Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q859S4 Cluster: Coat protein; n=1; Thermus phage IN93|R...    35   2.0  
UniRef50_Q0UUC6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q6CRQ6 Cluster: Similar to sgd|S0006058 Saccharomyces c...    33   8.1  

>UniRef50_Q859S4 Cluster: Coat protein; n=1; Thermus phage IN93|Rep:
           Coat protein - Thermus phage IN93
          Length = 217

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
 Frame = +2

Query: 281 VSWEKNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPAR 460
           ++W     NR+ V Y P Q     P +S P+ P +        P +  P L N   TP  
Sbjct: 21  IAWRMTDPNRQRVPYAPAQPVV--PPSSQPVLPPSSQPISTPTPPQTSPTLPNPIATPTP 78

Query: 461 KPRIHTPVRPVIN----CADIXXXXXRL 532
            P   TP  P I     CAD+     +L
Sbjct: 79  TP-TPTPQTPTITKGQLCADLKEKLQKL 105


>UniRef50_Q0UUC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 1218

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 356 STSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPARKPRIHTPV 484
           S+ TP EP ++   +   P K   V  +  G P RKPR  TPV
Sbjct: 2   SSETPAEPAHKSPALGETPDKPAEVEYDDFGLPIRKPRARTPV 44


>UniRef50_Q6CRQ6 Cluster: Similar to sgd|S0006058 Saccharomyces
            cerevisiae YPL137c; n=1; Kluyveromyces lactis|Rep:
            Similar to sgd|S0006058 Saccharomyces cerevisiae YPL137c
            - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 1278

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 75   KHKLIKMKSVLTYIRGLLGWVDENPTLRT-SFKRDRADDEYSSDEELPALKRV 230
            K  L+++  +   +  +L ++  NP ++  ++ +++ DD YSS +E P LK V
Sbjct: 946  KENLLRLIFMENTLGNILEYLSTNPYIQELNYAKNKDDDNYSSSDERPVLKHV 998


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,788,550
Number of Sequences: 1657284
Number of extensions: 13977388
Number of successful extensions: 36202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36183
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)