Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.9  
UniRef50_UPI00006CCA55 Cluster: F-box domain containing protein;...    34   3.3  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 315 HRHSPLSFWPDLFSWSRFRSGGRF 386
           HR  PLSF PDL S SRFR+G  +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI00006CCA55 Cluster: F-box domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: F-box domain
            containing protein - Tetrahymena thermophila SB210
          Length = 3050

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -1

Query: 273  SARTVTMLEVKCL*VTVNSCFLLYFQLKIELKTLLFFFRFVVSYLFVCNK--ALATILMH 100
            +  T   ++ K + +T N CFLL  Q++   ++ +++F   +  L  CN+    A I+M 
Sbjct: 1370 TTETDDKIQQKWILLTPNKCFLLLQQIQSIRRSYIYYFCLCLDVLATCNRLPLQANIVMD 1429

Query: 99   VC 94
            +C
Sbjct: 1430 IC 1431


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,703,598
Number of Sequences: 1657284
Number of extensions: 10211331
Number of successful extensions: 21702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21692
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)