTPNWMRHIFMFTTMLIAIPTGVKVFAWLGTLWAGN 356

Query: 641 INYN 652
           +  N
Sbjct: 357 LRLN 360


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score =  105 bits (252), Expect = 9e-22
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
 Frame = +2

Query: 254 AGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 418
           AGAI +LL +R+L   FF     DPA  GDP L+QH+F FFGHPEVYIL+LP  G++S +
Sbjct: 209 AGAIMLLL-ERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGLVSEV 267

Query: 419 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 598
           I Q   ++  +                F V  HH+FT   D   R     AT+ +A+P+G
Sbjct: 268 I-QRMARRRAYGYTAIAISSVAIASISFAVWMHHMFTAVQDFAPRVAMAIATMAVAIPSG 326

Query: 599 IKIFR*LATIHGTQI 643
           +K+F  +AT++G +I
Sbjct: 327 VKVFNWVATLYGGRI 341


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score =  105 bits (252), Expect = 9e-22
 Identities = 64/178 (35%), Positives = 89/178 (50%)
 Frame = +2

Query: 95  LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 274
           LHL+G+S+                   S+  L +F   +   +            AI +L
Sbjct: 237 LHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMML 296

Query: 275 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFX 454
           L DRN  TSFF  AG G  IL+QHLF FFGHPEVYI++LP  GIIS+I+ +  G++  F 
Sbjct: 297 LFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGIISYILPRFSGRR-LFG 353

Query: 455 XXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
                          F V AHH+F  G+D   RA F + ++ IAVP+ +K F  + T+
Sbjct: 354 FKFVVYSTLAIGVLSFGVWAHHMFATGLDPRLRASFMAVSLAIAVPSAVKTFNWITTM 411


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score =  102 bits (245), Expect = 7e-21
 Identities = 52/131 (39%), Positives = 77/131 (58%)
 Frame = +2

Query: 257 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 436
           GA+ +L  DR L+  FF    GG+ ++Y +LF  +GHPEVYIL+LP FGI S ++S   G
Sbjct: 249 GALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVSTFAG 308

Query: 437 KKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR* 616
           K+  F                F+V  HH FT+G   +  A+F  AT+II++PTG+K+F  
Sbjct: 309 KR-LFGHKSMIYASGAISVLGFMVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKLFNW 367

Query: 617 LATIHGTQINY 649
           L TI+  ++ +
Sbjct: 368 LFTIYKGRLRF 378


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score =  102 bits (245), Expect = 7e-21
 Identities = 66/217 (30%), Positives = 97/217 (44%), Gaps = 1/217 (0%)
 Frame = +2

Query: 2   IPGCRNRHEGQFTPTSSNIAHRGRSVICYF-SLHLAGISSXXXXXXXXXXXXXXXXXXXS 178
           I G  N     + P +SN    G     Y   L +AGI +                   +
Sbjct: 158 IGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMT 217

Query: 179 FDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 358
             ++P+F     IT             A+ +L  DR     FF    GG P+L+ +LF  
Sbjct: 218 LMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWI 277

Query: 359 FGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGI 538
           +GHPEVYI+ILP FGI S IIS    +K+ F                F+V  HH FT+G 
Sbjct: 278 WGHPEVYIVILPAFGIFSEIIS-SFARKQLFGYKAMVGSIIAISVLSFLVWTHHFFTMGN 336

Query: 539 DIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
                ++F+  T+ I++PTG+KIF  L T++  +I++
Sbjct: 337 SASVNSFFSITTMAISIPTGVKIFNWLFTMYKGRISF 373


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score =  102 bits (244), Expect = 9e-21
 Identities = 64/198 (32%), Positives = 92/198 (46%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 214
           + P S+++++ G   I  F L  AGI+S                     D++     ++ 
Sbjct: 137 YPPLSTSLSNVGIDFII-FGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIV 195

Query: 215 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 394
           +T+F              ++  DR+ NT FF+ +  GDP+LYQHLF FFGHPEVYI+ILP
Sbjct: 196 LTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILP 255

Query: 395 GFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSAT 574
           GFGIIS ++S     KE F                          +        YFT+ T
Sbjct: 256 GFGIISLLLSTYT-TKEMFGNQTMILAMGFNSFVRLFGLGTSYVHIRFGSRYSRYFTTVT 314

Query: 575 IIIAVPTGIKIFR*LATI 628
           I+IA+PTG KIF  + T+
Sbjct: 315 ILIALPTGNKIFNWVTTL 332


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score =  101 bits (242), Expect = 2e-20
 Identities = 55/107 (51%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S N AH G SV +  FSLHLAG+SS                     + + LFV +V
Sbjct: 112 YPPLSGNTAHAGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSV 171

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 352
            ITA          AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 172 KITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =  101 bits (242), Expect = 2e-20
 Identities = 56/111 (50%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  AH G SV +  FSLHLAG+SS                   +  ++PLFV +V
Sbjct: 130 YPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSV 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
            ITA          AGAIT+LLTDR  NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 190 LITAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240



 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 33/49 (67%), Positives = 41/49 (83%)
 Frame = +2

Query: 500 FIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 646
           FIV A H++ VG+D+DTRAYFT+AT+IIAVPTGIKIF  LAT+ G+  N
Sbjct: 250 FIVWADHMYVVGMDVDTRAYFTAATMIIAVPTGIKIFSWLATVSGSGRN 298


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score =   99 bits (238), Expect = 5e-20
 Identities = 63/170 (37%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG------GG 325
           SF +LPL + A  ITA            A  +L+ DR+L TSFF      AG      GG
Sbjct: 229 SFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALHHQGG 288

Query: 326 DPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI 505
            P+L+QHLF F GHPEVYI+++P  GI S +I+    +K  F                FI
Sbjct: 289 SPVLFQHLFWFLGHPEVYIVLIPALGITSEVIA-TNARKPIFGYKAMIGSILGIAVLSFI 347

Query: 506 V*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP 655
           V AHH+F  G++    + F   T+IIAVP+ +K F  + T+    I + P
Sbjct: 348 VWAHHMFVTGMNPFLGSVFMFLTLIIAVPSAVKSFNYITTLWRGNIIFTP 397


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 99.5 bits (237), Expect = 6e-20
 Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
 Frame = +2

Query: 269 ILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 418
           +LL DR L TSFF P           GGG P+L+QHLF FFGHPEVYI+ LP FGI+S +
Sbjct: 238 MLLLDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVSDL 297

Query: 419 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 598
           IS    +K  F                F+V AHH++  G+      +F + T+IIA+PT 
Sbjct: 298 IS-THARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMYPYFGFFFATTTLIIAIPTA 356

Query: 599 IKIFR*LATI-HG 634
           IK++  + T+ HG
Sbjct: 357 IKVYNWVLTLWHG 369


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score = 98.7 bits (235), Expect = 1e-19
 Identities = 53/107 (49%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H G SV +  FSLHL+GISS                   +  +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 352
            +TA          AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 189 FVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 97.9 bits (233), Expect = 2e-19
 Identities = 55/155 (35%), Positives = 85/155 (54%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S +++P+FV AV + +F           A  +L  DR     FF  A  GDPIL+QHLF 
Sbjct: 200 SLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRMAGMHFFT-AASGDPILWQHLFW 258

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVYI+ +P  G++S II     ++  F                F +  HH+FT G
Sbjct: 259 FFGHPEVYIIFIPALGMVSSIIITFT-QRPIFGYIPIVLSIVAIGFIGFGLWVHHMFTAG 317

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQ 640
           +      +FT+++ +IA+P+G++IF  +AT+ G++
Sbjct: 318 LPQLGSNFFTASSAMIAIPSGVQIFCWIATLWGSK 352


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 96.7 bits (230), Expect = 4e-19
 Identities = 49/130 (37%), Positives = 72/130 (55%)
 Frame = +2

Query: 260 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 439
           A+ +L  DR L+   F    GG+P++Y +LF  +GHPEVYILILP FG+ S + S   GK
Sbjct: 249 ALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTSTFAGK 308

Query: 440 KETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*L 619
           +  F                F V  HH FT+G       +F  AT++I++PTG+K+F  L
Sbjct: 309 R-LFGHHSMIYASGAIAVLGFAVWLHHFFTMGAGASVNTFFGLATMLISIPTGVKLFNWL 367

Query: 620 ATIHGTQINY 649
            TI+  ++ +
Sbjct: 368 FTIYQGRLRF 377


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 95.9 bits (228), Expect = 8e-19
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 4/194 (2%)
 Frame = +2

Query: 38  TPTSSNIAHRG--RSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--LPLFV* 205
           TP SSNI + G     I   S+  AGIS+                      +  +P    
Sbjct: 288 TPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLMPFVTI 347

Query: 206 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 385
           ++ +T             A+ ++  DR+  T+FF+ A GGDPIL QHLF FFGHPEVY+L
Sbjct: 348 SIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHPEVYVL 407

Query: 386 ILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFT 565
           I+P FG I+ I+     ++                   ++V  HH++ VG+D  +R  ++
Sbjct: 408 IIPTFGFINMIVPHNNTRR-VASKHHMIWAIYVMAYMGYLVWGHHMYLVGLDHRSRTMYS 466

Query: 566 SATIIIAVPTGIKI 607
           + TI+I++P  IK+
Sbjct: 467 TITIMISMPATIKV 480


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 95.1 bits (226), Expect = 1e-18
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP-----------AGGGDP 331
           +LPL + A+ ITA            A  ++L DR + T FF P           AGGG P
Sbjct: 218 RLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVNNSPMAAGGGQP 277

Query: 332 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV* 511
           +L+QHLF F+ HP VYI+ILP  G++S I++    +K  F                FIV 
Sbjct: 278 LLWQHLFWFYSHPAVYIMILPAMGMVSDILAC-FSRKPIFGYKPMVYSICGIAGLGFIVW 336

Query: 512 AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
            HH+F  G++      F  AT++IA+P+ +K F  L T++G ++ +
Sbjct: 337 GHHMFVSGMNPGLGMTFMVATMMIALPSAVKTFNWLGTVYGGKVQF 382


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 95.1 bits (226), Expect = 1e-18
 Identities = 49/153 (32%), Positives = 81/153 (52%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++P++V +V   +            A  ++L +R +  S+F+PA GGDP+L+Q  F F+ 
Sbjct: 190 KMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYS 249

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HP VY+++LP  GI++ + S    +K  F                 +V AHH+FTVG   
Sbjct: 250 HPTVYVMLLPYLGILAEVAS-TFARKPLFGYRQMVWAQMGIVVLGTMVWAHHMFTVGEST 308

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LATIHGTQI 643
             +  F   T +IAVPTG+K+F  + T+ G ++
Sbjct: 309 LFQIAFAFFTALIAVPTGVKLFNIIGTLWGGKL 341


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 214
           +TP S++       V+  F   + G SS                   ++ ++PLFV A+ 
Sbjct: 158 YTPYSAHTTTTVAPVL--FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIY 215

Query: 215 ITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            T+           G + +L+T  NL     FDPA GGDP+L+QHLF F+ HP VYI++L
Sbjct: 216 ATS-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVL 274

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           P FG++S +++    +K  F                F    HH+F  G        F   
Sbjct: 275 PSFGVMSEVVA-TYSRKNIFGYRAVAYSSLGIAFVGFFAWGHHMFVSGQSTFAGGLFGVL 333

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINY 649
           T+I+ V T IK+F  + T++   + +
Sbjct: 334 TMIVGVFTAIKVFNWVGTVYKGAVEF 359


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 54/100 (54%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
 Frame = -3

Query: 351 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 172
           NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV  T  TN G  S  I
Sbjct: 1   NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59

Query: 171 LFNRXXXXXXXXXXXXXIDEIPAKCSEK*QI-TDLPLCAI 55
             +R             I+E PAKC+EK  + TD P CAI
Sbjct: 60  PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAI 99


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 93.9 bits (223), Expect = 3e-18
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++PLFV     TA             +     +R   T FFD A GG P+L+Q LF FFG
Sbjct: 178 KMPLFVWGFFTTAILMIIAMPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFG 237

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI-V*AHHIFTVGID 541
           HPEVYILILP  G++S ++  +  ++E F                 + V  HH+FT   +
Sbjct: 238 HPEVYILILPAMGLVSELL-PKMARREIFGYTAIALSSIAIAFLSALGVWMHHMFTAIDN 296

Query: 542 IDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
              +   ++ T+ IA+P+G+K+    AT++G +I Y
Sbjct: 297 TLVQIVSSATTMAIAIPSGVKVLNWTATLYGGEIRY 332


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 51/151 (33%), Positives = 79/151 (52%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S  ++P+F  A+ I A            A  +L  +R+    FF    GGDP+L+QHLF 
Sbjct: 203 SLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFW 262

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVYI+ LP  G++S I+     +                    F +  HH+FT G
Sbjct: 263 FFGHPEVYIIFLPAAGLVSMIV-PTMARHPLVGYRLIVVALIGTGFFSFGLWVHHMFTTG 321

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           I   +  +F++A++ +A+P+GI++F  +ATI
Sbjct: 322 IPSLSLGFFSAASMAVAIPSGIQVFSWIATI 352


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 52/151 (34%), Positives = 81/151 (53%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S  ++P+ +  +  TAF              +L  +R L   FFD   GGDP+L+QHLF 
Sbjct: 219 SLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFW 278

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
            FGHPEVYI+ LP  G+++ ++    G K  F                F + AHH+F  G
Sbjct: 279 LFGHPEVYIIFLPAAGMVATMLPTFVG-KPLFGYGFAVAAVVTMSFLSFGLWAHHMFATG 337

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           + I + + F++A+ ++AVPTG++IF  +AT+
Sbjct: 338 LPILSLSLFSAASTMVAVPTGVQIFCFIATL 368


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 52/120 (43%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  AH G SV +  F+LHL  ISS                   +  +LPLFV ++
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSI 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITAF         +  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG     I++L
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FF 361
           ++P+F  ++  T                +LL DRNL T FF +PAGG   +L+ HLF FF
Sbjct: 189 KMPMFTWSILFTVILMLWAFPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFF 246

Query: 362 GHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGID 541
           GHPEVYIL+ P  G ++ +IS   G K  +                F+V  HH+F  G +
Sbjct: 247 GHPEVYILLFPALGAMADVISTFSG-KPIYAKRYILTAFLIATIISFVVWMHHMFITGTN 305

Query: 542 IDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
           I TR +++  TI+I++P  + +   + T++  ++ Y
Sbjct: 306 IYTRLFYSITTILISIPFEMAVMSFIFTLYKGRLVY 341


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 50/119 (42%), Positives = 66/119 (55%)
 Frame = +2

Query: 272 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETF 451
           +  DR L+T F+    GG  +LY +L   +GHPEVYILILP FGI S IIS     K  F
Sbjct: 248 IFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFSEIISY-ICVKSVF 306

Query: 452 XXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
                           F+V  HH FT+G    +  +F+ +T+IIA+PTG+KIF  + TI
Sbjct: 307 SYISLIYATISITVLSFLVWLHHFFTMGSGYLSNIFFSISTMIIAIPTGVKIFNWIFTI 365


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score = 89.0 bits (211), Expect = 9e-17
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 6/212 (2%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRS-VICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           +TP S+N+   G    +   ++ + G+SS                   ++ +LPL +  +
Sbjct: 162 YTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGL 221

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEV 376
            +TA            A  +LL DR+  T FF        GGGDPIL+QHLF  FGHPEV
Sbjct: 222 WLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEV 281

Query: 377 YILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRA 556
           YI+ILP +GI+  ++S    +K                    +V  HH+F  G+      
Sbjct: 282 YIMILPAWGILGDVLS-FFARKPHHWYRGTVWAMVLVTVLSAMVYGHHMFMTGMSPLLGE 340

Query: 557 YFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
            F   T++I++P+ + +   + T+    + Y+
Sbjct: 341 GFMLFTLLISIPSMVVVVNWVLTLWQGSLRYD 372


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 89.0 bits (211), Expect = 9e-17
 Identities = 46/132 (34%), Positives = 70/132 (53%)
 Frame = +2

Query: 260 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 439
           A+ +L  DR L T FF    GG+ +LY +LF  +GHPEVY ++LP FG IS II     +
Sbjct: 268 ALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII-PTFAE 326

Query: 440 KETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*L 619
           K  F                + V  HH FT+G       +F++AT+++ +PTG+K+F   
Sbjct: 327 KPLFGYATMVIATFAIGGISWGVWLHHFFTMGAGPGINIFFSTATMLVGIPTGVKVFNWA 386

Query: 620 ATIHGTQINYNP 655
            T+   ++ + P
Sbjct: 387 LTLWRGRLRFEP 398


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 49/153 (32%), Positives = 75/153 (49%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++P+F  ++  T+            A  +   +  L  S F+P  GG P+LYQ  F F+ 
Sbjct: 198 KMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYS 257

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HP VY+++LP  GI + + S    +K  F                 IV  HH+F VGI  
Sbjct: 258 HPAVYVMLLPYLGIGAEVAS-TMARKPLFGYRVMVYSMLAIVLVSCIVWLHHMFAVGIPE 316

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LATIHGTQI 643
             +  F  +T+I+AVPTG+KIF  + T+ G +I
Sbjct: 317 AWQIAFMISTLIVAVPTGVKIFNLIGTLWGGRI 349


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 1/199 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSVICY-FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S     G ++  Y   + L GIS+                   S D+LP+ V   
Sbjct: 165 YVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGT 224

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
              +          + A  +L  DRN  T FFD A GG P+L+QHLF  F HP VY+++L
Sbjct: 225 LTASVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVL 284

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           P  GI+S  +     ++                   F V  HH+F  GI     A+F +A
Sbjct: 285 PAMGIVSDAL-PTFCRRPLVAYEAVAVSTVATMLIGFEVWVHHMFATGIAPLALAFFGAA 343

Query: 572 TIIIAVPTGIKIFR*LATI 628
           +++I++P+ + +F  +ATI
Sbjct: 344 SMLISIPSAVAVFAWIATI 362


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 52/148 (35%), Positives = 74/148 (50%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++P+F   + + +            A   +L DR L    +DPA GG  +L+QHLF FFG
Sbjct: 206 RMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFG 264

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HPEVY+L LP FGI+S II     +K  F                  V AHH+F  G  +
Sbjct: 265 HPEVYVLALPFFGIVSEII-PVFSRKPMFGYVGLIFATLSIGALSMAVWAHHMFVTGAVL 323

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LATI 628
               +F+  T +I+VPTG+K F  + T+
Sbjct: 324 --LPFFSFMTFLISVPTGVKFFNWVGTM 349


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  AH G SV +  F+LH+  ISS                   +  +LPLFV A+
Sbjct: 130 YPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAI 189

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
            ITA          +  +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 190 LITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score = 87.0 bits (206), Expect = 4e-16
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  +H G S+ +  F+LHL+G+SS                    + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYIL 385
            ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFG   P + I+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIII 266

Query: 386 IL 391
           I+
Sbjct: 267 II 268


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 87.0 bits (206), Expect = 4e-16
 Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
 Frame = +2

Query: 38  TPTSSNIAHRGRSVICY-FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 214
           TP  S I+  G +   + F L + GISS                   S  Q+PL   +  
Sbjct: 132 TPPYSVISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYL 191

Query: 215 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 394
            ++          A A+ +LLTDR   + FF+PA GGDPI Y HLF F  HPEVY+L++P
Sbjct: 192 SSSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIP 251

Query: 395 GFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSAT 574
             G++  ++ +   +K  +                F   AHH+F  G+    +  F   T
Sbjct: 252 AIGMMYEMVPR-FSRKPIYSYNSGLFAFVLLTIVGFSSWAHHMFATGMSFTEKTVFMLGT 310

Query: 575 IIIAVPTGIKIFR*LATIHGTQINYN 652
           +     + + +F  +AT+   +I ++
Sbjct: 311 LAAVPASAMHVFNFVATMWNGRIRFD 336


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG-----------G 322
           +F +LP+ +  + ITA               + + DR   T FF P+G           G
Sbjct: 218 TFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVINNAAPTVGG 277

Query: 323 GDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXF 502
           G P+L+QHLF F+ HP VYI++LP  G++S ++S    +K  F                F
Sbjct: 278 GQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLSC-MCRKPLFGYKPMVFSMSAIASLGF 336

Query: 503 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
           IV  HH+FT G++      F  +T++IA+P+ IK F   ATI G ++ +N
Sbjct: 337 IVWGHHMFTSGMNPAVGMAFMVSTMMIALPSAIKTFNWTATIWGGKLEFN 386


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 85.0 bits (201), Expect = 1e-15
 Identities = 47/147 (31%), Positives = 76/147 (51%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           ++P+F  A+ + A            A  +L  +R  +  FF    GGDP+L+QHLF FFG
Sbjct: 265 RMPVFAWAMLVFALMIVFAFPAVILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFG 324

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HPEVYI+ LP  G++S I+     +                    F +  HH+FT GI  
Sbjct: 325 HPEVYIIFLPAAGMVSMIV-PTMARTPLVGYRFVVLALVGTAFLSFGLWVHHMFTTGIPQ 383

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LAT 625
            + ++F +A+  +A+P+G+++F  +AT
Sbjct: 384 LSLSFFQAASTAVAIPSGMQVFAWIAT 410


>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
           Digenea|Rep: Cytochrome c oxidase subunit I -
           Echinostoma hortense
          Length = 154

 Score = 85.0 bits (201), Expect = 1e-15
 Identities = 40/93 (43%), Positives = 52/93 (55%)
 Frame = +2

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHPEVY+LILP FGI+SHI          F                 +V AHH+F VG
Sbjct: 1   FFGHPEVYVLILPVFGIVSHICMTFTNNDSLFGYYGLVLAMLAIVCLGSVVWAHHMFMVG 60

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHG 634
            D+ T  +F+S T++I +PTGIK+F  L  + G
Sbjct: 61  YDVHTAVFFSSVTMVIGIPTGIKVFSWLIMLGG 93


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score = 84.6 bits (200), Expect = 2e-15
 Identities = 44/155 (28%), Positives = 71/155 (45%)
 Frame = +2

Query: 185 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 364
           +LPLFV ++  T+            ++ ++  +       FDPA GGDP+L+QH F F+ 
Sbjct: 199 RLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYS 258

Query: 365 HPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDI 544
           HP VYI++LP   +IS ++     +K  F                F    HH+FT G   
Sbjct: 259 HPAVYIMVLPAMAVISEVVC-AFSRKNIFGYKAVAYSSLGIAFVGFFTWGHHMFTSGQSA 317

Query: 545 DTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
                F   ++ + + T IK+F   AT++   I +
Sbjct: 318 FNGGVFGVLSMFVGIFTAIKVFNWTATLYKGSIYF 352


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score = 83.8 bits (198), Expect = 3e-15
 Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +   +H G +V +  FSLHL+G SS                    ++ +PLF  AV
Sbjct: 135 YFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAV 194

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
             TA          A  +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 195 LFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 83.4 bits (197), Expect = 4e-15
 Identities = 49/151 (32%), Positives = 73/151 (48%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S D++P++     +TA               +L  +R     FF  A GGD +L+QHLF 
Sbjct: 193 SLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFW 252

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
            FGHPEVYI+ LP  G IS I+     + E                  F +  HH+FT G
Sbjct: 253 LFGHPEVYIIFLPAAGAISTIL-PVMARTELIGYRWVVAAAISLAVLSFGLWVHHMFTTG 311

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           I     A F++A+ ++AVPT +++F  + T+
Sbjct: 312 IPHMGLALFSAASTLVAVPTAVQLFAWIGTL 342


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 83.0 bits (196), Expect = 6e-15
 Identities = 52/155 (33%), Positives = 73/155 (47%)
 Frame = +2

Query: 188 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 367
           +PLF      TA                L  DR L+  FF    GG+ + + ++F  FGH
Sbjct: 245 MPLFTWTALCTAIMMIFAMPPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGH 304

Query: 368 PEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDID 547
           PEVYILILP FG+ S I S   G K  F                F+V  HH FT+G    
Sbjct: 305 PEVYILILPAFGVYSEIFSTFSG-KVLFGYKSLVWATISIAFLSFLVWLHHFFTMGQSGH 363

Query: 548 TRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
             A F  A+++I +PTG+KI+  + T+   +I ++
Sbjct: 364 INAVFGIASMLIGIPTGVKIYDWMWTMLRGRIRFS 398


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 83.0 bits (196), Expect = 6e-15
 Identities = 40/116 (34%), Positives = 64/116 (55%)
 Frame = +2

Query: 281 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXX 460
           +R  +  FFDP  GGDP+L+QHLF  FGHPEVYI+ LP   + + I+     ++      
Sbjct: 254 ERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIV-PTAARQPIVGYS 312

Query: 461 XXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
                        F +  HH+FT G+   +  +F++A+  + +PTGI++F  +AT+
Sbjct: 313 WIVLSAVGTGFLSFGLWVHHMFTTGLPALSLGFFSAASEAVVIPTGIQLFAFVATL 368


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 83.0 bits (196), Expect = 6e-15
 Identities = 48/151 (31%), Positives = 73/151 (48%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 355
           S  ++P+F     +TA               +L  +R  +  FF  A GGD +L+QHLF 
Sbjct: 193 SLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFW 252

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
            FGHPEVYI+ LP  G IS I+     +                    F +  HH+FT G
Sbjct: 253 LFGHPEVYIIFLPAAGAISTIL-PVMARTGLLGYGWIVAAAVALGVLSFGLWVHHMFTTG 311

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           I     A+F++A+ ++AVPT +++F  + T+
Sbjct: 312 IPHLGLAFFSAASTLVAVPTAVQLFIWIGTL 342


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG-----------G 322
           S  ++P+   A  IT+            A  +L  DR   TSFF P+G           G
Sbjct: 214 SLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAGTSFFIPSGLVFNDHVIPHGG 273

Query: 323 GDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXF 502
           G  +L+QHLF FFGHPEVYI ILP  GI+SHI+     ++                   +
Sbjct: 274 GSALLWQHLFWFFGHPEVYIAILPAMGIVSHILINSM-RRPLLSHRVVIGSMISIGFLSY 332

Query: 503 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
           +V  HH+F  G++  +   F+  T+II +P  +     L +++G+++  N
Sbjct: 333 VVWGHHMFVSGMNPLSSLVFSFPTLIITIPATVLTLIWLGSLYGSRLRIN 382


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score = 79.8 bits (188), Expect = 5e-14
 Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P +S  +H G S+ +  F+LHL+G+SS                    + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+  F+ +P V ILI 
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIW 263

Query: 392 PGFGI 406
              GI
Sbjct: 264 LTSGI 268


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 79.4 bits (187), Expect = 7e-14
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 1/204 (0%)
 Frame = +2

Query: 41  PTSSNIAHRGRSVICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 220
           P  S I H G +    FS+ L G +S                    +++L +FV A  + 
Sbjct: 133 PPYSIITH-GNTAFYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LA 190

Query: 221 AFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 397
           AF          G A+T+L  D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP 
Sbjct: 191 AFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPF 250

Query: 398 FGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATI 577
             ++  I++     +                     V  HH++  G+    R      T+
Sbjct: 251 MAMVFEIVATFARNRVFNYKMVVYGGIGGIVLLSGEVWIHHLYVTGMPDWLRVGQMVTTV 310

Query: 578 IIAVPTGIKIFR*LATIHGTQINY 649
           +I++P G+ +   + T++G  I++
Sbjct: 311 LISIPVGLMVIGLVGTLYGGSISF 334


>UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1;
           Diplonema papillatum|Rep: Cytochrome c oxidase subunit I
           - Diplonema papillatum
          Length = 287

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 34/79 (43%), Positives = 50/79 (63%)
 Frame = +2

Query: 374 VYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTR 553
           VY++ILP FG++SH + +  G    +                + V AHH+FTVG+D+DTR
Sbjct: 1   VYVIILPVFGLVSHSLHRG-GLFSLYNMLGMVYAMIAIAVVGYFVWAHHMFTVGLDVDTR 59

Query: 554 AYFTSATIIIAVPTGIKIF 610
            YF+SAT++IA+PT IK+F
Sbjct: 60  VYFSSATLLIALPTSIKVF 78


>UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1;
           Chaoborus punctipennis|Rep: Cytochrome c oxidase subunit
           I - Chaoborus punctipennis
          Length = 205

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 33/40 (82%), Positives = 37/40 (92%)
 Frame = +2

Query: 539 DIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPN 658
           D+DTRAYFTSAT+IIAVPTGIKIF  LAT+HGTQINY P+
Sbjct: 1   DVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQINYTPS 40


>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
           Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
           Harmonia axyridis (Multicolored Asian lady beetle)
          Length = 193

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 30/57 (52%), Positives = 36/57 (63%)
 Frame = +1

Query: 343 TFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLS 513
           + ++IFW+S SLYFN   IWYNF YY+T K  K   W F NNLCY S W   I  +S
Sbjct: 2   SLVMIFWSSSSLYFNSPSIWYNFPYYYTSKSGKNCLWFFSNNLCYISYWTSSICSMS 58


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score = 72.5 bits (170), Expect = 8e-12
 Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P + N+AH G SV +  FSLHLAGISS                   S  Q PLFV AV
Sbjct: 118 YPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAV 177

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 313
            ITA          A  IT+LLTDRNLNT+FFDP
Sbjct: 178 LITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 70.1 bits (164), Expect = 4e-11
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
 Frame = +2

Query: 188 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPI 334
           +P+F  ++ +T +           A+ IL +D  L T++F           D    G  +
Sbjct: 192 IPIFSLSINLTVWMMLFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASL 251

Query: 335 LYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*A 514
           L+ HLF FFGHPEVYI+  P  G+++       G++                   F+V  
Sbjct: 252 LWAHLFWFFGHPEVYIVFFPALGVMAECFQTFTGRR-LVGRKWFIISMVLVALQSFVVWM 310

Query: 515 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 649
           HH+F  GI++  +  F + TI I++P  + +F  + T+   ++ +
Sbjct: 311 HHMFLTGINLPIKTIFMATTIGISLPFDLMVFSLIYTMAKGRVRF 355


>UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4;
           Chaoborus|Rep: Cytochrome c oxidase subunit I -
           Chaoborus crystallinus (Phantom midge) (Tipula
           crystallina)
          Length = 207

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +2

Query: 536 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPN 658
           + + TRAYFTSAT+IIAVPTGIKIF  LAT+HGTQINY+P+
Sbjct: 1   LTLHTRAYFTSATMIIAVPTGIKIFSWLATLHGTQINYSPS 41


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 59.7 bits (138), Expect = 6e-08
 Identities = 29/56 (51%), Positives = 32/56 (57%)
 Frame = +1

Query: 199 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 366
           CM C +Y        TCFS S+Y IIN  K KY IF   W   P  +STFILIFWT
Sbjct: 97  CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 43/149 (28%), Positives = 67/149 (44%)
 Frame = +2

Query: 188 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 367
           LPLFV AV   A           G   +LL    ++ S++    GG  +++++LF +FGH
Sbjct: 211 LPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGH 269

Query: 368 PEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDID 547
           PEVY+L+LPG G +   +S     +  +                 +V  HH F  GI   
Sbjct: 270 PEVYLLLLPGTGAMFDYLS-NLNHRPPYLKKWMIAAMGAISVDSVMVFLHHTFMTGIVFA 328

Query: 548 TRAYFTSATIIIAVPTGIKIFR*LATIHG 634
                +  T  I++PT + I   +AT+ G
Sbjct: 329 WLMADSIFTETISIPTSMLIVGLIATMIG 357


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 31/70 (44%), Positives = 40/70 (57%)
 Frame = +2

Query: 182 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 361
           DQ+ LF  ++ IT           AG IT+LL+DRN N  FF   GG  PIL+Q++   F
Sbjct: 12  DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71

Query: 362 GHPEVYILIL 391
           GH +V  LIL
Sbjct: 72  GHTDVLFLIL 81


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 38  TPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 214
           +P +S+IAH G SV +  FSLHLAG+SS                   + D++PLF+ AV 
Sbjct: 71  SPLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVF 130

Query: 215 ITAFXXXXXXXXXAGAITILLTDR 286
           IT           AGAIT+LLTDR
Sbjct: 131 ITTVLLLLSLPVLAGAITMLLTDR 154


>UniRef50_Q9TCU2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Taenia saginata|Rep: Cytochrome c oxidase subunit I -
           Taenia saginata (Beef tapeworm)
          Length = 147

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 22/44 (50%), Positives = 34/44 (77%)
 Frame = +2

Query: 515 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 646
           HH+FTVG+D++T  +F+S T+II VPTGIK+F  L  +  +++N
Sbjct: 53  HHMFTVGLDVNTAVFFSSVTMIIRVPTGIKVFTWLYMLSNSRVN 96


>UniRef50_Q9TAP9 Cluster: Cytochrome c oxidase subunit I; n=2;
           Toxoplasma gondii|Rep: Cytochrome c oxidase subunit I -
           Toxoplasma gondii
          Length = 192

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +2

Query: 512 AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LAT 625
           AHH+ TVG++ DTRAYF++ TI+IA+PTG KIF  L T
Sbjct: 2   AHHMMTVGLEGDTRAYFSAMTIMIAIPTGTKIFNWLGT 39


>UniRef50_A2T428 Cluster: Putative uncharacterized protein ORF820;
           n=1; Placozoan sp. BZ49|Rep: Putative uncharacterized
           protein ORF820 - Placozoan sp. BZ49
          Length = 820

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 29/30 (96%)
 Frame = +2

Query: 521 IFTVGIDIDTRAYFTSATIIIAVPTGIKIF 610
           ++ VG+D+DTRAYFT+AT+IIAVPTGIKIF
Sbjct: 1   MYVVGMDVDTRAYFTAATMIIAVPTGIKIF 30


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +2

Query: 530 VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP 655
           VG+ +  RAYFTSAT+IIA+PTGIK F  LAT  G  I ++P
Sbjct: 296 VGMXVXPRAYFTSATMIIAIPTGIKAFSWLATXXGGTIKWDP 337


>UniRef50_Q4XXN6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 329

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = +2

Query: 521 IFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGT 637
           ++T G+++DTRA+FTS TI+I++PTG K+F  L T   T
Sbjct: 1   MYTTGLEVDTRAFFTSTTILISIPTGTKVFNWLCTYMST 39


>UniRef50_Q8LX82 Cluster: Cytochrome c oxidase subunit I; n=3;
           Chaoborus|Rep: Cytochrome c oxidase subunit I -
           Chaoborus obscuripes
          Length = 206

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 24/28 (85%), Positives = 26/28 (92%)
 Frame = +2

Query: 542 IDTRAYFTSATIIIAVPTGIKIFR*LAT 625
           +DTRAYFTSAT+IIAVPTGIKIF  LAT
Sbjct: 2   VDTRAYFTSATMIIAVPTGIKIFSWLAT 29


>UniRef50_Q6RCN4 Cluster: Cytochrome c oxidase subunit I; n=1;
           Bucephalid sp. KH-2004|Rep: Cytochrome c oxidase subunit
           I - Bucephalid sp. KH-2004
          Length = 121

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = +2

Query: 503 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 610
           +V  HH+F VG D+ T  +F+S T+II VPTGIK+F
Sbjct: 26  VVWLHHMFMVGFDVKTAVFFSSVTMIIGVPTGIKVF 61


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 34/118 (28%), Positives = 46/118 (38%)
 Frame = +2

Query: 299 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXX 478
           S F     G P+ Y   F F  HPEVY+ ILP F I   I+     K+  F         
Sbjct: 311 SHFYTGPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL-PAAAKRPLFARGWAIAGL 369

Query: 479 XXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
                   +   HH FT   D      F + T  +++PTG      + TI G ++  N
Sbjct: 370 VGVSMSGAMSGVHHYFTAVSDA-RMPIFMTITETVSIPTGFIYLSAIGTIWGGRLRIN 426


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = +1

Query: 202 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 354
           M C +YS      +TC  WSYYN IN SKLKYI+F         F+ST IL
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134


>UniRef50_Q9MFX8 Cluster: Cytochrome oxidase I; n=5; Echinometra
           lucunter|Rep: Cytochrome oxidase I - Echinometra
           lucunter
          Length = 199

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +1

Query: 343 TFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSY 522
           T ILI W   S+Y  F  IW +F+   T       FW+  N L + SNW   I C+S  +
Sbjct: 1   TPILILWPPSSIYSYFAGIWNDFARNRTLFSNASTFWVPGNGLRHDSNWSPSIPCMSPPH 60

Query: 523 IH 528
           +H
Sbjct: 61  VH 62


>UniRef50_Q5VI63 Cluster: SoxB; n=3; Sulfolobaceae|Rep: SoxB -
           Acidianus brierleyi
          Length = 148

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +2

Query: 356 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 535
           FFGHP VY +  P FG + + I     K+  F                 ++  HH+ T  
Sbjct: 2   FFGHPVVYYVPFPLFGALYYYI-PIYAKRSLFSEKWARWNIFLLAIGSMLIWVHHLQTFP 60

Query: 536 IDIDTRAYFTSATIIIAVPTGIKI 607
           + +D RA+ T +T+++A  +G+ +
Sbjct: 61  LPVDLRAWITVSTLVLASGSGLTV 84


>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
           Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
           - Locustacarus buchneri
          Length = 185

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 29/92 (31%), Positives = 43/92 (46%)
 Frame = +1

Query: 214 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 393
           +Y+      TT  S S +N  N SKL++I+  S     PN I   ILI  T   L+ N T
Sbjct: 94  NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153

Query: 394 RIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNW 489
            I    ++      +K N   ++NNL ++  W
Sbjct: 154 SIRNRITHLHNIFSQKSNILYYKNNLRHSIYW 185


>UniRef50_Q9TAP7 Cluster: Cytochrome oxidase subunit 1; n=1;
           Clonorchis sinensis|Rep: Cytochrome oxidase subunit 1 -
           Clonorchis sinensis
          Length = 120

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = -3

Query: 636 VPCIVASHLKILIPVGTAIIIVAEVKYARVSISIPTVNI**AQT 505
           VP  + +H K LIPVGT +I+V E+K   V  S PTVN+  AQT
Sbjct: 51  VPASMYNHEKTLIPVGTPMIMVTELKKTAVPKSSPTVNMWWAQT 94


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS +AH   +V +  F LHLAGISS                   ++    LF    
Sbjct: 119 YPPXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXX 178

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 358
                         A AIT+L   R  N SFF P   G P  +   F F
Sbjct: 179 VXXXXXLILSXPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227


>UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Cytochrome aa3 subunit
           1) (Oxidase aa(3) subunit 1); n=5; Sulfolobaceae|Rep:
           Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3)
           subunit 1) - Sulfolobus acidocaldarius
          Length = 517

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 25/92 (27%), Positives = 42/92 (45%)
 Frame = +2

Query: 332 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV* 511
           +L+  LF F+GHP VY +  P FG + + I Q  G +  +                  V 
Sbjct: 224 LLWAILFWFYGHPVVYYVPFPLFGALYYYIPQYAG-RSLYSEKWARWNIYLLAIGTMGVW 282

Query: 512 AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKI 607
            HH+ T  + I  R +   +T+I+A  +G+ +
Sbjct: 283 VHHLQTWPLPIVLREWVNLSTLILATGSGLTV 314


>UniRef50_Q981A5 Cluster: Heme bearing subunit I of the terminal
           oxidase; n=8; Sulfolobaceae|Rep: Heme bearing subunit I
           of the terminal oxidase - Sulfolobus solfataricus
          Length = 593

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 26/111 (23%), Positives = 43/111 (38%)
 Frame = +2

Query: 320 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXX 499
           G DPI  Q  F  FGH  VY+  +P  G + +++      K  +                
Sbjct: 233 GLDPIANQIAFWIFGHAIVYMAWVPAVGAL-YLLIPMLANKPLYSDRMGRISALLYLIFS 291

Query: 500 FIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 652
             V  HH++ V + I  +      T  + +P+ +  F   AT  G  + +N
Sbjct: 292 NNVPIHHLYMVNLPIALKLLQEVLTYSVVIPSMMTFFNLWATAKGADVKWN 342


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P S   +H G SV +  FSLHL+GISS                   +  +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188

Query: 212 GITAFXXXXXXXXXAG 259
            +TA          AG
Sbjct: 189 FVTAILLLLSLPVLAG 204


>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
           Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
           Roseiflexus sp. RS-1
          Length = 561

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 320 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 436
           G DP+L + LF F GHP VY  +LP +    + + Q+ G
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNFVPQQAG 262


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +2

Query: 176 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 298
           + D++ L   ++ ITA          AGAIT+LLTDRN+NT
Sbjct: 161 TMDKISLLSWSILITAVLLLLSLPVLAGAITMLLTDRNMNT 201


>UniRef50_Q9YBH5 Cluster: Cytochrome c oxidase (Ba3-type) subunit I;
           n=1; Aeropyrum pernix|Rep: Cytochrome c oxidase
           (Ba3-type) subunit I - Aeropyrum pernix
          Length = 548

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +2

Query: 326 DPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI 505
           D +L + LF +FGHP VY  +LP   +  + I +  G    F                  
Sbjct: 207 DVLLARTLFWWFGHPLVYFWLLPAVALWYYAIPRILG-VPLFSETMAKVAYILYMIASTP 265

Query: 506 V*AHHIFT-VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           V  HH F   GI    +   T  T ++A P+ +  F  LAT+
Sbjct: 266 VGLHHQFVDPGIGPFFKLVHTLVTFVVATPSMLTAFNILATL 307


>UniRef50_Q8ZXC1 Cluster: Cytochrome C oxidase subunit I; n=3;
           Pyrobaculum|Rep: Cytochrome C oxidase subunit I -
           Pyrobaculum aerophilum
          Length = 557

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +2

Query: 326 DPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI 505
           D + ++  F FFGHP VY  ++P   I   I+ +  G  E F                  
Sbjct: 206 DVLEWRLWFWFFGHPLVYFWLVPAVTIWYTILPRVLG-TEVFSKTAAKAAFMLYLIASVP 264

Query: 506 V*AHHIFT-VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 628
           V  HH F   G+    +   T  T ++AVP+ I  F  +AT+
Sbjct: 265 VGLHHQFVDPGVHPVYKYLHTVLTYLVAVPSFITAFNVIATL 306


>UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing
           uncharacterized repeats-like precursor; n=3;
           Nitrosospira multiformis ATCC 25196|Rep: Integral
           membrane proteins containing uncharacterized
           repeats-like precursor - Nitrosospira multiformis
           (strain ATCC 25196 / NCIMB 11849)
          Length = 433

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 368 PEVYILILPGFGIISHIISQERGKK 442
           PE+Y LILPG G++  I  Q++ KK
Sbjct: 407 PEIYALILPGLGLVGFIARQKKAKK 431


>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 592

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 326 DPILYQHLF*FFGHPEVYILILPGFGIISHI---ISQERGK 439
           +P+L + LF FFGHP VY  +LP +  +  I   I  E+GK
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKGK 249


>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1420

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 285  RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 163
            +++NN +I      S NNN N++  T  TN  + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078


>UniRef50_Q5CTJ9 Cluster: Cation-transporting ATPase; n=2;
           Cryptosporidium|Rep: Cation-transporting ATPase -
           Cryptosporidium parvum Iowa II
          Length = 1434

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 346 FILIFWT--S*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSS 519
           +I+ FW+  S SLYFN    + N  +  T   KK N  L  + +C+     + +   S +
Sbjct: 558 YIIPFWSTSSMSLYFNNAIKYLNSEHILTTNPKKLNQLLLVDTICFDKTGTLTVPTFSIN 617

Query: 520 YIH 528
            +H
Sbjct: 618 NVH 620


>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein CLN3 - Candida albicans (Yeast)
          Length = 785

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 339 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 202
           Y++ +PP + +KN   K  S NN     IA   T ++NNN N+ +P  H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,756,553
Number of Sequences: 1657284
Number of extensions: 7831460
Number of successful extensions: 20292
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 18639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20055
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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