Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060070.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0LK65 Cluster: Precorrin-2 C20-methyltransferase; n=1;...    39   0.099
UniRef50_Q6KZ99 Cluster: Aspartokinase; n=1; Picrophilus torridu...    35   2.1  
UniRef50_Q98PI0 Cluster: ABC TRANSPORTER ATP-BINDING AND PERMEAS...    34   2.8  
UniRef50_Q05FL1 Cluster: Isoleucyl-tRNA synthetase; n=1; Candida...    33   8.6  
UniRef50_A4SYW6 Cluster: TatD-related deoxyribonuclease; n=1; Po...    33   8.6  
UniRef50_Q22XV6 Cluster: Insect antifreeze protein; n=3; Eukaryo...    33   8.6  

>UniRef50_A0LK65 Cluster: Precorrin-2 C20-methyltransferase; n=1;
           Syntrophobacter fumaroxidans MPOB|Rep: Precorrin-2
           C20-methyltransferase - Syntrophobacter fumaroxidans
           (strain DSM 10017 / MPOB)
          Length = 239

 Score = 39.1 bits (87), Expect = 0.099
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 292 DIFEEYLPPDTPTNWIYFDLKFDHSHLKQGSRFACIALYTILRRKNN 432
           DI  E+LPP TP + + F + FD  HL+      C  +  ILR+  N
Sbjct: 47  DIVREHLPPGTPIDQLAFPMTFDSEHLENAWTANCEQVVEILRQGKN 93


>UniRef50_Q6KZ99 Cluster: Aspartokinase; n=1; Picrophilus
           torridus|Rep: Aspartokinase - Picrophilus torridus
          Length = 337

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 292 DIFEEYLPPDTPTNWIYFDLKFDHSHLKQGSRFACIALYTILRRKNNRMLLMN 450
           D F+E+L         Y   ++  + +  G R A + LY  + ++N+R LL+N
Sbjct: 71  DNFDEHLKEIANDMNYYLSCRYKSAFITSGERLAALILYAAISKRNDRFLLLN 123


>UniRef50_Q98PI0 Cluster: ABC TRANSPORTER ATP-BINDING AND PERMEASE
           PROTEIN; n=1; Mycoplasma pulmonis|Rep: ABC TRANSPORTER
           ATP-BINDING AND PERMEASE PROTEIN - Mycoplasma pulmonis
          Length = 538

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = -1

Query: 641 LV*SSYHRV*INHFEI*HKKKSLKNQ*QHRENREIFYRDVRIIFFTFLLQ----KSIFII 474
           L+ S Y ++ I+  EI + K S+ +   H +NR I  + V ++ FTF L      +IFI 
Sbjct: 25  LILSIYFQLTISE-EIFNFKSSVSDS--HTKNRLIILQIVALLIFTFFLSIKFINAIFID 81

Query: 473 KKKRFLITFINNIRLFFLRKIVYRAIQAKR 384
           K+K  +I  I N  + F     Y+ ++ K+
Sbjct: 82  KQKNEIILKIRNKNIEFFNFCSYKQMKNKK 111


>UniRef50_Q05FL1 Cluster: Isoleucyl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Isoleucyl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 824

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -1

Query: 542 EIFYRDVRIIFFTFLLQ-KSIFIIKKKRFLITFINNIRLFFLRKIVYRAIQAKREPCLRC 366
           EI Y+  +   F F ++  +++++     L +FINN   FF++  +Y  +++K   CL  
Sbjct: 176 EIIYKKKKSFSFYFKIKINNLYLLIWTTSLWSFINNQACFFVKNNIYIILKSKN--CLLV 233

Query: 365 EWSNLRSK*IQLVGVSG 315
             +++  K ++++ + G
Sbjct: 234 FLNSIYKKVLKIINIKG 250


>UniRef50_A4SYW6 Cluster: TatD-related deoxyribonuclease; n=1;
           Polynucleobacter sp. QLW-P1DMWA-1|Rep: TatD-related
           deoxyribonuclease - Polynucleobacter sp. QLW-P1DMWA-1
          Length = 278

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 331 WLVYQAADILQKYQIPHL--VTRQTDSTLMKIAYRYFNGQVS 212
           WL +   D+ +KYQ+P +  V R  D+TL  +  R  NG ++
Sbjct: 117 WLFHAQLDLAEKYQLPVILHVRRSQDATLKALRRRKMNGGIA 158


>UniRef50_Q22XV6 Cluster: Insect antifreeze protein; n=3;
            Eukaryota|Rep: Insect antifreeze protein - Tetrahymena
            thermophila SB210
          Length = 8517

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 518  IIFFTFLLQKSIFIIKKKRFLITFINNIRLFFLRKIVYRAIQAKREPCLRC 366
            +I F+F++Q S F+I+   F ++F+ NI  F +R I    I      C +C
Sbjct: 5722 LISFSFIIQDSSFVIQDYLFTVSFVENIN-FAIRNIQVSTIIC-HPTCAKC 5770


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,945,511
Number of Sequences: 1657284
Number of extensions: 11780110
Number of successful extensions: 27467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27452
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)